Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 4246.0 2252 100.0
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 3079.3 2410 71.2
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 3028.8 2293 72.4
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2656.7 2043 69.2
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2655.2 1958 72.7
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2631.7 1889 72.9
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2627.0 2039 69.0
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2597.4 2279 63.0
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2551.5 2315 61.1
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2533.1 2044 65.7
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 2526.9 2036 65.6
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2523.4 2067 64.8
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2496.5 2279 60.8
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2480.7 2209 61.6
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2475.3 2265 60.4
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2471.8 2042 64.4
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2467.2 2143 61.6
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2456.4 2013 64.6
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 2455.6 2034 64.3
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2452.6 2292 59.8
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2451.4 2281 59.4
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2451.0 2209 60.1
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2446.4 2215 60.2
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2446.4 2243 59.6
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2445.2 2039 63.9
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2430.6 2154 61.0
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2428.3 2245 59.5
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2427.1 2110 62.6
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2427.1 2151 61.6
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2425.2 2047 63.9
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2421.4 2040 63.9
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2402.1 2211 59.5
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2378.6 2048 62.0
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2371.7 2043 61.9
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2363.2 1632 74.1
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2359.7 2260 58.0
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2355.9 2225 58.0
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2353.6 2336 57.7
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2353.2 2182 59.5
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2351.2 2159 61.2
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2347.0 2611 54.0
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2346.2 2148 59.5
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2341.2 2188 59.2
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2332.4 2156 59.8
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2330.8 2034 61.6
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2313.9 2172 59.0
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2308.1 2000 61.6
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2303.1 2048 61.0
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2297.7 2286 56.7
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2282.7 2075 59.3
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2271.9 2047 60.1
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 2266.5 2062 60.5
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 2250.3 1883 63.8
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2232.2 2038 59.6
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2232.2 2038 59.6
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 2226.8 2058 59.6
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 2225.3 2254 56.2
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2224.9 2212 57.0
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2216.0 2263 55.3
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2207.6 2127 58.2
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 2205.3 2245 56.3
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 2203.7 2308 54.7
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 2200.6 2299 55.4
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 2199.5 2166 56.6
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2198.7 2167 56.6
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 2198.7 2246 55.0
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2197.9 2231 55.5
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 2191.0 2232 55.5
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 2189.8 2265 55.5
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2161.0 2032 58.0
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2087.8 1454 73.5
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 2071.6 2272 53.0
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1885.9 2940 41.5
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1869.4 1754 59.2
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1843.6 2052 51.8
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1835.1 2045 51.0
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1724.9 1128 78.0
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1631.3 1579 56.9
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1615.9 2044 47.0
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1603.2 1760 51.8
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1590.1 1771 51.9
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1529.6 2031 44.0
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1458.4 2208 41.9
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1347.8 1349 54.4
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1300.4 1991 40.3
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1240.7 1979 40.0
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1196.4 913 67.6
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1189.1 1579 45.3
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1175.6 2086 36.6
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1128.2 1996 37.3
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1107.0 1030 57.9
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 1.7e-305 1053.9 1362 47.0
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 1.2e-303 1047.7 1390 48.6
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 6.8e-302 1042.0 850 64.6
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 2.8e-287 993.4 830 61.9
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 1.2e-250 871.7 725 65.5
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 6.3e-247 859.4 940 51.8
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 2.0e-216 758.1 1010 45.5
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 9.5e-211 739.2 770 56.0
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 4.1e-206 723.8 1084 42.9
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.0e-196 691.0 441 80.7
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 8.4e-191 672.9 802 48.6
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 8.6e-188 662.9 578 60.4
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 1.8e-177 628.6 473 68.9
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 3.3e-171 607.8 777 46.7
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 2.0e-168 598.6 430 73.0
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 6.5e-159 567.0 386 74.9
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 2.0e-152 545.4 375 73.1
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 6.7e-140 503.8 402 63.9
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 1.8e-113 416.0 810 35.4
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 2.0e-112 412.5 287 72.8
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 1.7e-111 409.5 361 64.0
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 2.2e-106 392.5 264 75.4
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 8.6e-95 354.0 1604 26.5
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 4.3e-94 351.7 791 33.6
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 8.0e-93 347.4 298 61.1
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 5.8e-83 314.7 463 39.5
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 9.2e-81 307.4 286 60.8
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 1.7e-79 303.1 1779 23.2
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 1.9e-73 283.1 314 53.2
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 4.2e-65 255.4 160 82.5
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 2.5e-62 246.1 422 41.7
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 3.3e-62 245.7 602 32.4
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.2e-59 237.3 151 80.8
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 8.7e-55 221.1 148 76.4
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 1.3e-53 217.2 187 65.8
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 1.6e-53 216.9 180 68.3
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 4.8e-53 215.3 204 62.7
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 4.8e-53 215.3 204 62.7
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 5.8e-51 208.4 125 85.6
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 2.1e-48 199.9 157 64.3
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.0e-47 196.1 119 84.0
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 1.9e-41 176.8 129 74.4
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 9.3e-41 174.5 438 33.3
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 2.9e-34 152.9 149 59.7
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 8.5e-34 151.4 196 42.3
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 2.8e-29 136.3 265 38.9
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 6.3e-29 135.2 737 23.3
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 1.4e-28 134.0 116 64.7
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.7e-26 127.1 275 32.4
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 9.1e-20 104.8 67 79.1
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 1.2e-19 104.4 137 54.7
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 2.0e-19 103.6 107 54.2
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 4.5e-19 102.4 120 50.0
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 5.0e-18 99.0 75 68.0
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 5.5e-17 95.5 75 64.0
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 5.5e-17 95.5 61 73.8
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.6e-16 94.0 53 81.1
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.6e-16 94.0 53 86.8
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 8.0e-16 91.7 54 81.5
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 8.0e-16 91.7 54 81.5
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 1.0e-15 91.3 599 23.4
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 8.8e-15 88.2 56 73.2
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 8.8e-15 88.2 52 80.8
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 1.5e-14 87.4 116 43.1
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 2.6e-14 86.7 77 58.4
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 3.3e-14 86.3 54 68.5
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 9.7e-14 84.7 62 69.4
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 4.8e-13 82.4 101 49.5
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 1.1e-12 81.3 53 79.2
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 1.4e-12 80.9 56 76.8
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 7.0e-12 78.6 68 63.2
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 2.6e-11 76.6 99 47.5
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 4.5e-11 75.9 67 62.7
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 1.9e-09 70.5 46 67.4
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 1.9e-09 70.5 51 70.6
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 5.5e-09 68.9 417 25.7
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 7.2e-09 68.6 50 72.0
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 1.2e-08 67.8 90 47.8
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.7e-08 65.9 42 78.6
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 8.0e-08 65.1 63 57.1
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 1.0e-07 64.7 147 35.4
PGSC0003DMG400012673 Solanum tuberosum HOM05D003845 ORTHO05D004161 2.3e-07 63.5 89 51.7
Hund29189 Selenicereus undatus HOM05D008000 ORTHO05D000006 2.0e-06 60.5 77 48.1
Hund29191 Selenicereus undatus HOM05D008000 ORTHO05D000006 2.0e-06 60.5 77 48.1
Actinidia09188 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.3e-06 59.7 35 82.9
Actinidia15876 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.3e-06 59.7 59 47.5
arahy.Tifrunner.gnm1.ann1.5G22ZR Arachis hypogaea HOM05D021257 ORTHO05D004161 7.5e-06 58.5 123 33.3


User provided reference genes

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