Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00206 Erythranthe guttata HOM05D006883 ORTHO05D008624 1.1e-237 826.2 417 100.0
MSTRG.10057 Avicennia marina HOM05D006883 ORTHO05D008624 9.4e-189 663.7 421 79.6
SalBow2G1088 Salvia bowleyana HOM05D006883 ORTHO05D008624 2.1e-188 662.5 421 79.1
Nitab4.5_0000829g0010 Nicotiana tabacum HOM05D006883 ORTHO05D008624 4.2e-181 638.3 421 77.2
Lj6P670T41 Lonicera japonica HOM05D006883 ORTHO05D008624 8.8e-179 630.6 412 77.4
Nitab4.5_0002986g0100 Nicotiana tabacum HOM05D006883 ORTHO05D008624 2.0e-178 629.4 421 76.2
CAN.G556.8 Capsicum annuum HOM05D006883 ORTHO05D008624 9.7e-178 627.1 414 76.6
Sopen01g029090 Solanum pennellii HOM05D006883 ORTHO05D008624 4.8e-177 624.8 422 75.8
PGSC0003DMG400022678 Solanum tuberosum HOM05D006883 ORTHO05D008624 3.5e-175 618.6 422 75.1
Actinidia40226 Actinidia chinensis HOM05D006883 ORTHO05D008624 7.7e-175 617.5 422 73.7
Manes.15G016500 Manihot esculenta HOM05D006883 ORTHO05D008624 1.0e-174 617.1 420 75.0
CSS0008645 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 1.3e-174 616.7 422 73.7
Cc03_g02320 Coffea canephora HOM05D006883 ORTHO05D008624 2.2e-174 615.9 421 74.8
vmacro08200 Vaccinium macrocarpon HOM05D006883 ORTHO05D008624 3.8e-174 615.1 422 74.6
Rhsim04G0216600 Rhododendron simsii HOM05D006883 ORTHO05D008624 1.5e-173 613.2 422 73.7
Oeu044787.1 Olea europaea HOM05D006883 ORTHO05D008624 1.6e-172 609.8 421 74.6
Peaxi162Scf00386g00096 Petunia axillaris HOM05D006883 ORTHO05D008624 3.6e-172 608.6 408 76.0
QL06p007513 Quercus lobata HOM05D006883 ORTHO05D008624 4.7e-172 608.2 405 75.1
Aqoxy2G03105 Aquilegia oxysepala HOM05D006883 ORTHO05D008624 8.0e-172 607.4 424 74.5
Prupe.1G141800 Prunus persica HOM05D006883 ORTHO05D008624 1.5e-170 603.2 411 74.0
DCAR_030562 Daucus carota HOM05D006883 ORTHO05D008624 4.4e-170 601.7 414 73.9
Ciclev10005043m.g Citrus clementina HOM05D006883 ORTHO05D008624 5.7e-170 601.3 413 74.6
Potri.008G204900 Populus trichocarpa HOM05D006883 ORTHO05D008624 1.3e-169 600.1 421 72.9
COL.COLO4_13924 Corchorus olitorius HOM05D006883 ORTHO05D008624 8.3e-169 597.4 425 73.4
Lsat_1_v5_gn_3_24840 Lactuca sativa HOM05D006883 ORTHO05D008624 1.4e-168 596.7 422 72.7
RcHm_v2.0_Chr4g0421151 Rosa chinensis HOM05D006883 ORTHO05D008624 7.0e-168 594.3 419 73.5
Actinidia23426 Actinidia chinensis HOM05D006883 ORTHO05D008624 9.1e-168 594.0 389 77.1
Gorai.011G186200 Gossypium raimondii HOM05D006883 ORTHO05D008624 9.1e-168 594.0 422 72.5
FAN17G0491 Fragaria x ananassa HOM05D006883 ORTHO05D008624 1.2e-167 593.6 424 72.2
Dinv38322 Davidia involucrata HOM05D006883 ORTHO05D008624 1.6e-167 593.2 404 74.3
Thecc.04G278100 Theobroma cacao HOM05D006883 ORTHO05D008624 1.6e-167 593.2 422 71.8
Haze_01264 Corylus avellana HOM05D006883 ORTHO05D008624 2.7e-167 592.4 395 75.9
Gohir.A10G101275 Gossypium hirsutum HOM05D006883 ORTHO05D008624 3.5e-167 592.0 422 72.3
Sabra08G0157100 Salix brachista HOM05D006883 ORTHO05D008624 3.5e-167 592.0 421 71.5
TWI53G1857 Tripterygium wilfordii HOM05D006883 ORTHO05D008624 5.9e-167 591.3 421 71.3
CiPaw.02G086300 Carya illinoinensis HOM05D006883 ORTHO05D008624 7.7e-167 590.9 395 75.7
FAN22G2222 Fragaria x ananassa HOM05D006883 ORTHO05D008624 1.0e-166 590.5 425 71.5
TAR633G1607 Trochodendron aralioides HOM05D006883 ORTHO05D008624 1.0e-166 590.5 423 71.9
HanXRQChr08g0208101 Helianthus annuus HOM05D006883 ORTHO05D008624 1.7e-166 589.7 371 79.2
LjContig00389g0025618 Lotus japonicus HOM05D006883 ORTHO05D008624 1.7e-166 589.7 425 71.5
arahy.Tifrunner.gnm1.ann1.GN2N7N Arachis hypogaea HOM05D006883 ORTHO05D008624 2.2e-166 589.3 377 78.8
TWI53G0676 Tripterygium wilfordii HOM05D006883 ORTHO05D008624 2.2e-166 589.3 421 71.0
FvH4_4g17240 Fragaria vesca HOM05D006883 ORTHO05D008624 2.9e-166 589.0 425 71.8
FAN12G3260 Fragaria x ananassa HOM05D006883 ORTHO05D008624 2.9e-166 589.0 425 71.8
FAN12G0993 Fragaria x ananassa HOM05D006883 ORTHO05D008624 3.8e-166 588.6 425 71.5
arahy.Tifrunner.gnm1.ann1.WI0ZBZ Arachis hypogaea HOM05D006883 ORTHO05D008624 5.0e-166 588.2 377 78.8
Cfa015347 Carpinus fangiana HOM05D006883 ORTHO05D008624 5.0e-166 588.2 395 75.4
Eucgr.H03771 Eucalyptus grandis HOM05D006883 ORTHO05D008624 1.5e-165 586.6 419 70.6
unitig_748.g8372 Utricularia gibba HOM05D006883 ORTHO05D008624 1.5e-165 586.6 421 71.3
ECA246G3623 Erigeron canadensis HOM05D006883 ORTHO05D008624 5.5e-165 584.7 414 72.7
Lalb_Chr15g0087031 Lupinus albus HOM05D006883 ORTHO05D008624 5.5e-165 584.7 425 70.6
THA.LOC104802726 Tarenaya hassleriana HOM05D006883 ORTHO05D008624 7.2e-165 584.3 422 70.9
Ca_00572_v3 Cicer arietinum L. HOM05D006883 ORTHO05D008624 2.7e-164 582.4 397 73.6
Lalb_Chr18g0055701 Lupinus albus HOM05D006883 ORTHO05D008624 2.7e-164 582.4 425 70.1
AUR62041764 Chenopodium quinoa HOM05D006883 ORTHO05D008624 3.6e-164 582.0 355 81.4
Duzib052G0675 Durio zibethinus HOM05D006883 ORTHO05D008624 3.6e-164 582.0 422 70.4
Ah.06g192160 Amaranthus hybridus HOM05D006883 ORTHO05D008624 4.7e-164 581.6 385 75.6
CANSAT78G0922 Cannabis sativa HOM05D006883 ORTHO05D008624 6.1e-164 581.3 407 71.7
Psat1g187280 Pisum sativum HOM05D006883 ORTHO05D008624 6.1e-164 581.3 423 70.9
SGA_v2.0_scaffold973G53763 Striga asiatica HOM05D006883 ORTHO05D008624 8.0e-164 580.9 404 72.5
PGR004G1631 Punica granatum HOM05D006883 ORTHO05D008624 1.8e-163 579.7 401 73.6
Nn4g26002 Nelumbo nucifera HOM05D006883 ORTHO05D008624 3.0e-163 578.9 366 78.7
MD13G1173600 Malus domestica HOM05D006883 ORTHO05D008624 8.8e-163 577.4 413 71.9
Sed0024317 Sechium edule HOM05D006883 ORTHO05D008624 8.8e-163 577.4 421 70.1
CARHR194360 Cardamine hirsuta HOM05D006883 ORTHO05D008624 2.0e-162 576.2 410 71.5
Glyma.15G097700 Glycine max HOM05D006883 ORTHO05D008624 2.0e-162 576.2 422 70.6
AUR62041032 Chenopodium quinoa HOM05D006883 ORTHO05D008624 2.6e-162 575.9 355 80.0
CsaV3_3G014130 Cucumis sativus L. HOM05D006883 ORTHO05D008624 4.4e-162 575.1 421 69.6
PSO170G0113 Papaver somniferum HOM05D006883 ORTHO05D008624 5.7e-162 574.7 414 71.5
Glyma.13G215400 Glycine max HOM05D006883 ORTHO05D008624 2.2e-161 572.8 422 69.7
PSO210G3900 Papaver somniferum HOM05D006883 ORTHO05D008624 2.2e-161 572.8 415 71.6
Carub.0006s1695 Capsella rubella HOM05D006883 ORTHO05D008624 1.4e-160 570.1 419 69.5
Thhalv10013668m.g Eutrema salsugineum HOM05D006883 ORTHO05D008624 1.8e-160 569.7 422 69.7
AL6G29930 Arabidopsis lyrata HOM05D006883 ORTHO05D008624 4.1e-160 568.5 419 69.7
Sp6g25680 Schrenkiella parvula HOM05D006883 ORTHO05D008624 5.4e-160 568.2 422 69.7
Sc25g0004770 Simmondsia chinensis HOM05D006883 ORTHO05D008624 2.0e-159 566.2 401 71.8
EL10Ac4g09099 Beta vulgaris HOM05D006883 ORTHO05D008624 2.7e-159 565.8 403 72.0
Aa31LG11G10960 Aethionema arabicum HOM05D006883 ORTHO05D008624 3.5e-159 565.5 421 69.4
CDE11G0693 Ceratophyllum demersum HOM05D006883 ORTHO05D008624 4.5e-159 565.1 348 79.6
AT5G18660 Arabidopsis thaliana HOM05D006883 ORTHO05D008624 1.0e-158 563.9 419 69.5
BcaB08g36654 Brassica carinata HOM05D006883 ORTHO05D008624 2.3e-158 562.8 420 70.0
Phvul.006G161600 Phaseolus vulgaris HOM05D006883 ORTHO05D008624 1.9e-157 559.7 372 75.5
Medtr2g020160 Medicago truncatula HOM05D006883 ORTHO05D008624 2.5e-157 559.3 427 67.9
Atru.BG.87.p Acer truncatum HOM05D006883 ORTHO05D008624 5.6e-157 558.1 346 81.5
BraA10t44156Z Brassica rapa HOM05D006883 ORTHO05D008624 9.5e-157 557.4 417 69.1
BcaC04g18657 Brassica carinata HOM05D006883 ORTHO05D008624 8.0e-156 554.3 420 68.6
BolC9t58650H Brassica oleracea HOM05D006883 ORTHO05D008624 8.0e-156 554.3 420 68.6
TPR.G1530 Trifolium pratense HOM05D006883 ORTHO05D008624 1.4e-155 553.5 434 66.4
A10p20920 Brassica napus HOM05D006883 ORTHO05D008624 6.8e-155 551.2 417 68.6
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 9.8e-154 547.4 419 67.8
MBI19_g30852_MAGBIO Magnolia biondii HOM05D006883 ORTHO05D008624 2.0e-151 539.7 353 76.2
CSS0011936 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 3.0e-150 535.8 337 76.3
ATR0706G234 Amborella trichopoda HOM05D006883 ORTHO05D008624 3.9e-150 535.4 354 75.7
CSS0009780 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 1.6e-148 530.0 337 75.4
CDE02G1591 Ceratophyllum demersum HOM05D006883 ORTHO05D008624 1.4e-144 516.9 410 66.8
SEGI_20295 Sequoiadendron giganteum HOM05D006883 ORTHO05D008624 7.0e-144 514.6 355 72.7
Mapoly0058s0049 Marchantia polymorpha HOM05D006883 ORTHO05D008624 1.8e-139 500.0 342 70.8
AagrBONN_evm.TU.Sc2ySwM_369.460 Anthoceros agrestis HOM05D006883 ORTHO05D008624 4.0e-139 498.8 343 72.0
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 7.5e-138 494.6 372 68.5
HPP92_006930 Vanilla planifolia HOM05D006883 ORTHO05D008624 6.4e-137 491.5 343 68.5
Os03g0351200 Oryza sativa ssp. japonica HOM05D006883 ORTHO05D008624 5.2e-131 471.9 403 61.8
Pp3c7_3620 Physcomitrium patens HOM05D006883 ORTHO05D008624 2.2e-129 466.5 351 66.1
Zm00001eb016830 Zea mays HOM05D006883 ORTHO05D008624 8.4e-129 464.5 343 68.2
CBR_g77624 Chara braunii HOM05D006883 ORTHO05D008624 3.5e-127 459.1 352 64.8
Gohir.D10G166900 Gossypium hirsutum HOM05D006883 ORTHO05D008624 2.4e-120 436.4 254 84.6
Cpa.g.sc1008.1 Carica papaya HOM05D006883 ORTHO05D008624 4.6e-119 432.2 297 74.1
SMO174G0102 Selaginella moellendorffii HOM05D006883 ORTHO05D008624 5.1e-110 402.1 344 61.6
Cre01.g042800 Chlamydomonas reinhardtii HOM05D006883 ORTHO05D008624 6.7e-110 401.7 394 54.1
MCO03G528 Micromonas commoda HOM05D006883 ORTHO05D008624 2.6e-106 389.8 339 60.2
DCAR_030560 Daucus carota HOM05D006883 ORTHO05D008624 4.9e-105 385.6 233 82.0
MELO3C006606.2 Cucumis melo HOM05D006883 ORTHO05D008624 1.2e-98 364.4 222 79.7
Solyc01g067290.3 Solanum lycopersicum HOM05D006883 ORTHO05D008624 5.7e-93 345.5 192 86.5
DCAR_030558 Daucus carota HOM05D006883 ORTHO05D008624 8.2e-92 341.7 192 84.4
PRCOL_00006445 Prasinoderma coloniale HOM05D006883 ORTHO05D008624 4.5e-66 256.1 337 41.8
Migut.M00184 Erythranthe guttata HOM05D006883 ORTHO05D008624 2.1e-63 247.3 122 100.0
Oeu061954.1 Olea europaea HOM05D006883 ORTHO05D008624 6.2e-31 139.4 121 59.5
GSVIVG01017797001 Vitis vinifera HOM05D006883 ORTHO05D008624 1.0e-17 95.5 145 44.1
Glyma.11G070200 Glycine max HOM05D000342 ORTHO05D000217 7.1e-11 72.8 245 28.6
Glyma.01G172900 Glycine max HOM05D000342 ORTHO05D000217 1.6e-10 71.6 300 27.7
MBI08_g19978_MAGBIO Magnolia biondii HOM05D006026 ORTHO05D007502 1.2e-07 62.0 330 22.1
QL06p046772 Quercus lobata HOM05D000342 ORTHO05D000217 2.1e-07 61.2 254 24.0
HPP92_014702 Vanilla planifolia HOM05D000342 ORTHO05D000217 2.1e-07 61.2 256 24.6
Dinv31217 Davidia involucrata HOM05D000342 ORTHO05D000217 3.6e-07 60.5 253 27.3
Gorai.008G067100 Gossypium raimondii HOM05D000342 ORTHO05D000217 3.6e-07 60.5 254 26.4
Dinv00848 Davidia involucrata HOM05D000342 ORTHO05D000217 4.7e-07 60.1 252 27.0
Lj5A173T64 Lonicera japonica HOM05D006026 ORTHO05D007502 4.7e-07 60.1 330 22.4
Cpa.g.sc6.140 Carica papaya HOM05D000342 ORTHO05D000217 6.2e-07 59.7 252 23.8
Dinv42709 Davidia involucrata HOM05D000342 ORTHO05D000217 6.2e-07 59.7 252 26.6
Dinv43392 Davidia involucrata HOM05D000342 ORTHO05D000217 6.2e-07 59.7 252 26.6
Lj1g0012573 Lotus japonicus HOM05D006026 ORTHO05D007502 6.2e-07 59.7 330 21.8
Phvul.009G116200 Phaseolus vulgaris HOM05D006026 ORTHO05D007502 6.2e-07 59.7 395 20.3
Psat2g158280 Pisum sativum HOM05D000342 ORTHO05D000217 6.2e-07 59.7 230 24.8
TPR.G2351 Trifolium pratense HOM05D000342 ORTHO05D000217 6.2e-07 59.7 230 25.7
Cfa004332 Carpinus fangiana HOM05D000342 ORTHO05D000217 8.1e-07 59.3 243 23.9
Lj2g0027531 Lotus japonicus HOM05D000342 ORTHO05D000217 8.1e-07 59.3 232 27.6
Medtr5g020740 Medicago truncatula HOM05D000342 ORTHO05D000217 8.1e-07 59.3 230 25.7
arahy.Tifrunner.gnm1.ann1.A1R83D Arachis hypogaea HOM05D000342 ORTHO05D000217 1.1e-06 58.9 232 27.2
Glyma.01G172700 Glycine max HOM05D000342 ORTHO05D000217 1.1e-06 58.9 230 27.8
Peaxi162Scf00003g01433 Petunia axillaris HOM05D005785 ORTHO05D007962 1.1e-06 58.9 377 23.9
Thecc.01G032500 Theobroma cacao HOM05D000342 ORTHO05D000217 1.4e-06 58.5 260 24.2
TAR376G0292 Trochodendron aralioides HOM05D000342 ORTHO05D000217 1.4e-06 58.5 252 25.4
CiPaw.01G043900 Carya illinoinensis HOM05D000342 ORTHO05D000217 1.8e-06 58.2 244 25.0
Phvul.002G033200 Phaseolus vulgaris HOM05D000342 ORTHO05D000217 1.8e-06 58.2 240 27.1
CSS0009314 Camellia sinensis var. sinensis HOM05D006026 ORTHO05D007502 2.4e-06 57.8 330 22.1
Dinv19546 Davidia involucrata HOM05D000101 ORTHO05D000089 2.4e-06 57.8 253 26.5
Rhsim11G0172800 Rhododendron simsii HOM05D005785 ORTHO05D007962 2.4e-06 57.8 227 29.1
SMO134G0234 Selaginella moellendorffii HOM05D000342 ORTHO05D000217 2.4e-06 57.8 243 22.6
arahy.Tifrunner.gnm1.ann1.C9RI5X Arachis hypogaea HOM05D006026 ORTHO05D007502 3.1e-06 57.4 330 21.8
arahy.Tifrunner.gnm1.ann1.NGL2PI Arachis hypogaea HOM05D006026 ORTHO05D007502 3.1e-06 57.4 330 21.8
Glyma.11G070300 Glycine max HOM05D000342 ORTHO05D000217 3.1e-06 57.4 231 28.1
Haze_15072 Corylus avellana HOM05D000342 ORTHO05D000217 4.0e-06 57.0 303 22.4
Psat5g000600 Pisum sativum HOM05D006026 ORTHO05D007502 4.0e-06 57.0 330 20.9
Sabra04G0123100 Salix brachista HOM05D006026 ORTHO05D007502 4.0e-06 57.0 375 22.4
AUR62007401 Chenopodium quinoa HOM05D000342 ORTHO05D000217 5.2e-06 56.6 247 25.1
Nitab4.5_0000031g0370 Nicotiana tabacum HOM05D000342 ORTHO05D000217 5.2e-06 56.6 243 26.7
Oeu023320.2 Olea europaea HOM05D000342 ORTHO05D000217 5.2e-06 56.6 230 27.8
TPR.G38515 Trifolium pratense HOM05D006026 ORTHO05D007502 5.2e-06 56.6 345 20.9
DCAR_013829 Daucus carota HOM05D000342 ORTHO05D000217 6.9e-06 56.2 227 28.2
QL06p046794 Quercus lobata HOM05D000342 ORTHO05D000217 6.9e-06 56.2 246 24.0
Aqoxy6G00992 Aquilegia oxysepala HOM05D005785 ORTHO05D007962 9.0e-06 55.8 201 29.4
Glyma.04G001500 Glycine max HOM05D006026 ORTHO05D007502 9.0e-06 55.8 330 21.5
QL06p046857 Quercus lobata HOM05D000342 ORTHO05D000217 9.0e-06 55.8 259 24.3
TPR.G2388 Trifolium pratense HOM05D000342 ORTHO05D000217 9.0e-06 55.8 230 26.5
TAR376G0476 Trochodendron aralioides HOM05D000342 ORTHO05D000217 9.0e-06 55.8 252 24.2
TAR376G0586 Trochodendron aralioides HOM05D000342 ORTHO05D000217 9.0e-06 55.8 252 24.2


User provided reference genes

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