Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 0.0e+00 2038.1 1019 100.0
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 0.0e+00 1511.9 874 88.7
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 0.0e+00 1372.8 1003 67.4
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 0.0e+00 1337.0 1050 62.9
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1243.0 1056 57.5
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1241.1 1089 59.3
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1236.9 1021 61.2
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1206.0 1006 58.6
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1204.9 1087 55.4
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 0.0e+00 1199.1 1036 56.9
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1198.3 1094 55.9
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1186.4 992 57.7
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 0.0e+00 1168.3 946 61.0
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1162.1 1126 53.6
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1152.5 1024 56.5
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1144.4 1065 54.6
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1135.2 1021 56.5
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1115.1 1061 53.7
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1114.8 1054 53.9
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1110.1 1028 53.7
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1107.8 1034 54.6
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1104.4 1025 53.8
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1097.0 1066 53.1
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1092.4 1056 51.7
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1083.6 1032 53.7
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 0.0e+00 1081.2 1052 53.2
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1080.1 1056 52.1
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1079.3 1035 53.1
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1078.9 1045 52.7
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1076.2 1032 52.9
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1076.2 1050 53.0
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 2.8e-311 1072.0 1051 52.8
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 2.8e-311 1072.0 1032 53.6
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 9.0e-310 1067.0 1036 53.5
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 2.0e-309 1065.8 1009 54.0
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 2.0e-309 1065.8 1009 54.0
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 1.3e-308 1063.1 1059 51.6
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.4e-307 1059.7 1070 51.7
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 1.4e-307 1059.7 1041 53.1
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 1.8e-305 1052.7 1058 51.3
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 1.1e-304 1050.0 1062 51.6
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.5e-304 1048.9 1042 51.8
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 3.3e-304 1048.5 875 61.3
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 1.5e-301 1039.6 1030 51.6
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 7.6e-301 1037.3 1062 51.5
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 1.3e-300 1036.6 1075 51.3
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 1.7e-300 1036.2 1044 51.7
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.0e-297 1026.9 1033 49.7
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 3.9e-297 1025.0 941 52.6
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 3.1e-294 1015.4 1022 51.1
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 9.0e-294 1013.8 1022 50.9
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.9e-291 1006.1 1094 47.3
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 1.8e-289 999.6 1020 50.6
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.5e-288 996.5 960 53.6
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 2.2e-287 992.6 1030 49.5
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 2.2e-287 992.6 1033 49.4
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 8.2e-287 990.7 1061 48.7
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 1.5e-285 986.5 992 50.6
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 4.5e-285 984.9 1017 49.9
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 4.2e-283 978.4 1018 50.6
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.0e-281 973.8 957 53.2
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 5.1e-281 971.5 1027 48.0
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 8.8e-281 970.7 1044 48.2
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 5.7e-280 968.0 1027 48.5
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 1.3e-279 966.8 1030 48.3
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 8.2e-279 964.1 1059 48.3
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 3.1e-278 962.2 1042 47.8
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 4.1e-278 961.8 926 53.3
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 1.3e-276 956.8 1021 48.1
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 5.0e-276 954.9 1041 48.5
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 5.5e-275 951.4 1035 47.0
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 1.1e-272 943.7 968 49.7
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 1.2e-269 933.7 692 65.9
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 5.0e-268 928.3 899 54.8
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 7.5e-264 914.4 1018 48.3
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 9.7e-264 914.1 1018 48.2
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 9.1e-262 907.5 1045 47.5
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 7.7e-261 904.4 1084 44.6
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 6.1e-250 868.2 900 49.6
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 3.4e-248 862.4 854 52.1
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 1.3e-247 860.5 769 57.2
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 3.1e-246 855.9 907 48.6
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 9.2e-246 854.4 1017 45.4
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 4.3e-243 845.5 784 53.1
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 1.6e-242 843.6 990 44.8
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 1.1e-238 830.9 1065 41.6
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 1.5e-232 810.4 733 55.4
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 2.9e-231 806.2 1027 42.8
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.1e-219 767.7 693 55.3
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 7.1e-214 748.4 760 52.4
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 6.2e-210 735.3 1047 40.8
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.8e-209 733.8 550 64.2
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 9.9e-208 728.0 1005 38.7
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.7e-207 727.2 586 59.9
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 6.9e-177 625.5 658 49.5
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.4e-169 601.3 640 48.4
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 3.0e-164 583.6 575 51.1
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 2.0e-123 448.0 502 48.2
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 3.1e-108 397.5 351 57.3
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 9.2e-105 386.0 330 59.7
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 7.1e-89 333.2 327 50.5
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 2.2e-82 311.6 402 43.5
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 7.4e-78 296.6 1003 26.5
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 9.6e-78 296.2 218 60.1
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 2.6e-67 261.5 272 47.4
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 5.8e-67 260.4 226 54.4
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 1.0e-63 249.6 219 56.6
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 4.1e-60 237.7 189 59.8
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.2e-51 209.5 179 57.5
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 7.7e-51 206.8 191 55.5
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 1.0e-50 206.5 268 45.5
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.4e-49 202.6 191 53.4
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.1e-48 198.7 191 52.9
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.8e-44 185.7 873 23.7
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 1.7e-42 179.1 130 60.8
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 8.8e-39 166.8 344 32.6
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 1.5e-38 166.0 207 44.4
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 9.7e-38 163.3 206 37.9
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 2.0e-35 155.6 132 56.1
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 5.0e-34 151.0 135 55.6
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 5.0e-34 151.0 134 56.7
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.5e-33 149.4 1071 21.9
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 4.2e-33 147.9 115 56.5
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 1.3e-29 136.3 125 53.6
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.2e-29 135.6 536 25.7
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 2.4e-28 132.1 154 42.2
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.7e-26 125.9 506 21.9
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 2.7e-24 118.6 123 46.3
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 1.2e-22 113.2 84 59.5
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.5e-22 112.8 84 58.3
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 1.1e-20 106.7 122 45.9
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 8.6e-18 97.1 1001 21.5
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 3.3e-17 95.1 77 55.8
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.4e-15 89.7 586 21.5
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.8e-15 89.4 457 25.2
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 4.4e-14 84.7 78 50.0
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 9.8e-14 83.6 479 22.3
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 5.4e-12 77.8 258 25.6
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 1.6e-11 76.3 58 58.6
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 4.6e-11 74.7 58 56.9
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 3.3e-09 68.6 57 54.4
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 9.5e-09 67.0 86 41.9
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.2e-08 66.6 68 48.5
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.8e-07 62.8 47 51.1
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 2.3e-07 62.4 47 48.9
AagrBONN_evm.TU.Sc2ySwM_340.308 Anthoceros agrestis HOM05D005069 ORTHO05D006024 5.8e-06 57.8 212 26.9


User provided reference genes

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