Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 0.0e+00 1196.8 614 100.0
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 9.4e-262 906.7 619 75.1
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.5e-259 899.4 607 75.8
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.2e-258 895.6 616 75.8
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.4e-257 892.1 613 76.0
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 2.6e-256 888.6 619 74.5
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 3.9e-252 874.8 619 73.0
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 3.5e-248 861.7 616 73.1
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.9e-247 858.6 614 72.5
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 3.8e-247 858.2 601 75.4
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.9e-246 855.9 610 73.4
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 2.1e-245 852.4 607 73.5
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.1e-245 852.4 619 71.6
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 2.1e-245 852.4 603 74.0
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.6e-245 851.7 592 72.8
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.0e-244 850.1 587 73.9
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.0e-244 850.1 619 71.4
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 1.4e-244 849.7 605 73.2
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.4e-244 849.7 607 73.3
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 3.0e-244 848.6 621 71.5
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 5.2e-244 847.8 619 71.4
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 1.2e-243 846.7 598 73.9
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.5e-243 846.3 593 73.5
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 2.6e-243 845.5 605 73.4
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 5.7e-243 844.3 571 75.7
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 5.7e-243 844.3 595 73.8
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 7.5e-243 844.0 589 73.7
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.7e-242 842.8 599 73.6
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.2e-242 842.4 571 75.5
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 2.2e-242 842.4 580 75.9
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.2e-242 842.4 600 73.3
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 2.8e-242 842.0 595 72.9
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.1e-241 840.1 612 72.2
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.4e-241 839.7 604 72.5
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.1e-241 838.6 596 74.0
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 4.1e-241 838.2 602 71.9
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 2.0e-240 835.9 609 72.6
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 3.5e-240 835.1 609 71.6
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.0e-239 833.6 595 72.4
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 1.0e-239 833.6 595 72.4
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.0e-239 833.6 593 73.2
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.0e-239 833.6 608 72.5
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 1.7e-239 832.8 594 72.2
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.7e-239 832.8 633 70.3
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 6.5e-239 830.9 595 72.3
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.5e-238 829.7 633 69.8
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.9e-238 829.3 617 72.0
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 2.5e-238 828.9 585 72.5
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 3.2e-238 828.6 591 73.8
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.2e-238 828.6 613 71.3
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.2e-238 828.2 572 74.7
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.5e-238 827.8 579 74.8
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.2e-237 826.6 598 72.9
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.2e-237 826.6 614 70.5
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.2e-237 826.6 612 70.9
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 6.1e-237 824.3 579 74.4
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.4e-236 823.2 594 72.6
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 3.0e-236 822.0 603 71.6
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 5.2e-236 821.2 603 71.6
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 6.8e-236 820.8 595 71.9
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 1.2e-235 820.1 619 69.1
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.2e-235 820.1 610 71.0
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 2.0e-235 819.3 597 72.2
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 4.4e-235 818.1 594 72.2
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 9.8e-235 817.0 600 71.7
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.3e-234 816.6 604 70.2
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 3.7e-234 815.1 574 73.7
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 8.3e-234 813.9 574 73.5
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.3e-231 806.6 609 69.5
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.7e-231 806.2 609 69.5
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 3.8e-231 805.1 576 71.4
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.1e-230 803.5 595 70.6
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 1.5e-230 803.1 594 70.4
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 4.2e-230 801.6 616 67.9
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 5.2e-228 794.7 609 67.8
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 1.5e-227 793.1 574 72.0
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 2.0e-227 792.7 600 68.0
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.2e-226 789.3 615 68.1
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.4e-225 785.8 568 71.3
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.0e-223 780.4 524 76.3
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 7.3e-222 774.2 600 67.3
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 2.1e-221 772.7 587 68.0
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 4.0e-220 768.5 579 68.6
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 6.8e-220 767.7 597 66.5
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 3.4e-219 765.4 555 72.4
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.4e-219 765.0 610 65.4
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 7.5e-219 764.2 599 67.6
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 9.8e-219 763.8 537 73.7
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.7e-218 763.1 600 67.0
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 8.3e-218 760.8 670 62.2
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 2.4e-217 759.2 607 65.9
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 4.1e-217 758.4 579 67.9
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 5.4e-217 758.1 579 67.9
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 5.4e-217 758.1 579 67.9
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 7.0e-217 757.7 579 67.9
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.0e-216 756.1 598 66.7
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.7e-216 755.7 596 67.4
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 6.0e-216 754.6 595 66.9
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.7e-215 753.1 594 67.2
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.7e-215 753.1 604 66.1
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.5e-214 749.2 595 66.2
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 9.5e-214 747.3 609 65.4
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.1e-213 746.1 614 65.1
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 3.6e-213 745.3 557 69.3
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 3.6e-213 745.3 557 69.3
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.8e-212 743.0 597 66.2
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 9.8e-211 737.3 625 64.0
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 3.7e-210 735.3 581 68.3
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.4e-209 733.4 616 64.6
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.4e-209 733.4 588 66.0
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.0e-207 727.2 591 65.5
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 1.0e-207 727.2 594 65.2
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.3e-207 726.9 581 65.7
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 5.1e-207 724.9 597 65.0
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.1e-206 723.8 592 65.0
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.1e-206 723.8 592 65.0
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 4.3e-206 721.8 595 66.4
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.2e-205 720.3 606 63.2
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.6e-203 712.6 601 65.4
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.1e-201 707.2 530 69.1
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.2e-200 703.7 520 69.2
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.0e-199 699.1 560 64.5
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 7.3e-198 694.5 593 62.7
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 8.9e-196 687.6 591 62.8
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.5e-195 686.8 520 67.3
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 2.2e-194 682.9 471 73.5
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 6.4e-194 681.4 587 62.4
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 8.4e-194 681.0 568 64.4
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.4e-193 680.2 599 60.6
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.3e-191 672.9 523 66.2
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 2.3e-191 672.9 566 65.5
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.3e-190 667.9 541 65.2
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 6.2e-189 664.8 554 63.9
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 2.6e-187 659.4 418 79.4
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.6e-187 657.9 619 59.1
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.2e-186 656.4 537 63.9
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 5.1e-183 645.2 422 77.0
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 1.1e-182 644.0 410 79.0
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.9e-178 629.4 496 65.5
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.9e-178 628.6 560 60.9
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 8.4e-178 627.9 515 64.7
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.6e-176 623.6 612 56.7
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 9.6e-174 614.4 409 77.3
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.3e-173 614.0 539 59.9
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.1e-164 584.3 459 68.6
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.1e-153 547.7 597 49.6
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 8.8e-143 511.5 477 55.1
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.3e-138 497.7 381 67.5
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 3.2e-137 493.0 532 52.6
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 8.0e-128 461.8 339 71.7
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.4e-126 456.4 324 73.8
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.3e-122 444.5 463 54.0
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 3.3e-97 360.1 239 74.5
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.3e-66 257.7 157 82.8
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 7.9e-59 232.6 145 80.0
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 1.9e-41 174.9 165 55.2
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 6.3e-40 169.9 165 53.3
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 1.8e-39 168.3 183 51.4
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 1.2e-38 165.6 183 50.8
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.2e-35 155.6 123 63.4
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 3.4e-30 137.5 97 70.1
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 8.8e-26 122.9 97 60.8
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.9e-22 110.2 95 55.8
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.6e-19 102.1 522 23.4
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 2.3e-18 98.2 115 49.6
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.2e-16 91.7 304 30.6
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.4e-15 89.0 60 73.3
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.1e-15 87.8 487 22.6
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.0e-13 82.8 217 30.4
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 2.9e-13 81.3 125 36.8
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 3.8e-13 80.9 103 49.5
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 3.2e-12 77.8 102 50.0
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.6e-11 75.5 70 64.3
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.7e-08 65.5 65 53.8
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.2e-08 65.1 55 54.5
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.9e-06 57.0 60 50.0


User provided reference genes

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