Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 1.2e-130 469.9 262 100.0
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 1.1e-89 334.0 262 74.0
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 2.2e-87 326.2 261 69.3
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.6e-85 320.1 262 67.2
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 5.9e-80 301.6 263 70.0
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 2.5e-78 296.2 262 68.3
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 2.1e-77 293.1 256 62.5
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 3.6e-77 292.4 263 62.4
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 1.5e-75 287.0 264 60.6
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 3.3e-75 285.8 247 62.3
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 5.7e-75 285.0 264 60.6
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 1.8e-73 280.0 271 59.0
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 7.0e-73 278.1 269 58.4
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 1.2e-72 277.3 256 59.0
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 4.7e-69 265.4 303 57.1
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 1.0e-68 264.2 279 59.5
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 1.4e-68 263.8 254 58.7
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 8.8e-68 261.2 246 63.8
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 3.4e-67 259.2 264 57.6
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 5.7e-67 258.5 217 62.7
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 1.7e-66 256.9 252 63.5
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 3.7e-66 255.8 243 60.1
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 6.3e-66 255.0 251 61.8
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.1e-65 254.2 223 69.1
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 1.8e-65 253.4 277 59.9
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 3.1e-65 252.7 252 61.1
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 4.1e-65 252.3 227 59.5
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 5.3e-65 251.9 246 61.0
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 7.0e-65 251.5 271 53.5
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 1.2e-64 250.8 253 58.1
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 2.0e-64 250.0 260 56.9
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 2.2e-63 246.5 253 57.7
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 2.2e-63 246.5 253 58.1
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 2.9e-63 246.1 254 55.9
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 2.9e-63 246.1 299 53.8
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 3.2e-62 242.7 258 54.3
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 7.2e-62 241.5 262 51.9
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 9.4e-62 241.1 240 61.2
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 1.6e-61 240.4 246 57.3
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 2.1e-61 240.0 255 53.7
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 2.7e-61 239.6 254 60.6
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 2.7e-61 239.6 265 56.2
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 4.7e-61 238.8 237 59.1
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 6.1e-61 238.4 254 57.9
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 1.0e-60 237.7 260 55.4
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 1.8e-60 236.9 257 57.6
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 5.2e-60 235.3 264 52.3
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 5.2e-60 235.3 249 60.2
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 6.8e-60 235.0 273 55.7
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 1.2e-59 234.2 279 55.9
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 2.0e-59 233.4 257 60.7
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 2.6e-59 233.0 249 59.4
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 5.7e-59 231.9 268 53.7
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 7.5e-59 231.5 247 58.7
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 7.5e-59 231.5 238 60.5
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 7.5e-59 231.5 274 55.5
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.7e-58 230.3 260 59.6
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.1e-57 227.6 266 50.0
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.8e-57 226.9 249 59.0
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 1.8e-57 226.9 265 56.6
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 4.1e-57 225.7 272 54.4
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 1.6e-56 223.8 281 53.0
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 3.5e-56 222.6 258 57.4
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.7e-56 221.5 276 53.6
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 5.0e-55 218.8 273 49.5
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 6.6e-55 218.4 255 55.3
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 1.9e-54 216.9 258 52.7
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 2.5e-54 216.5 262 54.2
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 7.2e-54 214.9 269 53.2
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 9.5e-54 214.5 214 61.7
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 9.5e-54 214.5 264 48.5
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.6e-53 213.8 256 56.2
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 1.6e-53 213.8 277 51.6
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 4.7e-53 212.2 271 52.8
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 1.8e-52 210.3 219 58.9
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 2.3e-52 209.9 221 57.0
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 4.0e-52 209.1 210 59.0
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 4.0e-52 209.1 252 52.4
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 5.2e-52 208.8 268 55.6
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-51 207.6 215 58.6
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 3.4e-51 206.1 260 50.0
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 4.4e-51 205.7 219 58.9
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 4.4e-51 205.7 206 56.8
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 5.7e-51 205.3 215 56.7
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 5.7e-51 205.3 286 46.9
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 9.8e-51 204.5 232 56.9
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 2.2e-50 203.4 234 56.8
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.8e-50 203.0 228 57.0
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 2.8e-50 203.0 265 50.9
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 6.3e-50 201.8 221 56.6
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 1.1e-49 201.1 279 45.9
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 1.4e-49 200.7 268 50.7
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.8e-49 200.3 249 47.0
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 5.4e-49 198.7 213 56.8
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 5.4e-49 198.7 219 58.4
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 9.2e-49 198.0 216 57.4
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 9.2e-49 198.0 255 48.6
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 2.0e-48 196.8 266 50.0
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 2.7e-48 196.4 260 51.5
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 7.8e-48 194.9 250 55.2
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.7e-47 193.7 223 55.6
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 2.9e-47 193.0 222 55.0
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 6.6e-47 191.8 253 52.6
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 1.9e-46 190.3 225 55.6
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 9.5e-46 188.0 244 45.5
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 6.1e-45 185.3 225 49.8
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 4.0e-44 182.6 103 79.6
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 7.5e-43 178.3 253 50.2
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 7.5e-43 178.3 250 44.8
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 4.9e-42 175.6 240 45.0
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 4.9e-42 175.6 245 45.7
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 1.4e-41 174.1 259 40.5
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 2.4e-41 173.3 242 45.0
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 3.2e-41 172.9 139 60.4
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 7.0e-41 171.8 120 65.8
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 7.0e-41 171.8 242 45.9
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 4.6e-40 169.1 246 44.3
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.3e-39 167.5 238 44.5
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 2.3e-39 166.8 255 41.6
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 3.0e-39 166.4 238 45.8
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 5.0e-39 165.6 110 67.3
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 5.0e-39 165.6 103 73.8
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 8.6e-39 164.9 252 43.3
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 2.5e-38 163.3 236 45.3
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 8.0e-37 158.3 244 42.6
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 9.8e-35 151.4 260 43.8
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 9.8e-35 151.4 260 40.0
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 9.8e-35 151.4 248 42.3
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 1.3e-34 151.0 250 42.8
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 4.3e-30 136.0 101 62.4
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 3.6e-29 132.9 101 61.4
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 6.2e-29 132.1 268 38.8
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 1.4e-28 131.0 118 54.2
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 1.4e-28 131.0 118 54.2
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 8.9e-28 128.3 230 37.0
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 1.5e-27 127.5 226 38.9
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 1.7e-26 124.0 278 36.7
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 6.4e-26 122.1 90 63.3
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 8.3e-26 121.7 248 37.1
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 7.1e-25 118.6 105 52.4
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 7.1e-25 118.6 84 64.3
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 2.7e-24 116.7 225 35.6
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 3.5e-24 116.3 250 34.0
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 7.8e-24 115.2 102 54.9
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 1.3e-23 114.4 86 59.3
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 1.1e-22 111.3 90 57.8
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 5.6e-22 109.0 287 29.6
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 1.2e-19 101.3 86 54.7
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 2.0e-19 100.5 77 62.3
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 3.2e-17 93.2 71 63.4
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 3.2e-17 93.2 176 38.6
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 8.1e-13 78.6 110 40.9
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 3.1e-12 76.6 107 40.2
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 4.6e-08 62.8 74 50.0
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 2.5e-06 57.0 82 41.5
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 4.3e-06 56.2 74 54.1


User provided reference genes

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