Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 1.2e-118 429.9 212 100.0
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 1.4e-84 316.6 216 74.5
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 1.4e-79 300.1 219 72.1
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.4e-76 290.0 209 68.9
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 5.4e-76 288.1 208 70.2
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 3.5e-75 285.4 202 70.3
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 4.6e-75 285.0 202 70.3
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 1.0e-74 283.9 202 70.3
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 3.9e-74 282.0 188 74.5
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 5.6e-73 278.1 210 66.2
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 2.4e-71 272.7 190 71.6
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 4.5e-70 268.5 218 65.6
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 5.8e-70 268.1 187 70.6
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 5.8e-70 268.1 193 70.5
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 1.9e-68 263.1 216 65.3
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 2.5e-68 262.7 204 64.7
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 4.2e-68 261.9 182 70.3
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 5.5e-68 261.5 190 68.9
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 9.3e-68 260.8 195 66.2
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 1.2e-67 260.4 171 74.3
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 7.9e-67 257.7 214 62.6
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 7.9e-67 257.7 180 70.0
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 3.0e-66 255.8 217 63.6
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 5.1e-66 255.0 210 63.8
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 5.1e-66 255.0 209 65.6
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 6.7e-66 254.6 198 66.2
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 6.7e-66 254.6 190 66.8
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 6.7e-66 254.6 190 66.8
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 6.7e-66 254.6 163 76.7
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 1.9e-65 253.1 180 69.4
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 3.3e-65 252.3 213 60.6
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 4.3e-65 251.9 158 74.7
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 1.3e-64 250.4 195 68.2
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 1.3e-64 250.4 174 71.3
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 2.8e-64 249.2 173 72.8
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 6.2e-64 248.1 162 75.3
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 6.2e-64 248.1 146 80.8
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 8.2e-64 247.7 187 67.9
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 1.4e-63 246.9 178 68.5
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 1.8e-63 246.5 169 71.6
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.8e-63 246.5 230 57.8
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 2.4e-63 246.1 176 71.6
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 3.1e-63 245.7 171 69.6
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 3.1e-63 245.7 146 80.8
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 3.1e-63 245.7 171 71.9
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 5.3e-63 245.0 145 79.3
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 6.9e-63 244.6 162 72.8
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 1.2e-62 243.8 196 65.8
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 2.6e-62 242.7 219 58.9
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 3.4e-62 242.3 190 63.7
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 3.4e-62 242.3 172 70.3
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 4.5e-62 241.9 191 68.6
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 5.8e-62 241.5 174 69.5
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 7.6e-62 241.1 162 71.6
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 7.6e-62 241.1 182 64.3
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 1.3e-61 240.4 149 78.5
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.3e-61 240.4 187 65.8
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 1.7e-61 240.0 191 62.3
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 1.7e-61 240.0 174 67.8
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.2e-61 239.6 187 66.3
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 2.9e-61 239.2 216 57.9
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 3.8e-61 238.8 146 81.5
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 1.4e-60 236.9 175 69.1
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.4e-60 236.9 181 64.1
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.9e-60 236.5 172 68.0
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 1.9e-60 236.5 216 62.5
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 3.2e-60 235.7 171 69.6
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 4.2e-60 235.3 226 56.6
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 4.2e-60 235.3 221 54.8
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 4.2e-60 235.3 156 71.8
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 9.3e-60 234.2 150 73.3
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.6e-59 233.4 208 60.6
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 1.6e-59 233.4 174 67.2
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 2.1e-59 233.0 162 71.6
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 2.7e-59 232.6 150 73.3
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 3.5e-59 232.3 211 57.8
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 1.3e-58 230.3 173 69.4
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 3.0e-58 229.2 162 67.3
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 5.1e-58 228.4 162 66.7
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 8.7e-58 227.6 150 72.0
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 8.7e-58 227.6 150 72.0
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 1.9e-57 226.5 144 73.6
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 4.3e-57 225.3 162 66.7
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 4.3e-57 225.3 162 66.7
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 5.7e-57 224.9 162 66.0
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 7.4e-57 224.6 144 72.9
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 7.4e-57 224.6 179 65.4
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 8.2e-56 221.1 141 74.5
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.4e-55 220.3 180 65.6
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 5.3e-55 218.4 143 71.3
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 3.4e-54 215.7 126 82.5
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 5.9e-54 214.9 175 64.0
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 1.1e-52 210.7 146 70.5
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 5.1e-50 201.8 126 77.0
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.5e-49 200.3 172 61.0
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 3.3e-49 199.1 124 75.8
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 3.3e-49 199.1 124 77.4
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 1.7e-48 196.8 182 58.8
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 6.9e-47 191.4 181 57.5
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 5.9e-46 188.3 153 62.1
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 8.5e-45 184.5 139 60.4
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.4e-44 183.7 139 61.9
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 5.5e-44 181.8 140 62.9
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 9.4e-44 181.0 160 60.6
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 5.7e-41 171.8 181 53.0
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 1.7e-40 170.2 176 54.5
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 6.3e-40 168.3 138 65.9
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 2.4e-39 166.4 162 53.1
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 3.1e-39 166.0 154 55.2
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 9.1e-39 164.5 139 58.3
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 4.5e-38 162.2 162 53.7
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 5.9e-38 161.8 114 73.7
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.2e-37 159.8 100 74.0
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 6.5e-37 158.3 108 68.5
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 3.2e-36 156.0 123 63.4
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.2e-36 156.0 123 63.4
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 4.2e-36 155.6 120 65.8
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 5.5e-36 155.2 99 73.7
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 9.4e-36 154.5 105 74.3
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 9.4e-36 154.5 133 57.9
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 1.4e-34 150.6 101 70.3
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 5.2e-34 148.7 116 62.1
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 1.0e-29 134.4 99 59.6
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 7.2e-28 128.3 112 55.4
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 1.5e-25 120.6 72 79.2
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 4.4e-25 119.0 72 77.8
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 9.8e-25 117.9 72 77.8
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 4.5e-22 109.0 64 75.0
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 7.7e-22 108.2 63 76.2
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 1.3e-21 107.5 134 39.6
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 2.9e-21 106.3 63 71.4
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 7.2e-20 101.7 75 64.0
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 8.0e-19 98.2 77 66.2
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 4.0e-18 95.9 68 69.1
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 4.0e-18 95.9 76 59.2
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 1.3e-16 90.9 85 58.8
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 9.2e-15 84.7 86 47.7
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 3.5e-14 82.8 58 58.6
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 5.9e-14 82.0 83 54.2
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 3.8e-13 79.3 61 65.6
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 2.8e-11 73.2 80 45.0
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 3.0e-10 69.7 44 75.0
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 1.4e-07 60.8 96 37.5
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 1.8e-07 60.5 33 75.8
Glyma.19G005502 Glycine max HOM05D005182 ORTHO05D006631 1.8e-07 60.5 49 63.3


User provided reference genes

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