Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 4.3e-175 617.8 307 100.0
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 9.4e-146 520.4 309 82.5
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 4.4e-143 511.5 309 80.3
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 1.0e-136 490.3 306 79.7
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.4e-133 479.2 309 76.4
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.4e-133 479.2 309 76.4
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 9.2e-133 477.2 310 75.8
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 2.7e-132 475.7 309 77.7
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 2.3e-131 472.6 309 76.4
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 3.0e-131 472.2 309 77.0
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 3.9e-131 471.9 309 77.3
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 8.6e-131 470.7 311 74.6
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 8.6e-131 470.7 311 74.6
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.1e-130 470.3 309 75.1
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.5e-130 469.9 309 76.1
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 1.9e-130 469.5 309 74.4
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 2.5e-130 469.2 309 75.1
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 3.3e-130 468.8 308 75.3
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 3.3e-130 468.8 307 76.2
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 4.3e-130 468.4 309 75.1
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 4.3e-130 468.4 309 75.7
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 1.2e-129 466.8 308 75.0
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 1.2e-129 466.8 308 75.3
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 1.2e-129 466.8 309 75.7
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 2.1e-129 466.1 311 74.9
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 2.1e-129 466.1 309 74.8
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 2.8e-129 465.7 309 74.4
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 3.6e-129 465.3 310 74.5
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 3.6e-129 465.3 309 75.4
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 4.7e-129 464.9 309 76.7
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 6.2e-129 464.5 308 74.7
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 1.4e-128 463.4 307 74.3
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 1.8e-128 463.0 310 74.2
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 2.3e-128 462.6 313 74.1
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 2.3e-128 462.6 308 75.0
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 2.3e-128 462.6 310 74.5
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 5.2e-128 461.5 310 75.8
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 5.2e-128 461.5 307 74.3
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 5.2e-128 461.5 304 76.0
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 6.8e-128 461.1 314 74.2
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 6.8e-128 461.1 308 74.0
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 8.9e-128 460.7 309 74.1
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 1.2e-127 460.3 311 74.9
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.5e-127 459.9 310 73.2
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 1.5e-127 459.9 308 73.7
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.5e-127 459.9 308 75.0
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.0e-127 459.5 309 74.8
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 2.0e-127 459.5 307 74.3
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 3.4e-127 458.8 308 73.7
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 3.4e-127 458.8 311 72.7
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 7.5e-127 457.6 308 74.7
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 9.8e-127 457.2 314 74.2
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 9.8e-127 457.2 307 73.0
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 1.7e-126 456.4 308 73.7
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 1.7e-126 456.4 328 70.4
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 2.2e-126 456.1 308 73.4
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 2.9e-126 455.7 307 73.0
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 3.7e-126 455.3 310 73.5
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 4.9e-126 454.9 312 74.4
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 6.4e-126 454.5 305 74.8
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.4e-126 454.5 305 74.4
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 6.4e-126 454.5 310 73.2
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.3e-126 454.1 305 74.4
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.1e-125 453.8 310 73.9
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-125 453.4 305 73.4
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 1.4e-125 453.4 314 72.9
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 4.1e-125 451.8 310 73.2
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 7.0e-125 451.1 310 72.6
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 9.2e-125 450.7 310 74.8
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-124 449.5 305 73.8
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 2.0e-124 449.5 309 73.1
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 2.7e-124 449.1 309 72.5
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 2.7e-124 449.1 309 73.1
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.3e-123 446.0 310 74.2
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 3.0e-123 445.7 310 72.6
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 3.9e-123 445.3 321 71.0
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 5.0e-123 444.9 309 72.2
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 6.6e-123 444.5 304 74.7
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 8.6e-123 444.1 316 70.3
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 1.1e-122 443.7 307 72.6
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 1.5e-122 443.4 308 71.8
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 1.9e-122 443.0 319 70.8
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 3.3e-122 442.2 316 69.9
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 4.3e-122 441.8 309 71.5
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 2.1e-121 439.5 329 68.7
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 2.8e-121 439.1 308 73.7
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 3.6e-121 438.7 316 69.3
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 4.7e-121 438.3 253 83.8
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 4.7e-121 438.3 309 71.8
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 8.1e-121 437.6 317 69.4
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 2.0e-119 433.0 299 72.9
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.4e-119 431.8 260 80.4
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 1.7e-118 429.9 318 68.6
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 2.2e-118 429.5 318 68.6
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 2.9e-118 429.1 318 68.6
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 8.3e-118 427.6 318 68.2
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 3.2e-117 425.6 320 67.5
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 4.1e-117 425.2 325 66.8
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 9.2e-117 424.1 309 70.2
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.1e-116 422.9 248 82.7
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 4.6e-116 421.8 279 75.3
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 3.0e-115 419.1 309 68.9
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.5e-114 416.8 335 66.9
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 1.4e-112 410.2 279 72.8
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 3.7e-110 402.1 319 64.6
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 5.4e-109 398.3 322 63.4
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 1.6e-108 396.7 321 62.9
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 2.7e-108 396.0 304 66.1
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 2.6e-103 379.4 260 71.9
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 4.4e-103 378.6 305 64.3
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 9.9e-103 377.5 217 84.3
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.9e-102 375.9 305 63.3
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 6.6e-99 364.8 332 58.1
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 3.3e-98 362.5 231 75.3
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 4.3e-98 362.1 227 74.0
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 9.6e-98 360.9 319 62.1
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.8e-97 359.4 305 62.3
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 2.9e-94 349.4 309 61.8
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 4.2e-93 345.5 337 52.8
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.2e-92 344.0 308 58.8
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 3.0e-91 339.3 301 59.5
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 8.7e-91 337.8 301 59.5
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 1.3e-89 334.0 206 81.6
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 9.9e-87 324.3 204 78.4
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 6.4e-86 321.6 222 73.0
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.1e-84 316.6 243 64.6
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 5.1e-75 285.4 165 84.2
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 1.1e-74 284.3 278 56.1
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 3.4e-71 272.7 313 48.2
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 5.1e-67 258.8 157 80.9
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 2.8e-65 253.1 171 76.0
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 4.1e-64 249.2 150 80.7
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 9.4e-61 238.0 346 41.0
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 7.4e-58 228.4 170 67.6
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.5e-55 219.2 134 78.4
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.7e-52 209.9 160 67.5
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 1.5e-50 204.1 290 41.0
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 2.2e-49 200.3 131 77.1
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.2e-46 190.3 112 81.2
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.9e-46 189.9 121 76.0
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.5e-46 188.3 121 73.6
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-45 188.0 121 73.6
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-45 188.0 121 73.6
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.2e-45 186.0 121 72.7
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.5e-45 185.7 118 74.6
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.2e-45 185.3 116 77.6
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.6e-44 183.0 118 74.6
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.6e-44 183.0 118 75.4
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.7e-43 178.7 118 71.2
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-39 167.2 92 88.0
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 2.7e-39 166.8 241 44.8
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 5.5e-37 159.1 102 72.5
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-36 157.5 298 38.3
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 2.7e-36 156.8 102 73.5
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.0e-36 155.2 169 51.5
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 9.5e-29 131.7 84 73.8
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 3.4e-26 123.2 91 63.7
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 8.3e-25 118.6 137 50.4
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 4.1e-24 116.3 95 61.1
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 4.1e-24 116.3 95 61.1
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-23 114.8 64 89.1
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.0e-22 109.4 64 85.9
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.4e-19 101.3 74 73.0
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 2.2e-17 94.0 64 68.8
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 6.4e-17 92.4 50 88.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 6.4e-17 92.4 50 88.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-16 90.9 50 86.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.8e-16 90.9 50 86.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 4.1e-16 89.7 47 87.2
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 4.6e-15 86.3 230 30.0
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-13 81.3 93 49.5
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-13 80.9 93 50.5
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.3e-13 80.1 93 49.5
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 4.3e-13 79.7 81 50.6
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.3e-11 73.9 103 43.7
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 8.9e-11 72.0 78 48.7
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 3.2e-08 63.5 93 44.1
QL05p086362 Quercus lobata HOM05D003958 ORTHO05D044828 1.7e-06 57.8 46 60.9


User provided reference genes

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