Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.2e-240 834.7 431 100.0
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.4e-208 729.6 386 98.2
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.1e-205 719.9 388 96.9
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 3.2e-176 622.1 376 85.4
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 2.3e-166 589.3 374 79.9
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 3.4e-165 585.5 386 77.2
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 1.3e-164 583.6 386 76.7
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.1e-163 580.5 386 76.4
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 1.2e-162 577.0 387 74.7
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 2.7e-162 575.9 387 75.5
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 4.5e-162 575.1 387 76.5
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 2.9e-161 572.4 387 77.0
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 3.8e-161 572.0 387 78.3
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.9e-160 569.7 387 76.0
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 2.5e-160 569.3 386 75.4
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 4.2e-160 568.5 387 74.9
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 2.8e-159 565.8 388 75.5
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 6.1e-159 564.7 386 75.4
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 6.1e-159 564.7 386 73.8
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 1.8e-158 563.1 387 74.2
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 2.3e-158 562.8 387 74.4
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 3.0e-158 562.4 390 75.4
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 5.2e-158 561.6 387 75.5
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 3.4e-157 558.9 387 74.2
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 5.7e-157 558.1 399 71.9
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.7e-156 556.6 387 73.4
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 6.3e-156 554.7 387 72.4
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 1.4e-155 553.5 389 73.8
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 2.4e-155 552.7 378 74.1
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 5.4e-155 551.6 386 72.8
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 1.2e-154 550.4 387 73.4
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 2.0e-154 549.7 386 72.8
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.0e-153 547.4 411 70.8
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 2.9e-153 545.8 386 72.5
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 6.6e-153 544.7 387 72.6
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 3.3e-152 542.3 386 71.5
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 4.3e-152 542.0 387 72.9
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 5.6e-152 541.6 387 72.9
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 5.6e-152 541.6 387 72.1
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 7.3e-152 541.2 387 72.9
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 9.5e-152 540.8 387 71.8
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 9.5e-152 540.8 387 71.8
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 9.5e-152 540.8 386 72.8
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 1.2e-151 540.4 386 72.5
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 1.2e-151 540.4 386 69.9
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.6e-151 540.0 368 74.7
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 2.1e-151 539.7 387 71.8
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 2.1e-151 539.7 387 71.6
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 4.7e-151 538.5 387 72.6
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 4.7e-151 538.5 386 72.5
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 4.7e-151 538.5 387 72.1
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 1.0e-150 537.3 399 69.9
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 3.1e-150 535.8 447 65.1
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 5.2e-150 535.0 386 71.5
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 2.0e-149 533.1 386 71.0
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 3.4e-149 532.3 387 71.6
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 3.4e-149 532.3 386 69.9
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 2.2e-148 529.6 387 70.8
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 2.9e-148 529.3 387 71.6
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 3.7e-148 528.9 387 70.0
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 8.3e-148 527.7 386 69.7
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 4.1e-147 525.4 386 71.5
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 3.5e-146 522.3 386 68.9
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 3.3e-144 515.8 386 70.2
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.2e-143 513.8 387 69.0
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 8.0e-143 511.1 374 71.7
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 5.2e-142 508.4 352 74.4
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.4e-141 505.4 390 65.6
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 4.4e-141 505.4 343 78.1
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 1.3e-140 503.8 386 68.7
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.2e-140 503.1 387 70.5
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.9e-139 500.0 388 68.0
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 3.5e-138 495.7 358 70.9
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 4.6e-138 495.4 385 68.1
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.3e-137 493.8 387 67.4
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 5.1e-137 491.9 359 69.6
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 6.6e-137 491.5 292 85.3
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 1.9e-136 490.0 438 61.0
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 4.3e-136 488.8 332 77.4
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 1.8e-134 483.4 332 77.1
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 5.2e-134 481.9 390 64.1
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 8.9e-134 481.1 386 65.8
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 1.2e-133 480.7 385 67.8
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 2.6e-133 479.6 386 65.8
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 3.4e-133 479.2 385 66.8
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 9.2e-131 471.1 406 62.6
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.6e-130 468.8 401 63.1
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 7.3e-128 461.5 378 63.5
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 2.1e-127 459.9 387 65.4
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 8.1e-127 458.0 321 71.0
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.4e-125 452.6 388 63.4
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 5.8e-125 451.8 320 70.6
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 1.3e-124 450.7 392 60.5
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.9e-118 428.3 426 57.0
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.2e-116 423.3 366 62.8
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 6.4e-116 421.8 384 57.6
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 3.2e-115 419.5 401 58.4
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 2.7e-114 416.4 342 62.9
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 3.3e-112 409.5 338 65.1
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 4.3e-112 409.1 216 98.1
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 4.8e-111 405.6 384 60.2
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.8e-110 403.7 343 66.5
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 9.3e-107 391.3 386 54.4
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 1.3e-105 387.5 247 79.8
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 5.1e-97 359.0 247 72.1
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.5e-96 357.5 257 71.6
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 1.3e-95 354.4 396 49.7
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 5.0e-92 342.4 393 47.1
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 6.5e-92 342.0 388 48.2
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 4.2e-91 339.3 283 61.1
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.1e-88 331.3 307 60.6
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.3e-81 307.0 359 48.7
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.1e-70 269.6 260 61.2
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 3.5e-69 266.5 225 65.8
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 3.0e-65 253.4 184 73.9
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.7e-55 221.1 353 42.5
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.8e-55 219.5 306 46.1
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.7e-52 211.1 400 39.0
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 9.4e-51 205.3 357 40.1
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 3.6e-50 203.4 198 55.6
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.8e-49 201.1 107 98.1
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.2e-48 198.4 124 83.1
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 1.2e-48 198.4 525 30.7
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 6.8e-41 172.6 406 33.7
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 9.2e-38 162.2 160 57.5
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 1.0e-36 158.7 143 55.9
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.3e-36 158.3 96 86.5
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 9.5e-27 125.6 81 76.5
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 4.7e-26 123.2 79 79.7
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 1.1e-25 122.1 149 51.0
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 4.9e-23 113.2 462 26.8
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 8.3e-23 112.5 98 61.2
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.8e-21 105.9 63 90.5
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.8e-21 105.9 63 90.5
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 2.5e-19 100.9 67 76.1
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 3.6e-18 97.1 74 70.3
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 1.8e-17 94.7 56 83.9
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 8.9e-17 92.4 81 50.6
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.9e-14 84.7 69 71.0
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.4e-14 84.3 55 72.7
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.1e-13 81.3 68 60.3
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.1e-13 81.3 68 60.3
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.7e-13 80.9 50 80.0
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 3.5e-13 80.5 65 70.8
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 1.9e-11 74.7 69 62.3
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 7.6e-08 62.8 43 74.4
GSVIVG01037115001 Vitis vinifera HOM05D004498 ORTHO05D005300 9.9e-08 62.4 57 52.6
AagrBONN_evm.TU.Sc2ySwM_117.318 Anthoceros agrestis HOM05D004498 ORTHO05D005300 3.2e-06 57.4 111 36.0
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 5.4e-06 56.6 159 32.7


User provided reference genes

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