Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.1e-110 403.3 196 100.0
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.8e-95 352.1 196 88.3
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.3e-83 312.0 175 88.6
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 3.6e-74 282.0 196 71.9
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 7.8e-69 264.2 200 68.0
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 3.4e-64 248.8 202 63.9
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.9e-60 235.3 133 87.2
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 3.1e-57 225.7 167 66.5
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 6.4e-55 218.0 199 56.8
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 4.2e-54 215.3 198 57.6
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 2.1e-53 213.0 199 56.8
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 4.6e-53 211.8 198 57.6
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 6.0e-53 211.5 202 56.4
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.3e-52 209.5 234 48.7
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 5.1e-52 208.4 198 56.6
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 6.6e-52 208.0 202 53.5
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 5.6e-51 204.9 198 54.0
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 5.6e-51 204.9 200 55.5
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 7.3e-51 204.5 198 54.0
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 1.6e-50 203.4 203 53.2
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 2.1e-50 203.0 200 53.0
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 2.1e-50 203.0 198 53.5
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 2.8e-50 202.6 199 55.8
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 1.4e-49 200.3 198 52.5
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 4.0e-49 198.7 210 51.9
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 4.0e-49 198.7 205 51.7
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.5e-48 196.8 198 54.5
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 2.6e-48 196.1 180 56.1
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 2.6e-48 196.1 180 56.1
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 4.4e-48 195.3 204 52.5
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 4.4e-48 195.3 206 50.0
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 7.6e-48 194.5 198 53.0
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 1.3e-47 193.7 196 52.6
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 1.3e-47 193.7 201 51.7
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.3e-47 193.7 153 66.0
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 2.9e-47 192.6 201 50.2
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 1.1e-46 190.7 207 50.2
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.4e-46 190.3 201 51.7
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 1.9e-46 189.9 202 50.5
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 4.2e-46 188.7 199 51.3
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 7.1e-46 188.0 198 50.0
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.2e-45 187.2 198 51.0
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 2.1e-45 186.4 204 48.0
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 3.5e-45 185.7 203 50.2
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 7.8e-45 184.5 201 49.8
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.7e-44 183.3 200 53.0
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 3.9e-44 182.2 205 49.8
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 6.6e-44 181.4 203 50.7
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 8.7e-44 181.0 198 48.0
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.1e-43 180.6 199 49.2
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.5e-43 179.5 199 48.7
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 2.5e-43 179.5 203 47.8
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 3.3e-43 179.1 199 50.3
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.3e-43 179.1 200 49.0
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 3.3e-43 179.1 202 47.0
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 4.3e-43 178.7 203 49.3
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 9.6e-43 177.6 154 56.5
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.3e-42 177.2 199 48.7
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 6.2e-42 174.9 207 46.9
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 8.1e-42 174.5 198 44.9
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 1.4e-41 173.7 198 48.5
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 1.4e-41 173.7 196 47.4
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 3.1e-41 172.6 204 47.1
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 5.3e-41 171.8 198 43.9
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.5e-40 170.2 200 46.5
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.5e-40 170.2 198 47.0
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 1.5e-40 170.2 203 47.8
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.0e-40 169.9 198 42.9
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 3.4e-40 169.1 206 45.1
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 5.8e-40 168.3 196 46.4
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 9.9e-40 167.5 209 45.0
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 1.3e-39 167.2 209 45.9
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 1.7e-39 166.8 203 47.3
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 3.8e-39 165.6 221 42.5
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 4.9e-39 165.2 221 43.0
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 6.4e-39 164.9 200 48.5
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 2.4e-38 162.9 215 40.9
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.4e-38 162.9 198 48.0
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 2.4e-38 162.9 198 48.0
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 5.4e-38 161.8 198 46.5
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 9.3e-38 161.0 198 47.0
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 9.3e-38 161.0 198 47.0
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 3.5e-37 159.1 196 41.8
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 3.0e-36 156.0 157 52.2
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 3.0e-36 156.0 225 38.7
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 6.7e-36 154.8 200 48.0
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 2.5e-35 152.9 196 45.9
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 5.6e-35 151.8 198 44.4
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 7.4e-35 151.4 203 44.3
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.1e-34 149.8 141 53.2
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 3.7e-34 149.1 199 40.7
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 6.2e-34 148.3 200 43.0
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.1e-33 147.5 199 39.2
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.1e-33 147.5 199 45.2
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.1e-33 147.5 168 48.8
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.8e-33 146.7 209 38.3
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.8e-33 146.7 203 43.8
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.4e-33 146.4 201 44.3
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 3.1e-33 146.0 161 50.9
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 4.0e-33 145.6 199 44.2
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 5.3e-33 145.2 199 44.7
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 6.9e-33 144.8 198 46.5
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 9.0e-33 144.4 199 44.7
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 3.4e-32 142.5 200 41.0
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 3.4e-32 142.5 190 41.1
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 4.5e-32 142.1 199 43.7
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 7.6e-32 141.4 116 58.6
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 1.3e-31 140.6 196 45.4
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 2.2e-31 139.8 200 46.5
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 2.9e-31 139.4 197 39.1
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 3.8e-31 139.0 197 41.1
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 3.8e-31 139.0 197 41.1
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 1.4e-30 137.1 199 44.2
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.9e-30 136.7 197 40.6
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.9e-30 136.7 198 42.9
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.9e-30 136.7 223 39.0
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 3.2e-30 136.0 207 36.2
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 5.5e-30 135.2 205 38.5
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 5.5e-30 135.2 207 37.7
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 7.1e-30 134.8 205 38.5
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 7.1e-30 134.8 203 42.9
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.1e-29 133.3 201 43.8
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 2.7e-29 132.9 148 50.7
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 6.0e-29 131.7 198 39.4
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 1.0e-28 131.0 211 40.3
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 1.9e-27 126.7 223 34.1
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 3.4e-24 115.9 200 37.5
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 1.0e-23 114.4 179 38.0
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.9e-23 112.8 216 37.5
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 6.5e-23 111.7 210 34.3
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 6.0e-21 105.1 67 73.1
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 5.7e-19 98.6 65 72.3
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 3.4e-16 89.4 104 42.3
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.7e-15 87.0 108 46.3
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 2.2e-15 86.7 86 55.8
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 3.3e-11 72.8 101 39.6
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 5.7e-11 72.0 49 71.4
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 3.1e-09 66.2 76 46.1
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 3.1e-09 66.2 184 29.3
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 4.1e-09 65.9 46 65.2
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 1.2e-08 64.3 76 44.7


User provided reference genes

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