Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00012 Erythranthe guttata HOM05D005985 ORTHO05D007403 4.1e-127 458.0 219 100.0
Migut.O00392 Erythranthe guttata HOM05D005985 ORTHO05D007403 1.7e-120 436.0 222 94.6
SGA_v2.0_scaffold64G22045 Striga asiatica HOM05D005985 ORTHO05D007403 3.6e-99 365.2 222 82.9
Oeu020283.1 Olea europaea HOM05D005985 ORTHO05D007403 8.9e-98 360.5 217 81.1
Nitab4.5_0000781g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 3.4e-97 358.6 219 79.9
Peaxi162Scf00103g01922 Petunia axillaris HOM05D005985 ORTHO05D007403 7.6e-97 357.5 222 79.7
Nitab4.5_0000204g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 1.2e-94 350.1 218 78.4
SalBow8G2871 Salvia bowleyana HOM05D005985 ORTHO05D007403 7.8e-94 347.4 222 77.9
Actinidia02521 Actinidia chinensis HOM05D005985 ORTHO05D007403 1.3e-93 346.7 222 75.2
Dinv29531 Davidia involucrata HOM05D005985 ORTHO05D007403 1.1e-92 343.6 222 76.1
Solyc03g096040.3 Solanum lycopersicum HOM05D005985 ORTHO05D007403 1.1e-92 343.6 222 75.7
Sopen03g026120 Solanum pennellii HOM05D005985 ORTHO05D007403 1.5e-92 343.2 222 75.7
Sc24g0001290 Simmondsia chinensis HOM05D005985 ORTHO05D007403 9.6e-92 340.5 222 73.9
unitig_88.g27789 Utricularia gibba HOM05D000412 ORTHO05D007403 1.2e-91 340.1 222 75.7
ECA233G5395 Erigeron canadensis HOM05D005985 ORTHO05D007403 2.1e-91 339.3 222 76.6
Lsat_1_v5_gn_6_69481 Lactuca sativa HOM05D005985 ORTHO05D007403 6.2e-91 337.8 222 75.7
HanXRQChr07g0194341 Helianthus annuus HOM05D005985 ORTHO05D007403 8.1e-91 337.4 222 75.2
Haze_00800 Corylus avellana HOM05D005985 ORTHO05D007403 2.4e-90 335.9 222 73.9
PGSC0003DMG400027720 Solanum tuberosum HOM05D005985 ORTHO05D007403 2.4e-90 335.9 222 74.8
DCAR_023383 Daucus carota HOM05D005985 ORTHO05D007403 4.0e-90 335.1 222 73.0
Lj6A699T60 Lonicera japonica HOM05D005985 ORTHO05D007403 5.2e-90 334.7 222 72.5
Nn3g21870 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.2e-89 333.6 222 73.4
Atru.chr4.3125 Acer truncatum HOM05D005985 ORTHO05D007403 2.0e-89 332.8 222 74.3
Manes.15G003600 Manihot esculenta HOM05D005985 ORTHO05D007403 2.6e-89 332.4 222 73.9
AUR62029991 Chenopodium quinoa HOM05D005985 ORTHO05D007403 3.4e-89 332.0 221 72.4
Cfa015714 Carpinus fangiana HOM05D005985 ORTHO05D007403 5.8e-89 331.3 223 73.5
Eucgr.G02036 Eucalyptus grandis HOM05D005985 ORTHO05D007403 5.8e-89 331.3 222 73.4
GSVIVG01017666001 Vitis vinifera HOM05D005985 ORTHO05D007403 9.9e-89 330.5 221 73.3
AUR62002570 Chenopodium quinoa HOM05D005985 ORTHO05D007403 2.9e-88 328.9 221 71.9
EL10Ac3g06274 Beta vulgaris HOM05D005985 ORTHO05D007403 3.8e-88 328.6 221 71.0
PSO144G0010 Papaver somniferum HOM05D005985 ORTHO05D007403 3.8e-88 328.6 222 72.1
MBI18_g28902_MAGBIO Magnolia biondii HOM05D005985 ORTHO05D007403 6.4e-88 327.8 222 72.5
Ca_18238_v3 Cicer arietinum L. HOM05D005985 ORTHO05D007403 1.1e-87 327.0 221 71.9
QL06p013713 Quercus lobata HOM05D005985 ORTHO05D007403 1.4e-87 326.6 221 71.5
MD13G1144500 Malus domestica HOM05D005985 ORTHO05D007403 1.9e-87 326.2 222 73.0
CSS0012631 Camellia sinensis var. sinensis HOM05D005985 ORTHO05D007403 7.1e-87 324.3 231 69.7
TWI09G1588 Tripterygium wilfordii HOM05D005985 ORTHO05D007403 1.2e-86 323.6 221 72.4
Gorai.011G204600 Gossypium raimondii HOM05D005985 ORTHO05D007403 1.6e-86 323.2 222 71.6
Medtr4g094720 Medicago truncatula HOM05D005985 ORTHO05D007403 1.6e-86 323.2 221 71.9
CANSAT78G1051 Cannabis sativa HOM05D005985 ORTHO05D007403 2.1e-86 322.8 221 70.6
PSO210G5602 Papaver somniferum HOM05D005985 ORTHO05D007403 4.6e-86 321.6 222 69.8
Potri.008G099900 Populus trichocarpa HOM05D005985 ORTHO05D007403 4.6e-86 321.6 222 72.1
PGR031G1426 Punica granatum HOM05D005985 ORTHO05D007403 6.0e-86 321.2 221 71.0
TPR.G31247 Trifolium pratense HOM05D005985 ORTHO05D007403 6.0e-86 321.2 220 71.4
Gohir.D10G182600 Gossypium hirsutum HOM05D005985 ORTHO05D007403 1.3e-85 320.1 222 71.2
PSO761G0261 Papaver somniferum HOM05D005985 ORTHO05D007403 1.7e-85 319.7 222 69.4
CsaV3_3G015450 Cucumis sativus L. HOM05D005985 ORTHO05D007403 2.3e-85 319.3 222 69.8
Rhsim02G0000600 Rhododendron simsii HOM05D005985 ORTHO05D007403 5.1e-85 318.2 222 68.9
Gohir.A10G176000 Gossypium hirsutum HOM05D005985 ORTHO05D007403 6.6e-85 317.8 222 69.8
Phvul.002G189300 Phaseolus vulgaris HOM05D005985 ORTHO05D007403 6.6e-85 317.8 220 70.9
Sabra08G0075600 Salix brachista HOM05D005985 ORTHO05D007403 8.7e-85 317.4 222 71.6
Prupe.1G109000 Prunus persica HOM05D005985 ORTHO05D007403 1.9e-84 316.2 222 73.0
RcHm_v2.0_Chr4g0426681 Rosa chinensis HOM05D005985 ORTHO05D007403 1.9e-84 316.2 222 70.7
CDE02G0842 Ceratophyllum demersum HOM05D005985 ORTHO05D007403 2.5e-84 315.8 222 68.5
ClCG05G006800 Citrullus lanatus HOM05D005985 ORTHO05D007403 3.3e-84 315.5 221 68.8
Glyma.08G088000 Glycine max HOM05D005985 ORTHO05D007403 5.6e-84 314.7 220 70.5
Aa31LG10G5610 Aethionema arabicum HOM05D005985 ORTHO05D007403 1.6e-83 313.2 221 68.8
AT1G48130 Arabidopsis thaliana HOM05D005985 ORTHO05D007403 2.1e-83 312.8 216 71.8
Psat7g085840 Pisum sativum HOM05D005985 ORTHO05D007403 2.1e-83 312.8 221 69.7
Carub.0001s3723 Capsella rubella HOM05D005985 ORTHO05D007403 6.2e-83 311.2 216 71.3
VMungo0251G0059 Vigna mungo HOM05D005985 ORTHO05D007403 1.4e-82 310.1 221 68.3
ATR0796G055 Amborella trichopoda HOM05D005985 ORTHO05D007403 1.8e-82 309.7 221 69.7
Aqoxy2G02563 Aquilegia oxysepala HOM05D005985 ORTHO05D007403 1.8e-82 309.7 222 69.4
FAN17G1815 Fragaria x ananassa HOM05D005985 ORTHO05D007403 1.8e-82 309.7 222 68.5
Sp1g35100 Schrenkiella parvula HOM05D005985 ORTHO05D007403 1.8e-82 309.7 217 70.0
MELO3C006744.2 Cucumis melo HOM05D005985 ORTHO05D007403 2.4e-82 309.3 236 65.7
Duzib128G0500 Durio zibethinus HOM05D005985 ORTHO05D007403 2.4e-82 309.3 222 67.6
Manes.03G210400 Manihot esculenta HOM05D005985 ORTHO05D007403 3.1e-82 308.9 222 67.6
AL1G54700 Arabidopsis lyrata HOM05D005985 ORTHO05D007403 4.0e-82 308.5 216 70.8
arahy.Tifrunner.gnm1.ann1.7BH383 Arachis hypogaea HOM05D005985 ORTHO05D007403 4.0e-82 308.5 221 68.8
arahy.Tifrunner.gnm1.ann1.BM2Q5K Arachis hypogaea HOM05D005985 ORTHO05D007403 4.0e-82 308.5 221 68.8
Duzib128G2054 Durio zibethinus HOM05D005985 ORTHO05D007403 5.3e-82 308.1 222 67.6
Lj4g0025954 Lotus japonicus HOM05D005985 ORTHO05D007403 5.3e-82 308.1 220 68.6
TAR362G0466 Trochodendron aralioides HOM05D005985 ORTHO05D007403 1.5e-81 306.6 248 63.3
HPP92_020535 Vanilla planifolia HOM05D005985 ORTHO05D007403 5.8e-81 304.7 221 67.4
Duzib212G0534 Durio zibethinus HOM05D005985 ORTHO05D007403 7.6e-81 304.3 221 66.5
Lalb_Chr07g0188301 Lupinus albus HOM05D005985 ORTHO05D007403 1.3e-80 303.5 219 68.0
BcaC05g27595 Brassica carinata HOM05D005985 ORTHO05D007403 3.8e-80 302.0 214 69.2
C05p35800 Brassica napus HOM05D005985 ORTHO05D007403 3.8e-80 302.0 214 69.2
A05p21210 Brassica napus HOM05D005985 ORTHO05D007403 4.9e-80 301.6 214 69.2
BolC6t37315H Brassica oleracea HOM05D005985 ORTHO05D007403 6.4e-80 301.2 214 68.7
Thhalv10012121m.g Eutrema salsugineum HOM05D005985 ORTHO05D007403 2.4e-79 299.3 217 68.7
FvH4_4g21120 Fragaria vesca HOM05D005985 ORTHO05D007403 2.4e-79 299.3 215 68.8
Os07g0638300 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 2.4e-79 299.3 221 65.6
BolC5t32296H Brassica oleracea HOM05D005985 ORTHO05D007403 5.4e-79 298.1 214 68.7
Zm00001eb328770 Zea mays HOM05D005985 ORTHO05D007403 1.2e-78 297.0 229 63.8
THA.LOC104821806 Tarenaya hassleriana HOM05D005985 ORTHO05D007403 2.1e-78 296.2 220 67.3
BcaB02g10720 Brassica carinata HOM05D005985 ORTHO05D007403 7.9e-78 294.3 214 67.3
BraA05t21027Z Brassica rapa HOM05D005985 ORTHO05D007403 5.1e-77 291.6 229 64.6
BraA05t20750Z Brassica rapa HOM05D005985 ORTHO05D007403 8.7e-77 290.8 229 64.2
Cpa.g.sc146.45 Carica papaya HOM05D005985 ORTHO05D007403 8.7e-77 290.8 222 63.1
CARHR037770 Cardamine hirsuta HOM05D005985 ORTHO05D007403 1.9e-76 289.7 214 67.3
Ciclev10007138m.g Citrus clementina HOM05D005985 ORTHO05D007403 9.6e-76 287.3 215 67.0
Os07g0638400 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 9.6e-76 287.3 221 63.8
CAN.G546.41 Capsicum annuum HOM05D005985 ORTHO05D007403 8.1e-75 284.3 222 64.9
Duzib212G0439 Durio zibethinus HOM05D005985 ORTHO05D007403 1.8e-74 283.1 221 64.3
Nn4g25416 Nelumbo nucifera HOM05D005985 ORTHO05D007403 2.4e-74 282.7 301 51.5
SEGI_14508 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 2.4e-71 272.7 219 59.8
SMO367G0796 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 1.9e-68 263.1 219 58.4
Pp3c22_8470 Physcomitrium patens HOM05D005985 ORTHO05D007403 2.5e-68 262.7 219 61.2
Mapoly0057s0102 Marchantia polymorpha HOM05D005985 ORTHO05D007403 4.0e-66 255.4 219 58.4
AagrBONN_evm.TU.Sc2ySwM_228.1443 Anthoceros agrestis HOM05D005985 ORTHO05D007403 6.9e-66 254.6 221 59.3
CBR_g8949 Chara braunii HOM05D005985 ORTHO05D007403 2.2e-64 249.6 219 59.4
COL.COLO4_34540 Corchorus olitorius HOM05D005985 ORTHO05D007403 3.2e-63 245.7 169 72.2
Pp3c10_21340 Physcomitrium patens HOM05D005985 ORTHO05D007403 3.4e-57 225.7 218 50.9
SEGI_03003 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 1.9e-55 219.9 218 48.6
Mapoly0042s0090 Marchantia polymorpha HOM05D005985 ORTHO05D007403 2.5e-55 219.5 218 49.5
AagrBONN_evm.TU.Sc2ySwM_117.1081 Anthoceros agrestis HOM05D005985 ORTHO05D007403 3.2e-55 219.2 219 48.9
Pp3c20_21100 Physcomitrium patens HOM05D005985 ORTHO05D007403 5.5e-55 218.4 218 48.6
PRCOL_00004927 Prasinoderma coloniale HOM05D005985 ORTHO05D007403 3.6e-54 215.7 224 48.7
SMO147G0228 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 5.7e-52 208.4 216 46.8
AagrBONN_evm.TU.Sc2ySwM_228.1273 Anthoceros agrestis HOM05D005985 ORTHO05D007403 1.1e-44 184.1 222 42.3
Thecc.04G309900 Theobroma cacao HOM05D005985 ORTHO05D007403 1.3e-43 180.6 128 70.3
Cfa026758 Carpinus fangiana HOM05D005985 ORTHO05D007403 2.6e-41 172.9 220 41.8
Haze_27189 Corylus avellana HOM05D005985 ORTHO05D007403 2.3e-37 159.8 216 40.3
Glyma.05G133500 Glycine max HOM05D005985 ORTHO05D007403 5.2e-37 158.7 109 67.9
AagrBONN_evm.TU.Sc2ySwM_344.4472 Anthoceros agrestis HOM05D005985 ORTHO05D007403 8.2e-35 151.4 213 39.0
Glyma.05G133466 Glycine max HOM05D005985 ORTHO05D007403 1.8e-34 150.2 108 70.4
MD16G1139600 Malus domestica HOM05D005985 ORTHO05D007403 2.6e-33 146.4 183 48.1
GSVIVG01034909001 Vitis vinifera HOM05D005985 ORTHO05D007403 1.7e-32 143.7 119 60.5
Nn1g05419 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.4e-29 134.0 89 68.5
C06p21300 Brassica napus HOM05D005985 ORTHO05D007403 5.7e-28 128.6 88 63.6
Nn1g05808 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.6e-25 120.6 96 61.5
GSVIVG01017665001 Vitis vinifera HOM05D005985 ORTHO05D007403 1.9e-23 113.6 102 56.9
Gorai.001G249700 Gossypium raimondii HOM05D005985 ORTHO05D007403 3.6e-22 109.4 76 68.4
Gohir.D01G126866 Gossypium hirsutum HOM05D005985 ORTHO05D007403 2.6e-20 103.2 75 66.7
CAN.G574.32 Capsicum annuum HOM05D003127 ORTHO05D003709 5.7e-20 102.1 179 32.4
Sopen01g003280 Solanum pennellii HOM05D003127 ORTHO05D003709 5.7e-20 102.1 179 33.0
Manes.09G047500 Manihot esculenta HOM05D003127 ORTHO05D003709 7.5e-20 101.7 182 33.5
Nitab4.5_0000020g0330 Nicotiana tabacum HOM05D003127 ORTHO05D003709 1.3e-19 100.9 179 32.4
Oeu058143.1 Olea europaea HOM05D003127 ORTHO05D003709 1.3e-19 100.9 179 33.0
Peaxi162Scf00029g00015 Petunia axillaris HOM05D003127 ORTHO05D003709 1.3e-19 100.9 179 32.4
Solyc01g007740.4 Solanum lycopersicum HOM05D003127 ORTHO05D003709 1.7e-19 100.5 179 32.4
PGSC0003DMG400016387 Solanum tuberosum HOM05D003127 ORTHO05D003709 1.7e-19 100.5 179 32.4
SGA_v2.0_scaffold35G14000 Striga asiatica HOM05D003127 ORTHO05D003709 1.7e-19 100.5 179 32.4
vmacro07464 Vaccinium macrocarpon HOM05D003127 ORTHO05D003709 1.7e-19 100.5 179 32.4
MSTRG.5906 Avicennia marina HOM05D003127 ORTHO05D003709 2.2e-19 100.1 179 32.4
Nitab4.5_0010740g0010 Nicotiana tabacum HOM05D003127 ORTHO05D003709 2.2e-19 100.1 179 32.4
Hund03845 Selenicereus undatus HOM05D003127 ORTHO05D003709 2.2e-19 100.1 179 33.0
SGA_v2.0_scaffold184G40031 Striga asiatica HOM05D003127 ORTHO05D003709 2.2e-19 100.1 179 31.8
MSTRG.19317 Avicennia marina HOM05D003127 ORTHO05D003709 2.8e-19 99.8 179 32.4
Ciclev10012459m.g Citrus clementina HOM05D003127 ORTHO05D003709 2.8e-19 99.8 182 33.5
THA.LOC104826809 Tarenaya hassleriana HOM05D003127 ORTHO05D003709 3.7e-19 99.4 179 31.8
EL10Ac7g16812 Beta vulgaris HOM05D003127 ORTHO05D003709 4.8e-19 99.0 179 32.4
Manes.08G031800 Manihot esculenta HOM05D003127 ORTHO05D003709 4.8e-19 99.0 179 31.8
Sc20g0006650 Simmondsia chinensis HOM05D003127 ORTHO05D003709 4.8e-19 99.0 182 33.5
Solyc10g082030.2 Solanum lycopersicum HOM05D003127 ORTHO05D003709 4.8e-19 99.0 179 31.8
Sopen10g032540 Solanum pennellii HOM05D003127 ORTHO05D003709 4.8e-19 99.0 179 31.8
PGSC0003DMG400028238 Solanum tuberosum HOM05D003127 ORTHO05D003709 4.8e-19 99.0 179 31.8
Ah.15g090500 Amaranthus hybridus HOM05D003127 ORTHO05D003709 6.3e-19 98.6 182 33.0
MCO10G030 Micromonas commoda HOM05D003127 ORTHO05D003709 6.3e-19 98.6 191 32.5
CAN.G1245.19 Capsicum annuum HOM05D003127 ORTHO05D003709 8.3e-19 98.2 182 33.0
DCAR_016922 Daucus carota HOM05D003127 ORTHO05D003709 1.1e-18 97.8 191 31.4
HPP92_025141 Vanilla planifolia HOM05D003127 ORTHO05D003709 1.1e-18 97.8 179 31.8
AUR62037040 Chenopodium quinoa HOM05D003127 ORTHO05D003709 1.4e-18 97.4 179 31.8
Cpa.g.sc104.57 Carica papaya HOM05D003127 ORTHO05D003709 1.8e-18 97.1 182 32.4
AUR62006270 Chenopodium quinoa HOM05D003127 ORTHO05D003709 1.8e-18 97.1 179 31.8
DCAR_013432 Daucus carota HOM05D003127 ORTHO05D003709 2.4e-18 96.7 191 31.4
HanXRQChr02g0053771 Helianthus annuus HOM05D003127 ORTHO05D003709 2.4e-18 96.7 182 32.4
CBR_g34275 Chara braunii HOM05D003127 ORTHO05D003709 3.1e-18 96.3 179 31.3
Gorai.002G157500 Gossypium raimondii HOM05D005985 ORTHO05D007403 3.1e-18 96.3 75 62.7
HanXRQChr13g0398251 Helianthus annuus HOM05D003127 ORTHO05D003709 3.1e-18 96.3 182 32.4
Lsat_1_v5_gn_6_35061 Lactuca sativa HOM05D003127 ORTHO05D003709 4.1e-18 95.9 179 31.3
Oeu044715.1 Olea europaea HOM05D003127 ORTHO05D003709 4.1e-18 95.9 179 30.7
THA.LOC104809959 Tarenaya hassleriana HOM05D003127 ORTHO05D003709 4.1e-18 95.9 179 30.7
Eucgr.K02606 Eucalyptus grandis HOM05D003127 ORTHO05D003709 7.0e-18 95.1 179 31.3
Aa31LG3G5040 Aethionema arabicum HOM05D003127 ORTHO05D003709 9.1e-18 94.7 179 31.3
Atru.chr8.1389 Acer truncatum HOM05D003127 ORTHO05D003709 1.2e-17 94.4 191 29.8
Cc03_g00310 Coffea canephora HOM05D005985 ORTHO05D007403 4.7e-14 82.4 59 69.5
Glyma.19G198200 Glycine max HOM05D003127 ORTHO05D003709 1.8e-10 70.5 157 28.7
BcaC01g01496 Brassica carinata HOM05D005985 ORTHO05D007403 1.9e-07 60.5 75 42.7
Lalb_Chr13g0293491 Lupinus albus HOM05D005985 ORTHO05D007403 1.2e-06 57.8 40 65.0
Lalb_Chr13g0293501 Lupinus albus HOM05D005985 ORTHO05D007403 1.6e-06 57.4 47 59.6
CANSAT56G1179 Cannabis sativa HOM05D004597 ORTHO05D005629 8.0e-06 55.1 155 23.9


User provided reference genes

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