Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 2.4e-57 225.3 115 100.0
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.0e-44 183.3 117 82.1
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 6.6e-44 180.6 115 80.9
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.5e-43 178.7 118 78.0
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.3e-43 178.3 117 76.1
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 5.6e-43 177.6 120 73.3
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 5.6e-43 177.6 120 74.2
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 5.6e-43 177.6 120 75.0
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 9.6e-43 176.8 118 76.3
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 9.6e-43 176.8 115 78.3
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 9.6e-43 176.8 120 73.3
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 1.3e-42 176.4 116 80.2
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 1.3e-42 176.4 116 79.3
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 1.6e-42 176.0 118 76.3
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 2.1e-42 175.6 121 73.6
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 2.1e-42 175.6 121 73.6
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 2.8e-42 175.3 121 73.6
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 2.8e-42 175.3 121 73.6
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 2.8e-42 175.3 116 77.6
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 2.8e-42 175.3 117 76.9
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 3.6e-42 174.9 114 78.1
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 4.8e-42 174.5 119 78.2
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 6.2e-42 174.1 117 75.2
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 6.2e-42 174.1 115 77.4
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 6.2e-42 174.1 116 76.7
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 8.1e-42 173.7 116 78.4
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 8.1e-42 173.7 117 79.5
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 8.1e-42 173.7 120 72.5
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 8.1e-42 173.7 121 75.2
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.1e-41 173.3 115 74.8
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.1e-41 173.3 116 79.3
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 1.1e-41 173.3 115 78.3
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.1e-41 173.3 115 79.1
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 1.4e-41 172.9 120 72.5
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 1.4e-41 172.9 120 72.5
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 1.4e-41 172.9 120 72.5
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.4e-41 172.9 116 79.3
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.8e-41 172.6 117 77.8
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 1.8e-41 172.6 113 78.8
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.8e-41 172.6 116 76.7
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.8e-41 172.6 115 77.4
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.4e-41 172.2 115 76.5
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.4e-41 172.2 115 75.7
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.4e-41 172.2 115 75.7
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 2.4e-41 172.2 116 77.6
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 3.1e-41 171.8 115 77.4
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 3.1e-41 171.8 115 75.7
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 3.1e-41 171.8 116 77.6
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 4.0e-41 171.4 115 77.4
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 4.0e-41 171.4 114 76.3
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 5.3e-41 171.0 114 75.4
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 5.3e-41 171.0 114 75.4
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 6.9e-41 170.6 120 72.5
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 6.9e-41 170.6 113 77.9
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 6.9e-41 170.6 113 77.9
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 9.0e-41 170.2 119 73.9
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 9.0e-41 170.2 113 77.0
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 9.0e-41 170.2 113 77.0
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 9.0e-41 170.2 113 76.1
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 9.0e-41 170.2 113 76.1
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 1.2e-40 169.9 114 76.3
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.5e-40 169.5 118 78.0
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.0e-40 169.1 118 73.7
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.6e-40 168.7 113 77.0
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 4.5e-40 167.9 114 73.7
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 4.5e-40 167.9 116 79.3
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 5.8e-40 167.5 120 74.2
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 5.8e-40 167.5 116 74.1
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 7.6e-40 167.2 115 74.8
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 7.6e-40 167.2 115 76.5
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 9.9e-40 166.8 116 75.0
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 1.3e-39 166.4 112 72.3
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 2.2e-39 165.6 115 73.0
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 2.2e-39 165.6 114 74.6
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 6.4e-39 164.1 119 71.4
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 8.4e-39 163.7 114 72.8
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.1e-38 163.3 114 72.8
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-38 163.3 121 74.4
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.1e-38 163.3 121 74.4
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.1e-38 163.3 116 72.4
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.4e-38 162.9 114 72.8
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.2e-38 161.8 121 73.6
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 3.2e-38 161.8 113 74.3
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 3.2e-38 161.8 117 72.6
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 4.2e-38 161.4 119 72.3
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 5.5e-38 161.0 115 73.9
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 5.5e-38 161.0 116 71.6
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 5.5e-38 161.0 110 78.2
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 7.1e-38 160.6 118 70.3
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 9.3e-38 160.2 111 73.9
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 9.3e-38 160.2 110 77.3
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 9.3e-38 160.2 124 69.4
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 1.2e-37 159.8 109 81.7
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.2e-37 159.8 110 80.0
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.6e-37 159.5 125 68.8
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.6e-37 159.5 114 71.9
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.6e-37 159.5 110 76.4
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.6e-37 159.5 103 81.6
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.7e-37 158.7 113 75.2
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.7e-37 158.7 103 78.6
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 3.5e-37 158.3 119 71.4
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 3.5e-37 158.3 117 72.6
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 4.6e-37 157.9 118 72.0
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 7.9e-37 157.1 115 73.0
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 7.9e-37 157.1 124 67.7
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 7.9e-37 157.1 101 79.2
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 7.9e-37 157.1 113 71.7
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 1.0e-36 156.8 116 70.7
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.3e-36 156.4 110 70.0
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.3e-36 156.4 110 72.7
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 1.8e-36 156.0 110 76.4
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 3.9e-36 154.8 110 73.6
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.7e-36 154.1 110 69.1
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 6.7e-36 154.1 110 72.7
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 1.1e-35 153.3 102 78.4
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.1e-35 153.3 127 66.9
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.5e-35 152.9 110 72.7
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.9e-35 152.5 119 70.6
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.3e-35 151.4 119 71.4
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.3e-35 151.4 119 71.4
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 5.6e-35 151.0 102 78.4
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.3e-34 149.8 84 85.7
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 1.3e-34 149.8 114 68.4
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.1e-34 149.1 84 85.7
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.7e-34 148.3 124 66.9
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 4.8e-34 147.9 120 69.2
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 4.0e-33 144.8 112 68.8
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 4.0e-33 144.8 116 68.1
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 6.9e-33 144.1 125 65.6
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.7e-31 139.4 110 68.2
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 2.9e-31 138.7 100 73.0
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 7.1e-30 134.0 117 69.2
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 9.3e-30 133.7 116 63.8
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.2e-29 133.3 75 88.0
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.7e-29 132.1 110 65.5
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 4.6e-29 131.3 87 77.0
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 3.0e-28 128.6 114 61.4
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 8.2e-26 120.6 112 58.0
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 6.9e-25 117.5 69 85.5
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 2.0e-24 115.9 118 58.5
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.2e-23 112.5 79 72.2
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 8.4e-23 110.5 98 64.3
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.2e-22 108.2 78 69.2
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.3e-20 103.2 76 69.7
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 1.9e-19 99.4 55 85.5
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 1.3e-18 96.7 88 61.4
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 3.7e-18 95.1 91 56.0
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.2e-16 90.1 71 67.6
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.0e-16 89.4 46 95.7
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 4.5e-16 88.2 67 67.2
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.9e-16 87.8 77 58.4
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 7.7e-16 87.4 81 63.0
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.0e-15 87.0 118 47.5
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.5e-11 73.2 68 55.9


User provided reference genes

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