Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 3.4e-78 295.0 164 100.0
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 2.4e-47 192.6 175 65.7
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 4.1e-47 191.8 174 63.8
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 5.4e-47 191.4 171 63.2
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 8.6e-45 184.1 179 58.7
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 8.0e-43 177.6 185 56.8
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 1.4e-42 176.8 185 57.8
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 1.8e-42 176.4 192 58.3
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 1.2e-41 173.7 193 53.4
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 3.4e-41 172.2 182 57.1
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.9e-40 169.1 187 55.6
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 1.4e-39 166.8 189 55.6
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 2.4e-39 166.0 179 57.0
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 7.0e-39 164.5 182 54.4
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 2.0e-38 162.9 181 54.7
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 2.0e-38 162.9 185 55.1
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 1.0e-37 160.6 192 53.1
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 1.3e-37 160.2 187 51.3
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 3.9e-37 158.7 183 53.0
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 3.9e-37 158.7 199 60.8
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 5.0e-37 158.3 193 56.5
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 8.6e-37 157.5 186 55.9
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 1.9e-36 156.4 195 52.3
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 2.5e-36 156.0 186 51.1
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 2.5e-36 156.0 186 51.1
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 2.5e-36 156.0 191 51.3
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 3.3e-36 155.6 188 52.1
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 5.6e-36 154.8 180 51.7
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 5.6e-36 154.8 187 51.9
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 7.3e-36 154.5 177 55.4
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.6e-35 153.3 193 50.8
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 1.6e-35 153.3 166 57.8
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 2.1e-35 152.9 186 52.7
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 3.6e-35 152.1 192 50.5
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 3.6e-35 152.1 184 50.5
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 4.7e-35 151.8 184 54.9
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 4.7e-35 151.8 195 59.0
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 8.0e-35 151.0 187 56.7
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 8.0e-35 151.0 200 53.0
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 3.1e-34 149.1 184 51.6
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.1e-34 149.1 184 51.6
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.1e-34 149.1 184 51.6
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 4.0e-34 148.7 189 53.4
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 4.0e-34 148.7 194 50.0
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 6.8e-34 147.9 188 54.3
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 8.9e-34 147.5 183 49.2
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.4e-33 145.2 183 50.3
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 5.8e-33 144.8 193 50.8
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 5.8e-33 144.8 182 51.1
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 7.5e-33 144.4 177 50.8
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 7.5e-33 144.4 172 52.3
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 7.5e-33 144.4 172 52.3
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 7.5e-33 144.4 204 50.5
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 9.8e-33 144.1 188 47.9
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.3e-32 143.7 195 47.7
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.7e-32 143.3 172 50.6
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.7e-32 143.3 188 52.7
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.2e-32 142.9 171 52.6
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 2.9e-32 142.5 181 49.7
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 3.7e-32 142.1 193 48.7
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.1e-31 140.6 185 49.7
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.1e-31 140.6 184 52.2
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 2.4e-31 139.4 181 53.6
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 3.2e-31 139.0 184 46.7
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.2e-31 139.0 190 50.0
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 3.2e-31 139.0 199 44.7
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 3.2e-31 139.0 183 48.6
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 4.1e-31 138.7 188 50.5
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 5.4e-31 138.3 187 50.3
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 7.0e-31 137.9 188 48.9
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 1.2e-30 137.1 174 50.6
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.1e-30 136.3 189 46.6
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 2.1e-30 136.3 180 48.9
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 2.7e-30 136.0 193 46.1
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 3.5e-30 135.6 174 47.1
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 4.6e-30 135.2 189 46.0
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 7.8e-30 134.4 183 48.6
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.3e-29 133.7 185 48.6
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.3e-29 133.7 192 49.0
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 1.3e-29 133.7 185 48.6
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.7e-29 133.3 197 46.7
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.3e-29 132.9 187 48.7
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.3e-29 132.9 190 48.9
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 3.9e-29 132.1 187 51.3
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 3.9e-29 132.1 187 48.7
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 5.0e-29 131.7 191 48.2
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 6.6e-29 131.3 194 46.9
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 8.6e-29 131.0 186 45.2
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 1.1e-28 130.6 167 51.5
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 1.1e-28 130.6 167 51.5
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 1.1e-28 130.6 185 46.5
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 1.1e-28 130.6 175 51.4
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 1.5e-28 130.2 167 50.9
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 1.5e-28 130.2 167 50.9
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 1.5e-28 130.2 167 50.9
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.5e-28 130.2 191 46.1
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 3.3e-28 129.0 189 46.0
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 5.6e-28 128.3 188 45.7
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 5.6e-28 128.3 195 44.6
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 1.2e-27 127.1 185 47.0
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.1e-27 126.3 189 45.5
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 2.1e-27 126.3 185 49.7
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 6.2e-27 124.8 194 42.8
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 1.4e-26 123.6 206 41.7
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 1.4e-26 123.6 206 41.7
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 2.3e-26 122.9 212 42.0
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 4.0e-26 122.1 211 41.7
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 5.2e-26 121.7 208 40.9
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 5.2e-26 121.7 190 46.3
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 8.9e-26 120.9 191 51.3
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 1.2e-25 120.6 183 48.6
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 2.6e-25 119.4 177 41.8
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 3.4e-25 119.0 168 47.6
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 3.4e-25 119.0 186 44.6
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 4.4e-25 118.6 191 42.9
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 4.4e-25 118.6 191 42.9
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 4.4e-25 118.6 191 44.0
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 4.4e-25 118.6 198 42.9
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 1.3e-24 117.1 196 40.8
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 3.7e-24 115.5 191 42.4
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 3.7e-24 115.5 191 42.4
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 3.7e-24 115.5 188 42.0
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 4.9e-24 115.2 211 40.3
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 1.1e-23 114.0 186 45.7
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 1.1e-23 114.0 186 45.7
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 5.4e-23 111.7 194 43.3
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 5.4e-23 111.7 172 45.9
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 9.2e-23 110.9 168 41.7
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 1.2e-22 110.5 86 72.1
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 7.3e-20 101.3 182 38.5
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 3.6e-19 99.0 172 40.7
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 5.2e-18 95.1 84 63.1
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 6.8e-18 94.7 176 38.1
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 5.8e-17 91.7 177 39.5
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 8.4e-16 87.8 165 36.4
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 2.1e-14 83.2 68 69.1
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 4.6e-14 82.0 77 58.4
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 1.3e-13 80.5 177 37.9
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 6.6e-13 78.2 210 32.4
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.2e-11 73.9 151 35.8
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 8.1e-11 71.2 75 57.3
unitig_88.g27793 Utricularia gibba HOM05D005099 ORTHO05D006087 2.4e-10 69.7 169 37.9
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 6.9e-10 68.2 43 69.8
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 3.2e-07 59.3 148 36.5
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 1.6e-06 57.0 170 29.4
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 2.1e-06 56.6 162 32.1
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 2.1e-06 56.6 168 28.6
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 3.5e-06 55.8 160 30.0


User provided reference genes

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