Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 2.8e-288 994.6 498 100.0
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 6.3e-224 780.8 500 78.6
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 1.7e-221 772.7 499 77.4
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 2.2e-216 755.7 499 76.4
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 2.4e-215 752.3 501 76.0
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 8.3e-200 700.7 566 65.2
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.6e-198 696.4 513 69.4
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 2.9e-197 692.2 511 67.7
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 7.2e-196 687.6 513 68.0
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 4.0e-194 681.8 513 66.9
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 2.6e-193 679.1 511 67.9
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.3e-192 676.8 514 66.7
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 3.7e-192 675.2 514 66.5
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.8e-191 672.9 511 68.1
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 2.4e-191 672.5 507 67.9
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 2.4e-191 672.5 516 67.6
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 9.2e-191 670.6 511 67.1
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 1.2e-190 670.2 512 66.8
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 2.7e-190 669.1 536 63.6
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 2.7e-190 669.1 517 67.3
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.0e-189 667.2 508 66.9
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.3e-189 666.8 508 66.9
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 6.6e-189 664.5 501 67.9
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.1e-188 663.7 511 67.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 2.5e-188 662.5 511 67.1
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.1e-187 659.4 517 65.2
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 2.8e-187 659.1 511 67.3
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 3.6e-187 658.7 513 66.1
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 4.7e-187 658.3 511 65.9
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 6.2e-187 657.9 512 65.6
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 8.0e-187 657.5 510 66.5
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 8.0e-187 657.5 508 65.9
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.4e-186 656.8 512 65.8
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.4e-186 656.8 572 60.5
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.8e-186 656.4 514 66.0
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.8e-186 656.4 511 67.5
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.3e-186 656.0 511 66.3
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 2.3e-186 656.0 510 66.5
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 5.2e-186 654.8 513 65.3
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 5.2e-186 654.8 510 65.7
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 6.8e-186 654.4 513 65.3
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.8e-186 654.4 512 65.8
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 6.8e-186 654.4 511 65.2
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 2.6e-185 652.5 512 66.2
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.7e-184 649.8 511 66.1
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 2.2e-184 649.4 508 64.6
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 1.1e-183 647.1 510 64.7
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.4e-183 646.0 520 64.6
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 3.2e-183 645.6 512 64.6
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 7.0e-183 644.4 510 64.9
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 2.0e-182 642.9 507 65.7
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 3.5e-182 642.1 515 63.5
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 4.6e-182 641.7 510 64.5
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 6.0e-182 641.3 514 63.6
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 7.8e-182 641.0 510 64.5
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.3e-181 640.2 528 63.4
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 2.3e-181 639.4 514 64.0
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 2.3e-181 639.4 512 64.1
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 6.6e-181 637.9 597 58.3
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 6.6e-181 637.9 478 67.2
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 8.6e-181 637.5 508 64.4
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.9e-180 636.3 510 63.3
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 9.5e-180 634.0 511 64.4
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 1.6e-179 633.3 510 62.9
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.6e-179 633.3 510 62.9
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.6e-179 633.3 512 64.6
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.8e-179 632.5 516 62.8
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.1e-178 630.6 510 63.3
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.8e-178 629.8 509 62.7
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 1.8e-178 629.8 511 63.4
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 3.1e-178 629.0 495 63.6
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 5.2e-178 628.2 510 62.7
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.2e-178 628.2 502 64.5
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.2e-178 628.2 502 64.5
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 3.4e-177 625.5 509 62.5
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 3.4e-177 625.5 460 68.0
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 7.5e-177 624.4 509 62.5
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 7.5e-177 624.4 504 63.3
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.9e-176 622.5 514 63.4
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 2.9e-176 622.5 521 62.6
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.9e-175 619.8 513 62.4
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 4.1e-175 618.6 517 61.3
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 2.1e-174 616.3 494 63.6
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 2.7e-174 615.9 496 64.1
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 3.5e-174 615.5 502 62.5
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 7.8e-174 614.4 439 70.4
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 6.6e-173 611.3 549 59.9
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 1.9e-172 609.8 480 64.6
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 6.2e-171 604.7 509 62.7
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 6.8e-170 601.3 433 70.2
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.5e-169 600.1 509 62.1
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 3.4e-169 599.0 501 62.5
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 6.4e-168 594.7 498 62.2
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 1.9e-167 593.2 499 63.1
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.2e-166 590.5 501 61.5
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 2.7e-166 589.3 434 68.2
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 2.8e-163 579.3 557 56.6
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 2.6e-161 572.8 462 62.3
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.4e-159 567.0 468 62.2
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.9e-159 566.6 489 61.6
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.4e-154 550.4 423 65.2
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 6.6e-149 531.6 424 64.6
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 2.8e-147 526.2 461 58.4
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.7e-142 509.6 371 69.8
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 6.0e-142 508.4 472 54.2
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.5e-140 503.8 415 63.9
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.3e-139 500.7 357 71.1
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 2.0e-137 493.4 497 53.7
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 5.8e-137 491.9 380 66.8
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-131 474.2 438 58.0
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 7.7e-121 438.3 386 60.6
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 8.2e-115 418.3 445 50.6
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.4e-114 417.5 499 44.9
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.8e-109 400.6 437 48.1
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.7e-107 394.0 362 58.6
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 7.0e-106 388.7 391 56.5
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.7e-99 367.5 507 43.8
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.6e-94 349.7 278 64.4
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 4.7e-94 349.4 327 58.7
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.0e-77 295.0 683 34.8
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 3.4e-76 290.0 501 36.9
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 1.8e-69 267.7 462 35.1
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 2.0e-65 254.2 504 36.5
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 4.3e-63 246.5 239 55.6
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 2.1e-54 217.6 208 54.8
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 1.8e-53 214.5 361 35.2
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-51 208.4 157 68.2
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 9.6e-47 192.2 455 30.3
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 8.7e-40 169.1 207 42.5
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 9.0e-37 159.1 102 73.5
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 1.4e-34 151.8 243 39.5
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-32 145.2 92 77.2
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 1.8e-29 134.8 132 55.3
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.3e-24 118.6 333 26.7
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.0e-24 117.5 106 57.5
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.5e-15 87.8 65 66.2
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 5.9e-12 76.6 46 69.6
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 2.2e-11 74.7 118 45.8
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 9.3e-10 69.3 66 62.1
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 1.3e-06 58.9 432 22.2


User provided reference genes

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