Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 4.9e-197 691.0 370 100.0
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 8.5e-133 477.6 376 68.6
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 4.8e-128 461.8 376 67.8
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.7e-112 410.2 373 62.2
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.0e-101 374.4 347 61.1
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 9.5e-92 341.3 376 51.6
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.6e-91 339.3 387 55.0
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 9.8e-89 331.3 376 54.5
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.9e-85 319.3 389 52.4
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.3e-84 316.2 326 56.7
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 1.0e-82 311.2 372 49.2
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.4e-82 310.8 378 49.7
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.8e-82 310.5 376 50.3
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 3.1e-82 309.7 385 48.6
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 6.8e-82 308.5 379 49.1
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 8.9e-82 308.1 387 47.3
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 1.2e-81 307.8 375 49.9
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 2.0e-81 307.0 370 46.8
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 7.5e-81 305.1 380 48.2
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 7.5e-81 305.1 379 48.5
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 9.8e-81 304.7 367 52.6
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 9.8e-81 304.7 350 50.6
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 9.8e-81 304.7 379 49.9
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.7e-80 303.9 382 48.2
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.7e-80 303.9 376 47.6
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.7e-80 303.9 376 50.3
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 4.9e-80 302.4 350 50.0
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.1e-79 301.2 356 49.7
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.9e-79 300.4 382 47.6
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 2.4e-79 300.1 380 47.1
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 5.4e-79 298.9 356 49.4
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 1.2e-78 297.7 376 49.7
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 1.2e-78 297.7 382 47.4
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.6e-78 297.4 387 48.6
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 7.8e-78 295.0 379 47.5
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.8e-78 295.0 350 50.6
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.3e-77 294.3 371 48.5
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.3e-77 294.3 371 48.5
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.3e-77 294.3 380 48.2
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.0e-77 293.1 350 50.3
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 3.0e-77 293.1 354 48.3
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 3.9e-77 292.7 375 47.7
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 6.6e-77 292.0 371 48.2
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.5e-76 290.0 351 49.9
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 4.3e-76 289.3 377 45.1
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 5.6e-76 288.9 377 46.4
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.2e-75 287.7 379 49.1
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 3.6e-75 286.2 353 48.7
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.8e-74 283.9 350 47.7
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 6.8e-74 282.0 355 48.5
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 1.5e-73 280.8 366 48.9
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 9.8e-73 278.1 374 45.7
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 9.8e-73 278.1 331 50.2
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 3.7e-72 276.2 324 51.9
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 8.3e-72 275.0 376 44.1
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 1.4e-71 274.2 378 46.3
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.9e-71 273.9 395 44.1
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 4.1e-71 272.7 329 48.9
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 5.4e-71 272.3 348 46.3
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 1.2e-70 271.2 368 44.0
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.2e-70 271.2 369 45.5
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 2.7e-70 270.0 378 45.8
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 3.5e-70 269.6 375 42.9
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.8e-70 268.5 350 46.6
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 7.8e-70 268.5 371 45.3
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 1.0e-69 268.1 375 42.4
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 1.7e-69 267.3 364 43.7
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-69 267.3 347 45.0
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.7e-69 267.3 347 45.0
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.3e-69 266.9 350 46.6
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 3.0e-69 266.5 347 44.7
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 3.0e-69 266.5 347 44.7
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 6.6e-69 265.4 370 44.3
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.6e-69 265.4 350 46.0
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.1e-68 264.6 365 43.8
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.5e-68 264.2 372 44.9
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 2.5e-68 263.5 365 44.7
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 3.3e-68 263.1 373 43.7
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 4.3e-68 262.7 385 43.9
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.3e-68 261.9 378 45.2
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 7.3e-68 261.9 366 44.8
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.2e-67 261.2 376 45.7
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 8.1e-67 258.5 362 43.9
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 8.1e-67 258.5 324 48.5
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.8e-66 257.3 376 44.4
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 2.3e-66 256.9 362 43.6
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 2.3e-66 256.9 380 42.6
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.0e-66 256.1 370 45.1
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 6.8e-66 255.4 363 44.4
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 6.8e-66 255.4 378 45.2
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 8.9e-66 255.0 386 42.2
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.5e-65 254.2 370 45.4
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 2.0e-65 253.8 345 42.9
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 2.0e-65 253.8 363 42.7
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 2.6e-65 253.4 384 40.9
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 4.4e-65 252.7 347 43.5
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.7e-64 250.8 362 42.5
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 2.2e-64 250.4 369 46.1
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 2.9e-64 250.0 364 42.9
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 3.7e-64 249.6 382 42.4
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 4.9e-64 249.2 347 44.4
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 6.4e-64 248.8 324 44.4
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 6.4e-64 248.8 308 48.1
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 4.1e-63 246.1 365 41.6
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 5.4e-63 245.7 362 42.3
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 5.4e-63 245.7 363 43.3
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.6e-62 244.2 371 41.0
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.6e-62 244.2 371 41.0
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 2.1e-62 243.8 368 41.0
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 6.0e-62 242.3 347 44.1
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 2.3e-61 240.4 368 40.8
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 2.3e-61 240.4 368 40.8
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 3.9e-61 239.6 336 42.6
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.5e-60 236.9 350 40.3
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 7.3e-60 235.3 329 48.3
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.2e-59 234.6 305 46.9
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 2.1e-59 233.8 404 39.6
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 6.2e-59 232.3 371 43.9
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.1e-58 229.9 345 41.2
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 4.0e-58 229.6 372 39.2
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 4.0e-58 229.6 360 41.7
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 1.7e-56 224.2 351 38.2
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 5.6e-52 209.1 346 38.2
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 7.3e-52 208.8 327 38.8
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 7.6e-49 198.7 281 40.6
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.4e-47 194.5 286 45.1
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.1e-46 190.7 383 32.9
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.0e-45 188.3 275 40.7
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 5.6e-44 182.6 333 39.0
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 2.4e-34 150.6 190 45.3
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 8.7e-29 132.1 131 59.5
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 4.2e-23 113.2 224 36.2
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 7.2e-23 112.5 131 51.9
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.6e-22 109.8 146 40.4
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 6.1e-22 109.4 379 27.7
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.8e-21 107.8 354 29.9
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 3.9e-21 106.7 339 30.1
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.1e-20 105.1 137 41.6
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 5.7e-20 102.8 159 38.4
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 8.2e-19 99.0 102 49.0
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.4e-18 98.2 244 30.7
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.3e-18 96.3 119 42.9
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.5e-17 94.7 100 49.0
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.0e-16 92.0 354 26.3
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.2e-16 90.9 376 26.1
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 6.5e-16 89.4 134 37.3
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 5.7e-12 76.3 148 34.5
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.2e-08 64.3 76 47.4
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.2e-08 64.3 76 47.4
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 3.8e-08 63.5 68 55.9
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 3.8e-08 63.5 68 54.4
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 3.8e-08 63.5 71 42.3
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 1.9e-07 61.2 68 52.9
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 2.5e-07 60.8 60 56.7
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 7.2e-07 59.3 56 57.1
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 1.6e-06 58.2 60 53.3
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 2.1e-06 57.8 82 45.1
Oeu051052.1 Olea europaea HOM05D002428 ORTHO05D005085 7.9e-06 55.8 68 51.5


User provided reference genes

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