Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00327 Erythranthe guttata HOM05D008250 ORTHO05D010361 2.3e-22 108.2 63 100.0
GSVIVG01002948001 Vitis vinifera HOM05D008250 ORTHO05D010361 2.5e-16 88.2 61 75.4
GSVIVG01004436001 Vitis vinifera HOM05D008250 ORTHO05D010361 2.5e-16 88.2 61 75.4
Actinidia16414 Actinidia chinensis HOM05D008250 ORTHO05D010361 4.2e-16 87.4 62 71.0
Hma1.2p1_1760F.1_g301220 Hydrangea macrophylla HOM05D008250 ORTHO05D010361 1.2e-15 85.9 46 89.1
Atru.chr3.1053 Acer truncatum HOM05D008250 ORTHO05D010361 2.7e-15 84.7 61 72.1
CiPaw.01G002500 Carya illinoinensis HOM05D008250 ORTHO05D010361 2.7e-15 84.7 63 69.8
HanXRQChr09g0255361 Helianthus annuus HOM05D008250 ORTHO05D010361 3.6e-15 84.3 46 84.8
ClCG02G012200 Citrullus lanatus HOM05D008250 ORTHO05D010361 1.0e-14 82.8 46 82.6
Phvul.003G233500 Phaseolus vulgaris HOM05D008250 ORTHO05D010361 1.0e-14 82.8 60 68.3
AT5G65880 Arabidopsis thaliana HOM05D008250 ORTHO05D010361 2.3e-14 81.6 63 65.1
TWI74G1530 Tripterygium wilfordii HOM05D008250 ORTHO05D010361 2.3e-14 81.6 61 68.9
Lsat_1_v5_gn_4_159680 Lactuca sativa HOM05D008250 ORTHO05D010361 3.0e-14 81.3 63 65.1
Aqoxy6G02462 Aquilegia oxysepala HOM05D008250 ORTHO05D010361 5.1e-14 80.5 43 90.7
Potri.007G006700 Populus trichocarpa HOM05D008250 ORTHO05D010361 5.1e-14 80.5 63 68.3
COL.COLO4_11607 Corchorus olitorius HOM05D008250 ORTHO05D010361 6.7e-14 80.1 63 65.1
Nn6g34516 Nelumbo nucifera HOM05D008250 ORTHO05D010361 6.7e-14 80.1 44 84.1
Thecc.01G075500 Theobroma cacao HOM05D008250 ORTHO05D010361 8.7e-14 79.7 46 80.4
RcHm_v2.0_Chr2g0108561 Rosa chinensis HOM05D008250 ORTHO05D010361 1.5e-13 79.0 61 65.6
Carub.0008s2677 Capsella rubella HOM05D008250 ORTHO05D010361 2.5e-13 78.2 62 64.5
Manes.12G117000 Manihot esculenta HOM05D008250 ORTHO05D010361 2.5e-13 78.2 63 65.1
Ciclev10026916m.g Citrus clementina HOM05D008250 ORTHO05D010361 3.3e-13 77.8 63 65.1
Sc03g0002500 Simmondsia chinensis HOM05D008250 ORTHO05D010361 3.3e-13 77.8 46 78.3
BcaB02g09904 Brassica carinata HOM05D008250 ORTHO05D010361 4.3e-13 77.4 46 78.3
BcaC01g02825 Brassica carinata HOM05D008250 ORTHO05D010361 4.3e-13 77.4 46 78.3
BraA06t26203Z Brassica rapa HOM05D008250 ORTHO05D010361 4.3e-13 77.4 46 78.3
Gohir.A12G078200 Gossypium hirsutum HOM05D008250 ORTHO05D010361 4.3e-13 77.4 46 76.1
AL8G43594 Arabidopsis lyrata HOM05D008250 ORTHO05D010361 5.7e-13 77.0 43 83.7
Thhalv10005252m.g Eutrema salsugineum HOM05D008250 ORTHO05D010361 5.7e-13 77.0 46 80.4
Gohir.D12G076400 Gossypium hirsutum HOM05D008250 ORTHO05D010361 5.7e-13 77.0 46 73.9
Gorai.008G085000 Gossypium raimondii HOM05D008250 ORTHO05D010361 5.7e-13 77.0 46 73.9
MD02G1189100 Malus domestica HOM05D008250 ORTHO05D010361 5.7e-13 77.0 60 68.3
Sed0009961 Sechium edule HOM05D008250 ORTHO05D010361 9.7e-13 76.3 46 76.1
Glyma.05G107700 Glycine max HOM05D008250 ORTHO05D010361 1.3e-12 75.9 37 91.9
Glyma.17G159100 Glycine max HOM05D008250 ORTHO05D010361 1.3e-12 75.9 37 91.9
C03p59760 Brassica napus HOM05D008250 ORTHO05D010361 2.8e-12 74.7 46 76.1
C03p59770 Brassica napus HOM05D008250 ORTHO05D010361 2.8e-12 74.7 46 76.1
BolC3t18239H Brassica oleracea HOM05D008250 ORTHO05D010361 2.8e-12 74.7 46 76.1
BolC3t18240H Brassica oleracea HOM05D008250 ORTHO05D010361 2.8e-12 74.7 46 76.1
Lj4g0012638 Lotus japonicus HOM05D008250 ORTHO05D010361 3.7e-12 74.3 37 89.2
Prupe.6G217600 Prunus persica HOM05D008250 ORTHO05D010361 3.7e-12 74.3 63 63.5
Lalb_Chr05g0230301 Lupinus albus HOM05D008250 ORTHO05D010361 6.3e-12 73.6 63 71.4
Solyc02g092130.2 Solanum lycopersicum HOM05D008250 ORTHO05D010361 6.3e-12 73.6 43 81.4
CARHR279880 Cardamine hirsuta HOM05D008250 ORTHO05D010361 1.4e-11 72.4 47 78.7
Psat4g080920 Pisum sativum HOM05D008250 ORTHO05D010361 1.4e-11 72.4 36 88.9
TPR.G3717 Trifolium pratense HOM05D008250 ORTHO05D010361 1.4e-11 72.4 36 88.9
PGSC0003DMG400021408 Solanum tuberosum HOM05D008250 ORTHO05D010361 1.8e-11 72.0 43 79.1
Medtr4g097410 Medicago truncatula HOM05D008250 ORTHO05D010361 3.1e-11 71.2 36 86.1
Potri.014G006850 Populus trichocarpa HOM05D008250 ORTHO05D010361 3.1e-11 71.2 45 77.8
CDE02G1785 Ceratophyllum demersum HOM05D008250 ORTHO05D010361 5.3e-11 70.5 45 71.1
SEGI_25339 Sequoiadendron giganteum HOM05D008250 ORTHO05D010361 3.4e-10 67.8 41 73.2
arahy.Tifrunner.gnm1.ann1.IKZ63P Arachis hypogaea HOM05D008250 ORTHO05D010361 1.3e-09 65.9 34 85.3
arahy.Tifrunner.gnm1.ann1.L5XXFX Arachis hypogaea HOM05D008250 ORTHO05D010361 1.3e-09 65.9 34 85.3
CsaV3_2G016360 Cucumis sativus L. HOM05D008250 ORTHO05D010361 6.5e-09 63.5 35 80.0
Rhsim08G0091900 Rhododendron simsii HOM05D008250 ORTHO05D010361 2.7e-07 58.2 109 37.6
Os03g0675700 Oryza sativa ssp. japonica HOM05D008250 ORTHO05D010361 7.9e-07 56.6 39 66.7
SGA_v2.0_scaffold15G07489 Striga asiatica HOM05D008250 ORTHO05D010361 3.0e-06 54.7 44 63.6
Aa31LG1G16230 Aethionema arabicum HOM05D008250 ORTHO05D010361 3.9e-06 54.3 39 64.1
Haze_15258 Corylus avellana HOM05D008250 ORTHO05D010361 5.1e-06 53.9 43 65.1


User provided reference genes

Program Settings