Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 3.9e-131 471.5 236 100.0
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.2e-87 327.0 265 69.8
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 8.4e-86 320.9 242 69.0
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.8e-80 303.1 189 79.4
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 4.2e-77 292.0 168 85.1
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 5.5e-77 291.6 208 75.0
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 7.2e-77 291.2 166 86.7
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 2.1e-76 289.7 157 89.8
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 6.1e-76 288.1 190 76.3
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 7.9e-76 287.7 157 90.4
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.4e-75 287.0 213 71.8
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 1.8e-75 286.6 188 76.6
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 8.8e-75 284.3 220 68.6
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 2.5e-74 282.7 177 81.4
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.3e-74 282.3 195 72.3
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.3e-74 282.3 195 72.3
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.3e-74 282.0 232 64.2
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 5.7e-74 281.6 161 84.5
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 5.7e-74 281.6 196 71.9
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 5.7e-74 281.6 196 72.4
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 5.7e-74 281.6 173 80.9
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 9.7e-74 280.8 214 69.2
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 1.3e-73 280.4 198 73.2
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.3e-73 280.4 185 74.6
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.3e-73 280.4 232 63.8
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.7e-73 280.0 166 81.9
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.7e-73 280.0 166 81.9
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.7e-73 280.0 187 74.3
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.7e-73 280.0 187 74.3
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.7e-73 280.0 187 74.3
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 3.7e-73 278.9 212 67.9
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 4.8e-73 278.5 188 74.5
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 6.3e-73 278.1 227 64.3
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 2.4e-72 276.2 226 62.4
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 2.4e-72 276.2 188 73.9
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 3.1e-72 275.8 191 71.7
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.1e-72 275.8 187 76.5
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 4.1e-72 275.4 228 65.8
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 4.1e-72 275.4 173 78.6
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.1e-72 275.4 173 78.6
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 4.1e-72 275.4 171 78.4
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 5.3e-72 275.0 157 84.1
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 5.3e-72 275.0 228 65.8
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 5.3e-72 275.0 157 84.1
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 5.3e-72 275.0 234 64.1
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 6.9e-72 274.6 234 64.5
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 9.1e-72 274.2 227 65.2
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 9.1e-72 274.2 170 78.8
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 9.1e-72 274.2 233 61.8
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.2e-71 273.9 227 64.8
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.2e-71 273.9 234 64.1
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 1.2e-71 273.9 190 73.7
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 1.5e-71 273.5 224 63.8
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.5e-71 273.5 196 70.9
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 2.0e-71 273.1 227 65.2
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.0e-71 273.1 168 79.2
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 2.0e-71 273.1 179 76.0
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 2.6e-71 272.7 157 83.4
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 2.6e-71 272.7 225 64.4
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.6e-71 272.7 191 72.3
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.6e-71 272.7 171 78.4
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 3.4e-71 272.3 226 65.0
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 4.5e-71 271.9 231 62.8
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 5.9e-71 271.6 222 64.0
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 5.9e-71 271.6 222 64.0
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 7.7e-71 271.2 157 83.4
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 7.7e-71 271.2 202 68.8
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 1.0e-70 270.8 157 84.1
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.7e-70 270.0 222 62.6
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 1.7e-70 270.0 157 83.4
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 2.2e-70 269.6 226 63.3
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 2.2e-70 269.6 232 62.5
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 2.9e-70 269.2 235 60.4
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 3.8e-70 268.9 157 84.1
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 6.5e-70 268.1 222 64.0
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 6.5e-70 268.1 226 64.6
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 6.5e-70 268.1 210 65.7
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 8.5e-70 267.7 227 65.2
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 8.5e-70 267.7 147 89.1
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 8.5e-70 267.7 198 70.7
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 8.5e-70 267.7 209 66.5
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 8.5e-70 267.7 169 76.9
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 8.5e-70 267.7 176 75.6
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.4e-69 266.9 211 66.4
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 2.5e-69 266.2 157 81.5
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 3.2e-69 265.8 169 77.5
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 3.2e-69 265.8 157 81.5
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 5.5e-69 265.0 235 60.9
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 5.5e-69 265.0 194 71.6
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 3.6e-68 262.3 232 60.3
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 4.7e-68 261.9 174 73.0
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 4.7e-68 261.9 234 59.4
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 6.1e-68 261.5 224 62.1
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 6.1e-68 261.5 234 59.4
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 1.4e-67 260.4 224 62.9
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 2.3e-67 259.6 236 59.7
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 6.7e-67 258.1 248 57.7
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.1e-66 257.3 141 88.7
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 2.0e-66 256.5 169 78.1
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 4.4e-66 255.4 217 65.9
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 1.3e-65 253.8 232 61.2
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 4.8e-65 251.9 157 77.1
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.8e-64 250.0 221 60.2
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 1.8e-64 250.0 187 69.5
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 3.1e-64 249.2 157 76.4
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 3.1e-64 249.2 179 70.9
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 4.1e-64 248.8 138 87.7
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 5.3e-64 248.4 216 61.1
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.0e-63 246.5 146 80.8
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 4.5e-63 245.4 155 79.4
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 7.7e-63 244.6 166 72.9
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.0e-62 244.2 172 68.0
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 2.9e-62 242.7 154 76.6
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 6.5e-62 241.5 203 59.1
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 8.5e-62 241.1 237 57.0
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.5e-62 241.1 229 57.6
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 1.9e-61 240.0 157 72.0
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 3.2e-61 239.2 212 57.1
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 5.5e-61 238.4 157 71.3
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 7.2e-61 238.0 165 70.9
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.0e-59 234.2 181 68.5
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 3.0e-59 232.6 127 87.4
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 8.8e-59 231.1 155 68.4
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 2.0e-58 229.9 204 57.4
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 9.7e-58 227.6 150 73.3
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 6.3e-57 224.9 156 67.3
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 6.3e-57 224.9 139 77.7
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 1.8e-56 223.4 138 73.9
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.2e-55 220.7 133 81.2
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 3.5e-55 219.2 132 78.8
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 5.0e-54 215.3 127 79.5
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.5e-54 214.9 220 55.5
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.6e-50 203.0 208 54.3
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 6.3e-49 198.4 187 58.3
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 2.4e-48 196.4 143 64.3
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 3.5e-47 192.6 126 75.4
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 1.5e-45 187.2 151 64.2
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 2.5e-45 186.4 195 54.9
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 9.4e-45 184.5 106 85.8
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 1.6e-44 183.7 145 57.9
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.6e-44 182.6 182 55.5
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 4.7e-44 182.2 179 57.0
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 6.1e-44 181.8 163 58.9
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 1.1e-40 171.0 97 82.5
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 3.1e-40 169.5 97 82.5
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 3.8e-38 162.5 138 55.8
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-35 154.1 105 75.2
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 1.7e-33 147.1 77 94.8
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 3.7e-33 146.0 143 50.3
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.9e-33 145.6 160 51.2
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-32 144.1 77 90.9
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 1.4e-32 144.1 137 56.2
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 2.0e-31 140.2 74 87.8
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.9e-31 138.7 195 44.6
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.7e-30 137.1 198 44.9
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 2.9e-25 119.8 80 75.0
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.6e-23 114.0 91 59.3
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.5e-21 107.5 72 75.0
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 2.5e-21 106.7 89 56.2
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 1.2e-20 104.4 85 57.6
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 4.4e-18 95.9 89 61.8
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 3.7e-17 92.8 47 91.5
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 4.9e-17 92.4 70 61.4
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 3.0e-14 83.2 52 76.9
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 3.9e-14 82.8 125 44.8
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 1.9e-13 80.5 42 90.5
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 2.5e-13 80.1 42 88.1
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 2.0e-10 70.5 37 86.5
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 4.1e-08 62.8 32 93.8
SalBow6G0100 Salvia bowleyana HOM05D004281 ORTHO05D004839 1.2e-07 61.2 102 42.2
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 2.7e-07 60.1 32 84.4
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 4.6e-07 59.3 40 80.0
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 4.6e-07 59.3 40 80.0
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 7.8e-07 58.5 42 66.7
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 1.0e-06 58.2 35 74.3
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 3.9e-06 56.2 91 36.3


User provided reference genes

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