Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 5.8e-161 570.9 291 100.0
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 1.1e-108 397.1 292 72.9
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 3.3e-100 369.0 284 71.5
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 3.3e-100 369.0 300 69.7
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 3.3e-100 369.0 300 69.7
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 1.1e-98 364.0 281 69.4
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 5.3e-98 361.7 265 73.6
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 7.0e-98 361.3 247 74.1
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.2e-97 360.5 297 67.3
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.6e-97 359.4 235 78.3
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 2.6e-97 359.4 254 72.4
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 4.5e-97 358.6 228 77.6
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 5.9e-97 358.2 254 72.4
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 1.0e-96 357.5 237 77.2
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 1.0e-96 357.5 254 72.4
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 3.8e-96 355.5 289 66.4
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 3.8e-96 355.5 236 77.1
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 3.8e-96 355.5 216 81.9
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 1.9e-95 353.2 219 79.9
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.9e-95 353.2 222 79.3
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 3.2e-95 352.4 252 74.6
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 1.2e-94 350.5 250 73.6
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 8.0e-94 347.8 247 74.1
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 1.0e-93 347.4 275 68.7
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 1.4e-93 347.1 296 64.9
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 1.8e-93 346.7 289 66.8
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 2.3e-93 346.3 262 70.6
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 2.3e-93 346.3 247 72.9
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 2.3e-93 346.3 217 79.7
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 3.0e-93 345.9 263 71.9
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 3.9e-93 345.5 282 67.7
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 3.9e-93 345.5 280 68.6
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 8.8e-93 344.4 265 70.6
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 8.8e-93 344.4 220 77.3
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.0e-92 343.2 244 70.9
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.6e-92 342.8 275 66.9
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 2.6e-92 342.8 268 69.8
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 4.4e-92 342.0 233 75.1
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 1.3e-91 340.5 225 76.0
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 1.7e-91 340.1 233 74.7
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 1.7e-91 340.1 233 74.7
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 2.2e-91 339.7 260 71.9
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 2.8e-91 339.3 225 75.6
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.8e-91 339.3 225 75.6
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 2.8e-91 339.3 292 64.4
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 2.8e-91 339.3 229 73.8
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 8.2e-91 337.8 233 74.2
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 8.2e-91 337.8 220 76.8
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 1.1e-90 337.4 290 64.1
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 1.4e-90 337.0 233 74.2
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 1.8e-90 336.7 232 75.0
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 1.8e-90 336.7 221 75.6
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 2.4e-90 336.3 225 76.0
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 3.1e-90 335.9 234 73.5
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 3.1e-90 335.9 219 77.2
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 4.1e-90 335.5 222 77.9
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 4.1e-90 335.5 290 63.1
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 4.1e-90 335.5 221 76.0
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 4.1e-90 335.5 231 73.2
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 7.0e-90 334.7 227 75.3
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 7.0e-90 334.7 200 82.0
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 9.1e-90 334.3 226 75.7
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 9.1e-90 334.3 240 71.2
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.2e-89 334.0 226 75.2
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.2e-89 334.0 275 65.5
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 1.2e-89 334.0 220 75.5
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 1.6e-89 333.6 233 75.1
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 2.6e-89 332.8 238 70.2
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 3.5e-89 332.4 218 76.6
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 5.9e-89 331.6 224 73.7
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 7.7e-89 331.3 263 67.7
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 2.9e-88 329.3 257 69.6
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 2.9e-88 329.3 220 75.9
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 3.8e-88 328.9 220 73.6
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 5.0e-88 328.6 241 71.8
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 6.5e-88 328.2 260 68.5
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 1.1e-87 327.4 221 76.9
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 1.9e-87 326.6 217 74.7
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 2.7e-86 322.8 231 73.6
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 3.6e-86 322.4 278 64.4
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 6.1e-86 321.6 308 58.4
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 1.0e-85 320.9 209 74.2
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 9.7e-84 314.3 224 71.9
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 2.4e-82 309.7 228 68.9
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 2.7e-81 306.2 210 72.4
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 4.5e-81 305.4 214 71.0
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 1.7e-80 303.5 175 86.3
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.2e-80 303.1 183 78.7
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.9e-80 302.8 183 78.1
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 5.0e-80 302.0 203 73.4
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 6.5e-80 301.6 276 60.1
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 8.0e-78 294.7 259 62.2
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 4.8e-75 285.4 192 71.9
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 6.3e-75 285.0 188 77.1
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 1.4e-74 283.9 305 53.8
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 2.4e-74 283.1 286 55.9
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 1.3e-72 277.3 207 68.1
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 2.3e-72 276.6 225 66.7
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 2.9e-72 276.2 215 67.0
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 2.5e-71 273.1 202 67.3
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 2.8e-70 269.6 229 67.7
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 8.0e-70 268.1 193 64.8
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 5.7e-68 261.9 164 81.1
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 8.3e-67 258.1 233 60.5
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 4.6e-57 225.7 217 60.8
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 3.1e-53 213.0 121 84.3
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 4.9e-51 205.7 272 46.7
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.7e-48 197.2 109 86.2
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 1.6e-46 190.7 194 51.5
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 6.2e-46 188.7 227 44.5
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 2.0e-44 183.7 273 46.5
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 9.9e-44 181.4 240 45.4
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 4.9e-43 179.1 112 82.1
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 4.6e-41 172.6 97 85.6
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 3.0e-40 169.9 97 84.5
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.1e-39 167.9 121 72.7
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 2.9e-35 153.3 129 65.1
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 3.5e-33 146.4 338 36.1
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 3.9e-32 142.9 246 41.9
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 1.6e-30 137.5 78 82.1
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 2.8e-30 136.7 80 80.0
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 3.4e-28 129.8 78 82.1
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 3.9e-24 116.3 130 53.1
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 6.4e-19 99.0 78 69.2
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.4e-18 97.8 137 51.8
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 8.7e-16 88.6 50 82.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 8.7e-16 88.6 51 80.4
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 8.1e-14 82.0 65 61.5
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 1.2e-12 78.2 52 69.2
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 2.6e-12 77.0 55 65.5
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 6.5e-11 72.4 47 68.1
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 5.5e-10 69.3 50 72.0
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 1.6e-09 67.8 48 64.6
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 1.9e-07 60.8 47 59.6


User provided reference genes

Program Settings