Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 0.0e+00 2033.1 1076 100.0
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1428.3 1080 71.1
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1422.9 1091 70.4
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 0.0e+00 1402.9 1023 74.3
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 0.0e+00 1394.4 1072 70.3
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 0.0e+00 1394.0 1102 68.9
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 0.0e+00 1386.3 1089 67.7
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 0.0e+00 1355.5 1081 66.1
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 0.0e+00 1352.4 1077 65.5
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 0.0e+00 1350.5 1081 66.9
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1345.5 1080 66.2
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1341.3 1079 65.2
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 0.0e+00 1340.5 1100 66.3
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1340.1 1080 65.2
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 0.0e+00 1338.9 1152 64.1
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1338.6 1085 66.9
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 0.0e+00 1336.2 1076 67.1
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 0.0e+00 1334.3 1080 66.9
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1333.2 1085 66.5
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 0.0e+00 1327.4 1080 64.8
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 0.0e+00 1325.5 1079 64.6
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 0.0e+00 1324.3 1078 67.3
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1323.1 1083 63.7
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1316.6 1070 65.9
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 0.0e+00 1315.1 1093 64.4
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 0.0e+00 1313.9 1071 65.3
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 0.0e+00 1313.1 1073 66.5
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 0.0e+00 1297.0 1021 68.6
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1295.8 1076 63.9
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 0.0e+00 1294.3 1086 64.7
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1293.5 1106 62.3
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 0.0e+00 1292.3 1083 66.0
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 0.0e+00 1291.6 1012 68.2
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 0.0e+00 1290.4 1197 60.5
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1290.4 1076 63.8
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 0.0e+00 1287.3 1083 63.8
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 0.0e+00 1286.9 1046 67.3
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 0.0e+00 1286.6 1084 64.3
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 0.0e+00 1285.8 1077 62.9
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 0.0e+00 1283.1 1077 63.5
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 0.0e+00 1281.5 1105 65.5
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 0.0e+00 1275.8 1080 65.0
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 0.0e+00 1275.4 1077 63.0
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1272.7 1070 65.5
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 0.0e+00 1267.7 1077 63.6
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 0.0e+00 1267.3 1131 61.7
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 0.0e+00 1266.1 1013 66.6
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 0.0e+00 1262.7 1077 63.2
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1262.7 1146 60.9
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 0.0e+00 1261.1 1077 63.4
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1260.4 1086 63.3
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1258.0 1144 60.6
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1255.7 1072 64.5
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1254.6 1072 64.8
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 0.0e+00 1254.2 1108 61.5
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 0.0e+00 1251.9 1029 65.5
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 0.0e+00 1251.9 1099 62.6
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 0.0e+00 1249.6 1065 64.9
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 0.0e+00 1248.8 1077 63.0
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 0.0e+00 1248.0 1078 62.7
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 0.0e+00 1246.1 1077 63.0
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1240.7 1094 60.6
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1240.3 1088 62.9
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1240.3 1088 62.9
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 0.0e+00 1239.9 1076 62.6
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 0.0e+00 1237.6 1063 63.6
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 0.0e+00 1234.2 1082 62.6
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 0.0e+00 1233.0 1085 63.1
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 0.0e+00 1232.6 1083 62.9
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 0.0e+00 1230.3 1083 62.0
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 0.0e+00 1226.8 1088 62.0
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1226.8 1082 61.9
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 0.0e+00 1226.8 1082 61.6
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 0.0e+00 1218.4 1083 62.5
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1210.7 1099 60.5
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 0.0e+00 1207.6 1081 61.3
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1203.7 1090 60.9
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 0.0e+00 1201.0 1416 52.3
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1199.1 1108 58.9
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 0.0e+00 1195.3 1075 60.3
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1186.4 1132 58.8
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 0.0e+00 1183.3 1022 61.4
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 0.0e+00 1180.6 1005 65.8
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 0.0e+00 1172.1 1067 60.6
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 0.0e+00 1172.1 1016 63.6
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 0.0e+00 1167.5 1079 60.1
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 0.0e+00 1165.6 1088 58.1
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 0.0e+00 1161.7 1077 60.0
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 0.0e+00 1159.4 1040 58.9
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 0.0e+00 1150.6 1090 59.0
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1149.8 1043 60.3
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 0.0e+00 1147.1 1016 62.6
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 0.0e+00 1146.3 1143 55.2
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 0.0e+00 1142.5 1078 58.8
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 0.0e+00 1133.2 1080 59.0
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 0.0e+00 1132.1 1103 58.4
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 0.0e+00 1129.0 1097 56.8
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 0.0e+00 1119.8 970 62.6
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 0.0e+00 1110.9 1032 59.8
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 0.0e+00 1105.1 1079 57.9
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 0.0e+00 1102.4 1087 56.9
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1077.4 1132 54.5
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.5e-310 1068.9 900 63.3
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 8.1e-301 1037.3 1086 55.2
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 2.7e-288 995.7 875 62.4
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 2.6e-283 979.2 895 59.9
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 2.4e-276 956.1 788 62.8
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 6.9e-276 954.5 947 56.3
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 5.8e-275 951.4 619 75.3
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 5.8e-275 951.4 834 63.1
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 2.3e-271 939.5 937 54.9
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 5.6e-270 934.9 620 75.2
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 7.1e-257 891.3 1073 48.6
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.1e-244 850.9 1066 44.8
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 4.7e-240 835.5 1049 44.9
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 2.2e-237 826.6 549 76.3
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 2.1e-232 810.1 591 69.9
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 2.6e-230 803.1 853 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 4.7e-224 782.3 1039 44.6
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 4.4e-206 722.6 1084 41.0
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 2.3e-199 700.3 624 63.5
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 8.9e-199 698.4 1064 41.4
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 1.1e-193 681.4 623 64.7
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 1.2e-187 661.4 758 51.1
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 1.7e-181 641.0 452 68.4
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 9.6e-169 598.6 1308 34.6
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 4.2e-156 556.6 395 66.8
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 8.7e-154 548.9 419 64.4
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 6.2e-152 542.7 515 61.0
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 1.4e-130 471.9 408 61.3
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 1.6e-115 421.8 324 63.6
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 3.5e-110 404.1 485 49.5
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 4.9e-88 330.5 221 70.1
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 7.3e-84 316.6 236 66.5
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 9.5e-76 289.7 233 63.9
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 2.2e-72 278.5 260 59.6
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.1e-66 259.6 397 46.9
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 3.9e-61 241.1 373 39.1
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 7.3e-60 236.9 362 39.2
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 1.9e-55 222.2 331 39.9
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 1.9e-55 222.2 158 68.4
Gohir.A08G093462 Gossypium hirsutum HOM05D003588 ORTHO05D004252 7.1e-47 193.7 171 59.6
Thhalv10014979m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 5.8e-41 174.1 114 77.2
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 3.8e-40 171.4 200 47.5
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 3.8e-40 171.4 325 37.5
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 3.8e-40 171.4 325 37.5
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 3.3e-36 158.3 251 39.8
Lalb_Chr00c03g0404241 Lupinus albus HOM05D003588 ORTHO05D004252 1.9e-31 142.5 111 63.1
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 5.5e-31 141.0 101 68.3
arahy.Tifrunner.gnm1.ann1.LXU3L0 Arachis hypogaea HOM05D003588 ORTHO05D004252 3.5e-30 138.3 151 53.6
Lsat_1_v5_gn_9_96101 Lactuca sativa HOM05D003588 ORTHO05D004252 1.1e-26 126.7 93 73.1
Cre03.g205137 Chlamydomonas reinhardtii HOM05D003588 ORTHO05D004252 1.8e-26 125.9 193 35.2
QL04p012055 Quercus lobata HOM05D003588 ORTHO05D004252 1.8e-26 125.9 67 89.6
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 1.7e-24 119.4 83 68.7
Dinv12730 Davidia involucrata HOM05D003588 ORTHO05D004252 4.6e-22 111.3 61 88.5
Lalb_Chr00c03g0404231 Lupinus albus HOM05D003588 ORTHO05D004252 1.3e-19 103.2 104 44.2
BcaB08g36855 Brassica carinata HOM05D003588 ORTHO05D004252 4.8e-19 101.3 125 52.0
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 4.8e-19 101.3 95 54.7
Aa31sc24G110 Aethionema arabicum HOM05D003588 ORTHO05D004252 1.4e-15 89.7 147 40.8
MSTRG.2778 Avicennia marina HOM05D003588 ORTHO05D004252 7.2e-15 87.4 57 77.2
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 3.3e-12 78.6 47 80.9
Cfa007893 Carpinus fangiana HOM05D003588 ORTHO05D004252 5.3e-10 71.2 45 73.3
GSVIVG01030980001 Vitis vinifera HOM05D003588 ORTHO05D004252 4.5e-09 68.2 43 74.4
TPR.G213 Trifolium pratense HOM05D003588 ORTHO05D004252 1.0e-08 67.0 36 80.6
AagrBONN_evm.TU.Sc2ySwM_228.5767 Anthoceros agrestis HOM05D003588 ORTHO05D004252 1.3e-08 66.6 69 49.3
MBI16_g38075_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.3e-08 66.6 57 56.1
MCO16G648 Micromonas commoda HOM05D003588 ORTHO05D004252 1.7e-08 66.2 149 27.5
Dinv34795 Davidia involucrata HOM05D003588 ORTHO05D004252 2.2e-08 65.9 35 85.7
TAR374G0202 Trochodendron aralioides HOM05D003588 ORTHO05D004252 2.2e-08 65.9 34 88.2
Lsat_1_v5_gn_1_73461 Lactuca sativa HOM05D003588 ORTHO05D004252 3.8e-08 65.1 37 78.4
TAR374G0225 Trochodendron aralioides HOM05D003588 ORTHO05D004252 5.0e-08 64.7 34 88.2
QL02p050347 Quercus lobata HOM05D003588 ORTHO05D004252 1.1e-07 63.5 39 74.4
ATR0681G242 Amborella trichopoda HOM05D003588 ORTHO05D004252 3.2e-07 62.0 58 51.7
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 3.2e-07 62.0 57 56.1
Aqoxy1G03195 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 4.2e-07 61.6 65 41.5
RcHm_v2.0_Chr3g0494131 Rosa chinensis HOM05D003588 ORTHO05D004252 7.2e-07 60.8 39 71.8
Aqoxy3G00200 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 9.4e-07 60.5 39 74.4
HanXRQChr09g0262701 Helianthus annuus HOM05D003588 ORTHO05D004252 2.7e-06 58.9 41 65.9
Lsat_1_v5_gn_4_155620 Lactuca sativa HOM05D003588 ORTHO05D004252 2.7e-06 58.9 41 65.9


User provided reference genes

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