Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 0.0e+00 1953.7 992 100.0
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 0.0e+00 1637.1 992 83.4
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 0.0e+00 1617.4 993 83.7
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 0.0e+00 1456.8 992 73.4
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 0.0e+00 1453.3 991 73.7
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 0.0e+00 1447.6 989 73.5
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 0.0e+00 1446.8 994 73.9
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 0.0e+00 1439.9 990 74.9
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 0.0e+00 1432.9 992 72.0
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 0.0e+00 1431.0 986 73.2
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 0.0e+00 1417.1 991 72.5
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1410.2 993 71.4
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 0.0e+00 1401.0 989 71.7
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1400.6 989 71.8
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 0.0e+00 1400.6 989 71.8
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 0.0e+00 1398.3 990 71.1
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1398.3 979 71.9
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 0.0e+00 1397.5 989 71.4
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 0.0e+00 1396.7 989 71.1
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 0.0e+00 1396.7 991 72.0
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1394.4 993 71.5
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 0.0e+00 1393.6 986 72.5
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1390.6 978 72.6
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 0.0e+00 1389.8 1002 71.6
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 0.0e+00 1389.0 980 71.4
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 0.0e+00 1387.1 986 70.9
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 0.0e+00 1386.7 990 71.4
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 0.0e+00 1385.5 997 72.0
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1385.2 978 72.5
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 0.0e+00 1383.2 980 71.1
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 0.0e+00 1381.7 991 70.8
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 0.0e+00 1381.3 986 70.6
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 0.0e+00 1378.6 990 70.4
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 0.0e+00 1377.8 992 70.8
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 0.0e+00 1377.8 989 70.5
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 0.0e+00 1377.8 991 70.5
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 0.0e+00 1375.9 986 70.5
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1375.9 987 71.2
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1375.9 956 72.2
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1373.2 986 69.4
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 0.0e+00 1372.8 991 70.5
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1372.1 982 69.6
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1372.1 986 70.2
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1372.1 986 70.2
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 0.0e+00 1371.7 978 71.3
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 0.0e+00 1366.3 991 70.3
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 0.0e+00 1364.4 1030 68.3
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 0.0e+00 1357.0 986 69.7
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 0.0e+00 1353.6 991 69.9
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 0.0e+00 1346.3 988 68.8
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 0.0e+00 1335.9 979 68.5
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 0.0e+00 1335.9 979 68.8
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 0.0e+00 1333.5 980 69.1
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 0.0e+00 1332.4 967 69.8
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 0.0e+00 1331.6 979 68.6
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 0.0e+00 1330.1 983 68.6
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 0.0e+00 1329.7 983 69.2
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1328.9 983 68.6
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 0.0e+00 1327.8 985 68.7
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1324.7 984 68.2
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 0.0e+00 1324.3 967 70.2
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 0.0e+00 1320.1 983 68.0
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 0.0e+00 1311.2 1025 66.0
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1308.5 997 68.8
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1306.6 997 68.9
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 0.0e+00 1302.7 934 70.3
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 0.0e+00 1282.3 912 71.6
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1280.8 989 66.7
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 0.0e+00 1275.0 1022 65.3
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1268.4 1005 65.5
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 0.0e+00 1246.5 1049 60.9
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 0.0e+00 1246.1 967 64.8
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1219.9 989 64.6
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1219.5 976 65.2
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1211.4 938 66.4
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 0.0e+00 1203.3 901 69.4
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 0.0e+00 1197.2 991 64.1
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1181.4 862 68.2
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1175.2 1018 61.7
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 0.0e+00 1145.6 886 65.9
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1095.9 954 61.1
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 2.0e-306 1055.8 958 57.5
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 2.1e-303 1045.8 749 68.8
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 4.8e-300 1034.6 805 66.6
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 8.0e-295 1017.3 969 54.8
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 6.1e-287 991.1 968 54.0
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 9.1e-275 950.7 703 67.0
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 9.1e-275 950.7 714 66.5
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 1.0e-270 937.2 695 70.6
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 3.3e-264 915.6 960 51.7
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 6.8e-254 881.3 705 65.4
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 2.3e-249 866.3 669 68.6
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 6.0e-242 841.6 581 71.4
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 1.0e-241 840.9 685 64.1
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 6.4e-228 795.0 974 47.6
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 6.4e-220 768.5 775 54.2
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 1.2e-213 747.7 500 73.0
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 8.7e-209 731.5 641 59.1
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 6.2e-207 725.3 619 62.4
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 5.9e-189 665.6 567 61.9
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 4.4e-184 649.4 394 78.4
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 3.7e-151 540.0 988 37.8
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 8.3e-151 538.9 336 77.7
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 1.0e-145 521.9 405 64.0
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 4.7e-138 496.5 297 80.5
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 1.1e-131 475.3 997 33.9
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.2e-112 412.1 308 65.3
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.1e-105 389.0 418 51.7
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 2.4e-81 308.1 223 70.9
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 3.4e-72 277.7 242 66.5
Peaxi162Scf00129g00823 Petunia axillaris HOM05D005389 ORTHO05D008484 1.8e-57 228.8 143 83.9
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 1.3e-55 222.6 108 92.6
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 1.2e-51 209.5 139 73.4
TPR.G17640 Trifolium pratense HOM05D005389 ORTHO05D008484 4.8e-50 204.1 135 82.2
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.8e-33 149.1 110 70.9
RcHm_v2.0_Chr7g0219531 Rosa chinensis HOM05D005389 ORTHO05D008484 9.8e-27 126.7 142 54.9
SEGI_22900 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 3.0e-23 115.2 67 79.1
Gohir.D11G253466 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.1e-22 113.2 67 79.1
Gorai.007G272300 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.1e-22 113.2 67 79.1
Gohir.D01G051322 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.5e-22 112.8 67 79.1
Gohir.D01G103701 Gossypium hirsutum HOM05D005389 ORTHO05D017049 2.5e-22 112.1 67 79.1
Gohir.D07G069451 Gossypium hirsutum HOM05D005389 ORTHO05D017049 2.5e-22 112.1 67 79.1
Gohir.D07G180351 Gossypium hirsutum HOM05D005389 ORTHO05D017049 2.5e-22 112.1 67 79.1
Gorai.008G095000 Gossypium raimondii HOM05D005389 ORTHO05D017049 5.6e-22 110.9 67 77.6
TPR.G36209 Trifolium pratense HOM05D005389 ORTHO05D022799 1.2e-21 109.8 79 70.9
Gorai.009G374100 Gossypium raimondii HOM05D005389 ORTHO05D017049 3.6e-21 108.2 67 77.6
Gohir.D11G223028 Gossypium hirsutum HOM05D005389 ORTHO05D017049 8.1e-21 107.1 67 74.6
Gohir.D06G037575 Gossypium hirsutum HOM05D005389 ORTHO05D022799 2.2e-18 99.0 78 70.5
Gorai.011G193500 Gossypium raimondii HOM05D005389 ORTHO05D022799 2.2e-18 99.0 78 70.5
Gohir.D05G349750 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.9e-17 95.9 81 66.7
HanXRQChr05g0163421 Helianthus annuus HOM05D005389 ORTHO05D022799 1.9e-17 95.9 79 65.8
Gohir.D08G162051 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.0e-15 90.1 78 65.4
RcHm_v2.0_Chr7g0219551 Rosa chinensis HOM05D005389 ORTHO05D008484 8.6e-15 87.0 60 76.7
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 4.7e-13 81.3 69 59.4
Actinidia13461 Actinidia chinensis HOM05D005389 ORTHO05D008484 3.1e-12 78.6 74 50.0
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 2.2e-10 72.4 366 24.6
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 2.2e-10 72.4 366 24.6
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 2.9e-10 72.0 385 23.4
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 8.4e-10 70.5 366 24.0
MD15G1313700 Malus domestica HOM05D006593 ORTHO05D008512 8.4e-10 70.5 367 24.8
FAN28G2735 Fragaria x ananassa HOM05D006593 ORTHO05D008512 2.4e-09 68.9 366 25.1
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 3.2e-09 68.6 71 52.1
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 3.2e-09 68.6 71 52.1
CsaV3_6G045050 Cucumis sativus L. HOM05D006593 ORTHO05D008512 5.4e-09 67.8 344 23.8
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 7.1e-09 67.4 362 23.8
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 1.6e-08 66.2 346 25.1
Gorai.010G120100 Gossypium raimondii HOM05D005389 ORTHO05D047357 2.1e-08 65.9 71 49.3
MBI06_g07364_MAGBIO Magnolia biondii HOM05D006593 ORTHO05D008512 2.1e-08 65.9 341 24.6
Pp3c8_800 Physcomitrium patens HOM05D006593 ORTHO05D008512 3.5e-08 65.1 191 26.7
Gohir.D03G059266 Gossypium hirsutum HOM05D005389 ORTHO05D047261 4.6e-08 64.7 53 71.7
Gorai.003G063200 Gossypium raimondii HOM05D005389 ORTHO05D047261 4.6e-08 64.7 53 71.7
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 6.0e-08 64.3 362 23.5
PSO017G0451 Papaver somniferum HOM05D006593 ORTHO05D008512 7.8e-08 63.9 385 22.6
TAR628G0061 Trochodendron aralioides HOM05D006593 ORTHO05D008512 7.8e-08 63.9 359 24.5
Lsat_1_v5_gn_3_61401 Lactuca sativa HOM05D006593 ORTHO05D008512 1.3e-07 63.2 344 24.7
Medtr5g032210 Medicago truncatula HOM05D006593 ORTHO05D008512 1.3e-07 63.2 372 24.2
Gorai.007G302600 Gossypium raimondii HOM05D000602 ORTHO05D010708 1.7e-07 62.8 35 82.9
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 2.3e-07 62.4 363 23.7
Rhsim10G0172300 Rhododendron simsii HOM05D006593 ORTHO05D008512 2.3e-07 62.4 350 23.4
TPR.G29973 Trifolium pratense HOM05D006593 ORTHO05D008512 3.9e-07 61.6 369 23.8
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 6.6e-07 60.8 203 27.6
COL.COLO4_27348 Corchorus olitorius HOM05D006593 ORTHO05D008512 8.6e-07 60.5 364 23.6
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 1.5e-06 59.7 353 24.4
Nn5g29896 Nelumbo nucifera HOM05D006593 ORTHO05D008512 1.5e-06 59.7 363 24.0
Cfa006891 Carpinus fangiana HOM05D006593 ORTHO05D008512 1.9e-06 59.3 365 23.8
Thhalv10000032m.g Eutrema salsugineum HOM05D006593 ORTHO05D008512 5.6e-06 57.8 374 23.3
Os02g0781600 Oryza sativa ssp. japonica HOM05D006593 ORTHO05D008512 7.3e-06 57.4 190 28.9


User provided reference genes

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