Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 0.0e+00 1085.9 552 100.0
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 2.6e-255 885.2 552 80.4
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 7.6e-255 883.6 552 80.1
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.0e-254 883.2 552 80.3
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 2.9e-254 881.7 552 80.3
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.9e-253 879.0 552 79.2
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 1.2e-252 876.3 575 77.7
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 2.1e-252 875.5 552 78.6
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 1.3e-251 872.8 556 80.8
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 1.5e-250 869.4 568 76.8
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 1.9e-250 869.0 527 82.0
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 3.3e-250 868.2 552 79.9
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 5.7e-250 867.5 571 77.9
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 7.4e-250 867.1 552 79.2
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.6e-249 865.9 552 78.4
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 6.3e-249 864.0 552 77.5
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 1.1e-248 863.2 600 74.5
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 2.0e-247 859.0 552 78.6
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 3.4e-247 858.2 553 77.4
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 4.5e-247 857.8 552 77.5
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 1.3e-246 856.3 597 74.4
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 1.3e-246 856.3 549 78.9
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 2.2e-246 855.5 558 78.0
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 5.0e-246 854.4 552 77.0
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 6.5e-246 854.0 549 78.0
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 6.5e-246 854.0 551 78.0
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 8.5e-246 853.6 552 77.4
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 1.1e-245 853.2 579 75.8
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 2.5e-245 852.0 568 76.1
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 3.2e-245 851.7 552 77.4
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 3.0e-243 845.1 558 76.2
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 2.0e-242 842.4 561 75.6
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 2.0e-242 842.4 567 76.0
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.0e-242 842.4 556 77.0
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.5e-242 842.0 557 75.9
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 3.3e-242 841.6 552 75.4
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.7e-241 839.3 549 76.5
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 2.2e-241 839.0 552 75.5
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 8.2e-241 837.0 552 76.1
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.8e-240 835.9 552 75.4
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 6.9e-240 833.9 552 75.2
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 6.9e-240 833.9 553 76.3
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 9.1e-240 833.6 577 73.8
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 7.7e-239 830.5 578 72.8
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 1.0e-238 830.1 550 75.5
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.7e-238 829.3 590 73.6
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 2.2e-238 828.9 552 75.5
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 1.1e-237 826.6 550 75.1
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 1.1e-237 826.6 549 74.9
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 1.4e-237 826.2 555 74.1
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 5.5e-237 824.3 556 75.0
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 9.4e-237 823.5 556 75.7
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 6.1e-236 820.8 550 74.2
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 2.3e-235 818.9 550 74.5
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 2.3e-235 818.9 493 81.9
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 5.1e-235 817.8 533 76.2
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 6.7e-235 817.4 550 74.2
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.5e-234 816.2 547 75.7
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 5.7e-234 814.3 549 73.6
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 2.2e-233 812.4 550 77.8
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 4.8e-233 811.2 549 72.7
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 3.1e-232 808.5 597 70.0
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.5e-231 806.2 482 81.3
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 5.0e-230 801.2 551 74.6
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 2.5e-229 798.9 555 72.1
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 3.6e-228 795.0 553 72.5
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 1.8e-227 792.7 559 71.7
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 2.3e-227 792.3 552 72.3
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 3.0e-227 792.0 578 71.3
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 6.7e-227 790.8 666 64.1
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 1.5e-226 789.6 462 83.3
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 8.2e-225 783.9 533 73.9
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 8.2e-225 783.9 558 71.1
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 1.1e-224 783.5 525 74.9
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 4.1e-224 781.6 564 70.4
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 5.3e-224 781.2 551 70.8
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 5.5e-221 771.2 566 71.7
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 5.5e-221 771.2 541 73.9
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 2.8e-217 758.8 610 66.1
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 7.0e-216 754.2 493 78.1
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 1.1e-213 746.9 513 74.9
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 1.5e-213 746.5 598 65.2
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 5.5e-213 744.6 590 67.8
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 1.2e-210 736.9 552 69.2
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 7.5e-210 734.2 486 77.4
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.8e-209 732.3 530 71.3
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 6.3e-209 731.1 443 80.4
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 4.1e-208 728.4 489 74.6
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 2.6e-202 709.1 513 67.4
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 4.4e-202 708.4 488 75.6
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 7.0e-200 701.0 495 71.1
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 1.6e-199 699.9 578 66.6
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.3e-198 696.0 509 66.6
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 4.7e-196 688.3 440 76.1
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 1.3e-193 680.2 559 65.3
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 7.5e-186 654.4 522 61.1
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 4.1e-184 648.7 476 68.3
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 7.8e-183 644.4 493 64.9
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 1.7e-182 643.3 516 67.4
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.8e-179 633.3 508 62.6
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 1.2e-175 620.5 423 71.6
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 4.6e-175 618.6 472 69.7
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 5.6e-165 585.1 552 58.7
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 6.2e-164 581.6 455 67.9
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 9.0e-163 577.8 343 84.8
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 3.1e-155 552.7 372 78.2
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 4.5e-154 548.9 486 57.0
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 2.2e-153 546.6 490 56.5
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 3.2e-144 516.2 322 80.7
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 1.1e-139 501.1 320 77.8
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 3.2e-136 489.6 293 84.3
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.9e-134 482.6 481 48.6
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 6.7e-118 428.7 271 81.9
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.1e-115 421.4 443 53.7
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 6.5e-105 385.6 259 74.1
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 7.5e-101 372.1 402 54.7
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 9.5e-96 355.1 228 78.5
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 3.4e-93 346.7 210 84.3
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 2.6e-85 320.5 212 73.1
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 3.9e-81 306.6 183 84.7
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 1.9e-80 304.3 212 70.3
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 7.3e-80 302.4 212 69.3
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 8.3e-76 288.9 211 68.2
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 1.6e-74 284.6 471 37.8
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.1e-62 243.8 146 75.3
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 1.5e-56 224.9 139 79.1
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 4.4e-53 213.4 253 50.2
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 1.2e-50 205.3 216 50.0
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 3.3e-48 197.2 416 32.9
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 4.8e-39 166.8 356 33.7
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 3.1e-38 164.1 89 82.0
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 3.1e-38 164.1 89 82.0
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.4e-35 155.2 136 57.4
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 9.3e-35 152.5 146 56.8
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 1.5e-32 145.2 123 63.4
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 5.6e-32 143.3 114 69.3
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.3e-25 121.3 81 71.6
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 2.5e-24 117.9 151 49.7
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 9.0e-22 109.4 66 80.3
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.2e-21 109.0 64 82.8
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 1.7e-20 105.1 122 49.2
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 6.5e-20 103.2 68 73.5
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 1.9e-19 101.7 52 90.4
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 2.5e-19 101.3 119 46.2
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 4.2e-19 100.5 141 44.0
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 3.0e-17 94.4 57 77.2
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 8.7e-17 92.8 84 56.0
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 7.4e-16 89.7 106 50.9
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 2.0e-13 81.6 58 72.4
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.6e-10 72.0 90 50.0
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 6.1e-10 70.1 61 60.7
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 3.9e-09 67.4 47 70.2
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 5.1e-09 67.0 55 60.0
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 2.2e-07 61.6 43 67.4
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 2.2e-07 61.6 72 47.2
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 1.8e-06 58.5 38 71.1
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 6.9e-06 56.6 51 54.9


User provided reference genes

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