Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 7.3e-77 290.4 140 100.0
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.3e-62 242.3 140 82.1
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 1.5e-61 239.6 140 81.4
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 1.5e-58 229.6 140 77.1
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.6e-58 228.8 140 75.0
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 5.8e-58 227.6 155 72.3
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 5.8e-58 227.6 140 77.1
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.1e-56 223.4 140 73.6
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 3.5e-55 218.4 142 71.8
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 7.8e-55 217.2 141 74.5
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.0e-54 216.9 142 71.8
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 3.0e-54 215.3 142 71.1
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 8.6e-54 213.8 142 70.4
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 4.3e-53 211.5 140 70.0
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 5.6e-53 211.1 142 68.3
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 9.5e-53 210.3 140 69.3
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 1.2e-52 209.9 140 70.0
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 2.8e-52 208.8 142 69.0
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.8e-52 208.8 142 68.3
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 2.8e-52 208.8 142 69.0
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 3.6e-52 208.4 142 68.3
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 3.6e-52 208.4 142 68.3
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.7e-52 208.0 142 67.6
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 4.7e-52 208.0 142 67.6
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.4e-51 206.5 142 67.6
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 1.8e-51 206.1 142 67.6
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 3.1e-51 205.3 140 67.1
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 3.1e-51 205.3 142 67.6
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 4.0e-51 204.9 142 67.6
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 6.8e-51 204.1 142 66.9
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 1.2e-50 203.4 133 72.2
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 1.2e-50 203.4 142 66.2
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.2e-50 203.4 142 67.6
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.2e-50 203.4 142 67.6
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 2.0e-50 202.6 142 67.6
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 2.0e-50 202.6 142 66.2
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 2.6e-50 202.2 140 67.1
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 4.4e-50 201.4 131 71.8
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 4.4e-50 201.4 142 67.6
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 7.6e-50 200.7 142 66.2
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 7.6e-50 200.7 141 66.7
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 9.9e-50 200.3 142 68.3
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 1.3e-49 199.9 142 67.6
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 1.3e-49 199.9 142 66.9
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.7e-49 199.5 142 66.2
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.7e-49 199.5 142 66.9
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 2.2e-49 199.1 142 66.9
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 2.9e-49 198.7 142 64.8
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 3.8e-49 198.4 142 66.2
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 4.9e-49 198.0 142 64.1
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 4.9e-49 198.0 142 68.3
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 4.9e-49 198.0 142 67.6
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 4.9e-49 198.0 138 68.1
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 4.9e-49 198.0 142 67.6
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 6.4e-49 197.6 142 66.9
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 8.4e-49 197.2 142 64.1
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 8.4e-49 197.2 142 66.9
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.1e-48 196.8 142 66.9
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.4e-48 196.4 142 62.7
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.4e-48 195.7 143 65.7
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 4.1e-48 194.9 133 69.9
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 4.1e-48 194.9 142 64.1
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 5.4e-48 194.5 142 63.4
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 5.4e-48 194.5 142 65.5
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 9.2e-48 193.7 141 63.8
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 1.2e-47 193.4 142 63.4
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.2e-47 193.4 133 69.2
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.2e-47 193.4 133 69.2
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.6e-47 193.0 133 66.2
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.6e-47 193.0 133 66.2
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.6e-47 193.0 142 64.1
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.1e-47 192.6 142 64.8
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.7e-47 192.2 133 66.2
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 2.7e-47 192.2 128 68.8
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 2.7e-47 192.2 142 64.8
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.7e-47 192.2 142 64.8
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 3.5e-47 191.8 139 66.2
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 4.6e-47 191.4 142 62.7
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 4.6e-47 191.4 142 62.7
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 4.6e-47 191.4 133 66.2
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 4.6e-47 191.4 142 62.7
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 7.8e-47 190.7 133 66.2
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 7.8e-47 190.7 142 62.7
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 7.8e-47 190.7 142 62.7
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 7.8e-47 190.7 142 62.7
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 7.8e-47 190.7 142 62.7
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 7.8e-47 190.7 142 62.7
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.0e-46 190.3 142 63.4
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.3e-46 189.9 142 62.0
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.7e-46 189.5 137 65.7
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.7e-46 189.5 170 55.9
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.3e-46 189.1 142 63.4
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 2.3e-46 189.1 133 66.2
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 3.0e-46 188.7 133 66.9
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 3.9e-46 188.3 142 62.0
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 3.9e-46 188.3 142 62.0
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 5.1e-46 188.0 141 63.8
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 6.6e-46 187.6 133 63.9
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 6.6e-46 187.6 133 64.7
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 8.6e-46 187.2 142 61.3
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 8.6e-46 187.2 133 63.9
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 1.1e-45 186.8 142 61.3
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 1.1e-45 186.8 142 62.0
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 1.1e-45 186.8 142 62.0
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 1.1e-45 186.8 142 62.0
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 1.9e-45 186.0 142 62.0
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 1.9e-45 186.0 142 62.0
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 3.3e-45 185.3 193 51.8
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 3.3e-45 185.3 193 51.8
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 3.3e-45 185.3 138 63.0
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 3.3e-45 185.3 141 63.1
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 4.3e-45 184.9 135 64.4
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 4.3e-45 184.9 133 62.4
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 7.3e-45 184.1 125 67.2
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 9.6e-45 183.7 142 63.4
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 1.2e-44 183.3 143 60.8
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.1e-44 182.6 140 60.0
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 3.6e-44 181.8 126 68.3
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 4.7e-44 181.4 140 60.0
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 4.7e-44 181.4 133 62.4
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 4.7e-44 181.4 141 60.3
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 4.7e-44 181.4 129 63.6
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 6.2e-44 181.0 151 57.6
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 8.1e-44 180.6 140 60.0
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 1.4e-43 179.9 133 63.9
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 2.4e-43 179.1 191 48.2
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 2.4e-43 179.1 135 61.5
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.1e-43 178.7 126 66.7
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 4.0e-43 178.3 140 59.3
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.5e-42 176.4 125 65.6
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 3.4e-42 175.3 141 60.3
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.9e-41 172.2 141 61.0
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 6.4e-41 171.0 141 58.9
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 2.4e-40 169.1 116 66.4
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 3.2e-40 168.7 141 58.9
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.0e-38 163.7 142 56.3
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 1.3e-38 163.3 143 58.7
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.9e-38 161.8 175 50.3
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 8.7e-38 160.6 117 65.8
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 9.6e-37 157.1 142 55.6
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 2.1e-36 156.0 126 58.7
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 4.8e-36 154.8 126 57.1
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.4e-35 152.5 129 58.1
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 4.0e-35 151.8 126 55.6
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 4.5e-34 148.3 125 58.4
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.9e-32 142.9 129 54.3
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 3.2e-32 142.1 108 63.0
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.2e-32 141.7 129 54.3
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 9.3e-32 140.6 126 50.8
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 7.9e-31 137.5 124 49.2
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 3.9e-30 135.2 135 48.9
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.1e-29 133.7 133 51.1
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 2.5e-29 132.5 124 50.0
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 9.9e-26 120.6 277 30.0
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 1.3e-25 120.2 116 48.3
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 6.4e-25 117.9 75 76.0
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.1e-24 117.1 73 72.6
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 1.4e-24 116.7 75 76.0
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 3.9e-22 108.6 80 66.2
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 8.7e-22 107.5 80 66.2
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 8.1e-20 100.9 97 51.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 8.1e-20 100.9 97 51.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 8.1e-20 100.9 97 51.5
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.8e-19 99.8 87 57.5
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 2.4e-19 99.4 67 65.7
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 3.1e-19 99.0 125 40.8
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 1.1e-16 90.5 64 65.6
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 9.3e-16 87.4 123 40.7
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 1.6e-15 86.7 59 66.1
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 1.6e-15 86.7 59 66.1
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.2e-10 70.5 39 74.4
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 7.6e-10 67.8 115 37.4
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 2.5e-08 62.8 66 48.5
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 7.9e-07 57.8 112 34.8
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 1.0e-06 57.4 66 45.5
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 3.0e-06 55.8 115 34.8
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 3.0e-06 55.8 34 70.6
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 6.7e-06 54.7 34 67.6


User provided reference genes

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