Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.7e-51 205.7 101 100.0
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.0e-48 194.9 101 96.0
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 6.7e-32 140.6 107 67.3
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 5.7e-31 137.5 111 65.8
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.8e-30 135.2 111 64.9
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.8e-29 132.5 98 72.4
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.4e-29 132.1 98 72.4
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 9.0e-29 130.2 108 66.7
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 2.9e-27 125.2 99 64.6
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 6.5e-27 124.0 111 57.7
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 7.2e-26 120.6 120 51.7
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 4.6e-25 117.9 106 54.7
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 4.6e-25 117.9 105 58.1
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 4.6e-25 117.9 108 57.4
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 3.9e-24 114.8 105 54.3
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 3.9e-24 114.8 105 54.3
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 1.5e-23 112.8 105 56.2
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.8e-21 105.9 102 56.9
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 2.4e-21 105.5 105 57.1
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 5.3e-21 104.4 103 54.4
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 9.1e-21 103.6 102 54.9
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 4.5e-20 101.3 104 54.8
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.2e-19 99.0 97 50.5
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 2.9e-19 98.6 104 50.0
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.8e-19 98.2 106 52.8
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 6.5e-19 97.4 86 58.1
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 6.5e-19 97.4 101 54.5
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 8.5e-19 97.1 93 55.9
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.4e-18 96.3 99 49.5
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.9e-18 95.9 93 57.0
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 3.2e-18 95.1 86 59.3
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 4.2e-18 94.7 83 60.2
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 4.2e-18 94.7 103 53.4
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.5e-18 94.4 118 52.5
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 7.2e-18 94.0 118 52.5
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 7.2e-18 94.0 118 52.5
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 7.2e-18 94.0 82 56.1
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 9.4e-18 93.6 115 53.9
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.2e-17 93.2 102 54.9
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.2e-17 93.2 104 49.0
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.6e-17 92.8 98 56.1
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.6e-17 92.8 110 51.8
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.6e-17 92.8 110 51.8
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 2.1e-17 92.4 89 55.1
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 2.1e-17 92.4 78 57.7
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.1e-17 92.4 83 61.4
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.1e-17 92.4 84 60.7
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 2.7e-17 92.0 104 50.0
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.7e-17 92.0 105 53.3
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 3.6e-17 91.7 103 50.5
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 3.6e-17 91.7 93 53.8
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.7e-17 91.3 118 51.7
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 7.9e-17 90.5 83 57.8
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 7.9e-17 90.5 98 53.1
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 7.9e-17 90.5 117 50.4
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 7.9e-17 90.5 97 53.6
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 1.0e-16 90.1 94 55.3
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 1.0e-16 90.1 95 53.7
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 2.3e-16 89.0 94 58.5
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.0e-16 88.6 85 54.1
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 3.0e-16 88.6 85 54.1
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 3.9e-16 88.2 109 45.9
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 3.9e-16 88.2 94 55.3
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 5.1e-16 87.8 103 46.6
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 5.1e-16 87.8 93 55.9
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 5.1e-16 87.8 106 43.4
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 6.7e-16 87.4 99 51.5
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.7e-16 87.4 93 51.6
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.7e-16 87.4 93 51.6
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 8.8e-16 87.0 94 55.3
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 8.8e-16 87.0 89 51.7
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.1e-15 86.7 87 55.2
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.1e-15 86.7 89 59.6
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.1e-15 86.7 103 50.5
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.1e-15 86.7 92 53.3
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.5e-15 86.3 89 53.9
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.6e-15 85.5 95 50.5
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 2.6e-15 85.5 78 52.6
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.3e-15 85.1 95 50.5
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 3.3e-15 85.1 92 50.0
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.3e-15 85.1 89 55.1
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 4.4e-15 84.7 99 50.5
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.7e-15 84.3 100 50.0
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 5.7e-15 84.3 94 53.2
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.4e-15 84.0 90 51.1
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.7e-14 82.8 90 50.0
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.7e-14 82.8 107 46.7
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.2e-14 82.4 100 51.0
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.8e-14 82.0 85 52.9
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.8e-14 82.0 88 51.1
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.7e-14 81.6 91 52.7
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.3e-14 80.9 83 51.8
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 8.2e-14 80.5 107 48.6
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 8.2e-14 80.5 102 45.1
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 8.2e-14 80.5 91 51.6
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-13 80.1 93 49.5
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.8e-13 79.3 102 44.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.8e-13 79.3 89 52.8
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.4e-13 79.0 102 44.1
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.1e-13 78.6 98 48.0
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 3.1e-13 78.6 110 48.2
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.1e-13 78.6 89 53.9
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.3e-13 77.8 86 50.0
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 7.0e-13 77.4 88 51.1
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 9.1e-13 77.0 93 51.6
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 9.1e-13 77.0 102 43.1
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 9.1e-13 77.0 102 43.1
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 9.1e-13 77.0 102 43.1
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-12 76.6 96 47.9
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.2e-12 76.6 107 44.9
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.2e-12 76.6 126 41.3
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.2e-12 76.6 126 41.3
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-12 76.3 86 52.3
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.6e-12 76.3 95 51.6
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.0e-12 75.9 85 51.8
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.6e-12 75.5 87 50.6
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 3.5e-12 75.1 93 47.3
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 3.5e-12 75.1 95 50.5
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.5e-12 75.1 88 53.4
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.5e-12 74.7 86 51.2
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 5.9e-12 74.3 96 50.0
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 7.7e-12 73.9 95 50.5
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.0e-11 73.6 92 51.1
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.0e-11 73.6 84 51.2
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.0e-11 73.6 84 50.0
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.3e-11 73.2 102 44.1
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.7e-11 72.8 94 47.9
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.7e-11 72.8 86 51.2
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.2e-11 72.4 91 50.5
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 2.2e-11 72.4 85 45.9
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 3.8e-11 71.6 90 44.4
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 5.0e-11 71.2 84 47.6
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 5.0e-11 71.2 100 42.0
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 5.0e-11 71.2 86 48.8
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 8.5e-11 70.5 96 44.8
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 8.5e-11 70.5 96 44.8
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 8.5e-11 70.5 92 53.3
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 8.5e-11 70.5 87 44.8
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 1.1e-10 70.1 94 42.6
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.1e-10 70.1 85 51.8
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.9e-10 69.3 84 46.4
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.9e-10 69.3 106 44.3
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 2.5e-10 68.9 92 44.6
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.5e-10 68.9 92 43.5
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.2e-10 68.6 93 46.2
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 4.2e-10 68.2 101 44.6
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 4.2e-10 68.2 118 41.5
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.2e-10 68.2 86 50.0
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 7.2e-10 67.4 99 41.4
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 9.4e-10 67.0 96 45.8
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 9.4e-10 67.0 103 43.7
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.2e-09 66.6 87 47.1
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 1.2e-09 66.6 79 51.9
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 1.6e-09 66.2 107 44.9
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 2.1e-09 65.9 86 45.3
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.7e-09 65.5 85 45.9
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.7e-09 65.5 123 38.2
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 6.1e-09 64.3 85 44.7
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 8.0e-09 63.9 85 45.9
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.0e-08 63.5 85 44.7
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 1.0e-08 63.5 85 45.9
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.4e-08 63.2 73 50.7
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.4e-08 63.2 73 50.7
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 3.0e-08 62.0 83 45.8
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 3.0e-08 62.0 83 45.8
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 3.0e-08 62.0 99 45.5
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 8.8e-08 60.5 103 37.9
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 8.8e-08 60.5 85 42.4
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 8.8e-08 60.5 85 42.4
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 1.1e-07 60.1 79 43.0
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.5e-07 59.7 85 42.4
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 1.5e-07 59.7 85 47.1
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 2.0e-07 59.3 85 42.4
PGSC0003DMG400013448 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.6e-07 58.9 57 57.9
unitig_33.g30216 Utricularia gibba HOM05D003940 ORTHO05D004461 3.7e-06 55.1 45 57.8


User provided reference genes

Program Settings