Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 5.0e-232 807.4 393 100.0
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.0e-160 570.5 387 69.8
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 7.3e-159 564.3 399 69.2
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 4.9e-155 551.6 388 68.0
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 1.4e-154 550.1 388 67.8
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 3.2e-154 548.9 387 68.7
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 3.1e-149 532.3 386 64.8
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 4.4e-148 528.5 387 64.1
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.4e-146 523.5 385 65.2
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.2e-145 520.4 387 63.3
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 5.6e-143 511.5 387 63.0
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.6e-142 510.0 386 63.2
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 6.2e-142 508.1 387 62.3
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 3.1e-141 505.8 386 61.9
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 4.5e-140 501.9 386 62.7
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 3.8e-139 498.8 387 62.5
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 3.2e-138 495.7 385 61.6
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 5.4e-138 495.0 386 60.9
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 7.1e-138 494.6 386 60.4
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 1.6e-137 493.4 386 62.2
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 6.7e-136 488.0 388 60.6
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.3e-134 483.8 385 59.2
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.3e-134 483.8 384 61.5
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 1.6e-134 483.4 384 59.4
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 4.8e-134 481.9 386 60.1
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 8.1e-134 481.1 386 60.4
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.8e-133 479.9 386 59.6
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 4.0e-133 478.8 390 57.9
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 4.5e-132 475.3 386 58.8
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 5.8e-132 474.9 386 58.0
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 5.8e-132 474.9 389 58.9
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 2.2e-131 473.0 386 57.5
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 2.9e-131 472.6 386 58.8
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 8.4e-131 471.1 391 57.3
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.1e-130 470.7 384 57.8
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 4.2e-130 468.8 386 57.8
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 4.2e-130 468.8 386 57.3
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 5.5e-130 468.4 384 59.9
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 9.3e-130 467.6 386 57.8
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.6e-129 466.8 386 57.8
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 6.0e-129 464.9 388 58.5
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.3e-128 463.8 387 56.6
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.9e-128 462.2 386 57.3
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 2.5e-127 459.5 385 58.7
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 3.3e-127 459.1 384 58.9
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 4.3e-127 458.8 389 56.3
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 4.3e-127 458.8 389 56.6
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 4.3e-127 458.8 389 57.1
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 7.4e-127 458.0 386 56.2
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 9.6e-127 457.6 390 57.9
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 2.1e-126 456.4 387 55.6
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 6.2e-126 454.9 387 56.3
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 1.4e-125 453.8 385 55.3
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.8e-125 453.4 390 57.9
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 6.9e-125 451.4 386 55.7
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.2e-124 450.7 385 57.7
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.2e-124 450.7 387 57.9
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.2e-124 450.7 308 69.2
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 1.5e-124 450.3 386 57.3
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 2.0e-124 449.9 387 55.8
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 2.6e-124 449.5 383 56.7
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 2.6e-124 449.5 383 56.7
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 3.4e-124 449.1 390 55.6
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 7.6e-124 448.0 386 55.7
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.0e-123 447.6 385 57.1
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 1.7e-123 446.8 387 55.6
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 2.9e-123 446.0 383 55.1
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 3.8e-123 445.7 387 56.3
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 4.9e-123 445.3 386 56.7
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 8.4e-123 444.5 385 55.8
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.5e-122 443.0 385 57.1
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 4.2e-122 442.2 386 55.2
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 9.3e-122 441.0 383 56.4
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 9.3e-122 441.0 383 56.4
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 9.3e-122 441.0 387 54.3
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 4.6e-121 438.7 391 54.2
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 7.9e-121 438.0 386 54.4
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 7.9e-121 438.0 387 54.3
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.0e-120 437.6 385 54.3
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 3.9e-120 435.6 386 54.1
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 6.7e-120 434.9 389 54.8
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 2.5e-119 433.0 386 54.1
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 4.3e-119 432.2 386 53.1
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 9.6e-119 431.0 383 56.1
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 9.6e-119 431.0 388 54.6
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.5e-116 423.7 386 54.7
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 4.5e-116 422.2 383 52.0
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.3e-115 420.6 381 54.9
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 6.5e-115 418.3 380 53.9
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 3.2e-114 416.0 381 54.3
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 9.3e-114 414.5 401 50.9
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 9.7e-111 404.4 384 50.8
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.2e-108 397.5 381 53.0
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 5.9e-108 395.2 386 52.6
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 8.5e-107 391.3 387 51.2
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 7.2e-106 388.3 381 51.4
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 3.6e-105 386.0 394 50.0
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 4.6e-105 385.6 307 61.2
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 5.1e-104 382.1 300 60.0
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 9.7e-103 377.9 312 59.9
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.2e-102 376.7 384 49.2
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.8e-101 373.6 312 59.3
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.6e-100 369.8 389 48.1
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 2.9e-99 366.3 381 48.8
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 2.9e-99 366.3 381 48.8
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 2.9e-99 366.3 381 48.8
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 5.0e-99 365.5 257 67.3
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.0e-96 357.8 391 46.8
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 5.9e-92 342.0 388 46.9
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 7.7e-92 341.7 404 45.5
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.5e-90 337.4 391 46.0
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 5.5e-90 335.5 404 44.8
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 8.0e-89 331.6 383 45.7
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 7.5e-87 325.1 385 44.9
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.3e-86 324.3 249 62.7
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 3.7e-78 296.2 387 42.6
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 2.7e-76 290.0 395 40.5
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 4.7e-73 279.3 383 41.5
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 1.0e-72 278.1 310 45.2
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 7.5e-71 271.9 374 40.9
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 8.3e-70 268.5 381 38.3
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.0e-67 261.5 377 41.4
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 6.6e-67 258.8 383 37.1
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 1.4e-64 251.1 316 44.3
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.8e-64 250.8 314 43.0
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 2.4e-61 240.4 384 39.1
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 5.0e-59 232.6 237 52.3
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 4.7e-57 226.1 170 60.0
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.5e-50 204.5 145 64.8
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 4.6e-44 183.0 421 30.6
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 5.6e-42 176.0 122 63.1
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 3.1e-40 170.2 455 29.7
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 3.9e-35 153.3 108 64.8
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 3.6e-25 120.2 83 62.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 7.6e-23 112.5 429 26.6
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 1.6e-20 104.8 94 56.4
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 2.7e-12 77.4 102 39.2
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 7.4e-10 69.3 45 60.0
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 2.4e-08 64.3 43 58.1
SMO202G0038 Selaginella moellendorffii HOM05D038926 ORTHO05D006432 6.9e-08 62.8 232 25.0
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 3.4e-07 60.5 97 35.1


User provided reference genes

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