Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 5.0e-152 541.2 295 100.0
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 4.5e-113 411.8 302 77.5
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.5e-111 406.0 297 76.8
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.4e-106 390.2 332 69.0
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 3.3e-103 379.0 299 74.9
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 1.2e-102 377.1 297 71.4
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 3.6e-102 375.6 297 71.0
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 1.4e-101 373.6 386 59.1
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 6.8e-101 371.3 297 73.4
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 4.4e-100 368.6 297 70.0
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 7.5e-100 367.9 297 69.7
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 1.9e-98 363.2 298 68.8
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 4.1e-98 362.1 298 68.5
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 7.0e-98 361.3 297 67.0
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.6e-97 360.1 297 66.3
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 4.6e-97 358.6 298 69.5
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 6.0e-97 358.2 297 71.7
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 7.8e-97 357.8 298 67.8
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.7e-96 356.7 298 70.1
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 3.9e-96 355.5 304 66.8
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 3.9e-96 355.5 301 71.8
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 5.1e-96 355.1 298 70.5
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 1.1e-95 354.0 297 68.0
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.9e-95 353.2 298 70.1
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 2.5e-95 352.8 297 68.4
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 3.3e-95 352.4 284 70.8
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 2.8e-94 349.4 297 67.7
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 3.1e-93 345.9 298 66.4
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 5.2e-93 345.1 390 57.9
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 6.8e-93 344.7 284 69.0
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 6.8e-93 344.7 299 67.2
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 8.9e-93 344.4 296 66.2
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 8.9e-93 344.4 296 66.6
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 8.9e-93 344.4 294 67.7
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 2.0e-92 343.2 299 69.2
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.6e-92 342.8 296 65.9
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 7.5e-92 341.3 296 65.5
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 7.5e-92 341.3 297 65.7
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 9.9e-92 340.9 298 66.1
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 2.2e-91 339.7 296 65.2
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 2.9e-91 339.3 298 64.8
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 3.7e-91 339.0 298 66.1
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 6.4e-91 338.2 294 67.0
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.1e-90 337.4 296 64.5
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 1.1e-90 337.4 297 65.3
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 2.4e-90 336.3 299 65.6
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 5.4e-90 335.1 360 58.3
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 5.4e-90 335.1 297 65.0
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 1.2e-89 334.0 299 63.2
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 2.7e-89 332.8 297 64.0
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 4.6e-89 332.0 297 65.0
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 6.0e-89 331.6 261 70.5
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 6.0e-89 331.6 302 64.2
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 6.0e-89 331.6 261 69.7
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 7.8e-89 331.3 297 65.0
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 1.0e-88 330.9 299 62.9
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 6.6e-88 328.2 266 68.0
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 8.6e-88 327.8 315 62.2
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 1.5e-87 327.0 301 63.1
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 1.9e-87 326.6 298 62.1
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 1.9e-87 326.6 299 63.2
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 3.3e-87 325.9 296 63.9
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 3.3e-87 325.9 297 65.7
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 3.3e-87 325.9 305 63.9
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 3.3e-87 325.9 259 71.0
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 9.5e-87 324.3 221 81.9
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 1.2e-86 323.9 305 64.6
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 1.2e-86 323.9 299 62.9
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 2.1e-86 323.2 301 62.1
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 1.8e-85 320.1 296 62.2
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 2.4e-85 319.7 301 62.8
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 3.1e-85 319.3 305 61.6
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 4.0e-85 318.9 296 62.2
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 5.2e-85 318.5 301 62.5
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 5.2e-85 318.5 305 61.6
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 5.2e-85 318.5 301 62.5
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 1.2e-84 317.4 326 58.6
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 5.8e-84 315.1 295 61.7
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 3.8e-83 312.4 320 60.6
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 4.9e-83 312.0 301 60.8
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 4.9e-83 312.0 301 60.8
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 6.4e-83 311.6 297 60.6
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.9e-82 310.1 300 61.0
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.4e-82 309.7 255 67.1
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 6.0e-81 305.1 297 63.0
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 7.8e-81 304.7 313 59.7
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 5.1e-80 302.0 309 58.9
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 1.5e-79 300.4 263 63.9
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 4.3e-79 298.9 295 60.0
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 2.8e-78 296.2 297 60.3
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 2.8e-78 296.2 295 60.7
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 8.1e-78 294.7 254 65.0
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.1e-77 294.3 298 61.4
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 1.8e-77 293.5 298 59.1
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 6.9e-77 291.6 306 59.2
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 9.0e-77 291.2 376 51.1
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.2e-76 290.8 298 58.4
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 4.4e-76 288.9 296 58.8
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 4.4e-76 288.9 296 59.1
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 9.9e-76 287.7 216 72.2
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 4.9e-75 285.4 263 62.4
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 1.4e-74 283.9 290 59.7
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 1.6e-73 280.4 266 60.2
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 7.6e-68 261.5 182 81.3
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 7.6e-68 261.5 199 76.9
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.4e-66 257.3 281 58.0
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 1.4e-66 257.3 242 63.6
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 1.3e-64 250.8 178 79.8
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.1e-63 247.7 262 54.6
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 4.0e-61 239.2 303 52.1
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 5.8e-60 235.3 234 61.5
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 9.3e-58 228.0 186 72.6
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 2.5e-55 219.9 309 52.8
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 2.4e-53 213.4 181 69.6
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.1e-49 200.3 149 77.2
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 2.3e-48 196.8 247 48.6
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 9.7e-47 191.4 249 46.2
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 1.3e-46 191.0 249 46.2
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 6.3e-46 188.7 283 44.5
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 3.8e-43 179.5 224 46.0
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 1.4e-37 161.0 145 64.1
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.4e-37 161.0 241 39.8
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 8.5e-35 151.8 166 54.8
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 4.2e-34 149.4 191 48.2
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 9.4e-34 148.3 130 63.8
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 3.6e-33 146.4 119 68.1
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 6.7e-32 142.1 178 51.7
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 1.8e-29 134.0 118 63.6
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 3.5e-28 129.8 233 37.3
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 8.5e-27 125.2 79 88.6
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 9.7e-23 111.7 177 42.9
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 3.1e-21 106.7 122 50.0
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.5e-18 97.8 98 59.2
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 2.7e-17 93.6 109 49.5
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 6.1e-17 92.4 109 48.6
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 4.0e-16 89.7 109 48.6
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 1.0e-11 75.1 63 58.7
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 1.6e-09 67.8 222 26.6
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 2.6e-07 60.5 187 31.0
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 3.4e-07 60.1 57 52.6
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 4.4e-07 59.7 50 56.0
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 4.4e-07 59.7 50 56.0
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 4.4e-07 59.7 50 56.0
unitig_748.g8292 Utricularia gibba HOM05D005102 ORTHO05D006090 5.7e-07 59.3 60 56.7


User provided reference genes

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