Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 2.0e-153 545.8 299 100.0
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 3.2e-74 282.7 299 62.5
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 5.2e-72 275.4 303 55.8
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 7.7e-60 235.0 304 46.7
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 9.1e-53 211.5 278 47.8
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.0e-48 196.1 279 45.9
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 9.2e-45 184.9 272 52.2
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.0e-43 181.4 264 45.5
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.3e-43 180.3 293 40.6
SalBow1G6706 Salvia bowleyana HOM05D004244 ORTHO05D004964 8.6e-43 178.3 254 48.4
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 4.3e-42 176.0 296 39.5
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.0e-40 171.4 268 39.9
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 3.4e-39 166.4 285 40.7
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 1.3e-38 164.5 308 38.3
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 3.7e-38 162.9 269 40.1
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 2.4e-37 160.2 268 42.2
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 9.2e-37 158.3 268 39.6
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 7.8e-36 155.2 320 43.4
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.2e-33 147.9 189 46.0
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 1.8e-32 144.1 260 40.0
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 4.0e-32 142.9 266 38.3
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 3.7e-30 136.3 253 45.5
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 3.2e-29 133.3 257 35.8
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 3.2e-29 133.3 260 45.8
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 5.4e-29 132.5 259 37.5
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 5.4e-29 132.5 302 36.1
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 9.2e-29 131.7 240 35.4
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 3.5e-28 129.8 211 38.9
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 4.6e-28 129.4 241 39.8
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 7.8e-28 128.6 221 37.1
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 7.8e-28 128.6 221 37.1
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.3e-27 127.9 211 37.9
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 1.7e-27 127.5 231 37.7
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 5.1e-27 125.9 296 33.4
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 8.6e-27 125.2 193 42.0
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 8.6e-27 125.2 171 43.9
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 1.1e-26 124.8 254 42.9
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 2.5e-26 123.6 198 38.4
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 2.5e-26 123.6 195 38.5
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 5.6e-26 122.5 262 33.6
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 7.3e-26 122.1 277 35.7
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 7.3e-26 122.1 212 36.8
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 9.5e-26 121.7 239 35.6
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 2.1e-25 120.6 265 34.0
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 2.1e-25 120.6 195 37.4
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 3.6e-25 119.8 201 37.3
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 4.7e-25 119.4 303 33.7
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 8.1e-25 118.6 263 35.7
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.1e-24 118.2 265 33.6
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 1.4e-24 117.9 203 44.3
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 1.4e-24 117.9 206 36.9
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.4e-24 117.9 253 34.8
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 3.1e-24 116.7 177 40.7
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 6.8e-24 115.5 276 36.6
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 6.8e-24 115.5 254 33.5
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 8.9e-24 115.2 252 33.7
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 8.9e-24 115.2 299 34.4
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 8.9e-24 115.2 246 33.3
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 1.5e-23 114.4 288 29.2
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 2.0e-23 114.0 201 35.8
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 2.0e-23 114.0 183 39.9
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 2.0e-23 114.0 264 34.8
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 4.4e-23 112.8 209 35.4
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 5.8e-23 112.5 225 40.9
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 5.8e-23 112.5 201 35.8
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 9.9e-23 111.7 266 32.3
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.3e-22 111.3 171 42.1
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 3.7e-22 109.8 194 36.1
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 4.9e-22 109.4 240 32.5
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 4.9e-22 109.4 194 40.2
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 8.3e-22 108.6 278 34.2
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 8.3e-22 108.6 254 31.9
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.4e-21 107.8 287 30.7
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 1.9e-21 107.5 275 32.0
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 3.2e-21 106.7 203 36.9
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 4.1e-21 106.3 179 39.1
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 9.2e-21 105.1 265 36.6
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 1.2e-20 104.8 180 36.7
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 1.6e-20 104.4 276 32.2
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 2.7e-20 103.6 206 35.4
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 4.6e-20 102.8 193 41.5
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 6.0e-20 102.4 197 33.5
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.7e-19 100.9 263 32.3
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.7e-19 100.9 233 34.8
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 2.3e-19 100.5 179 35.8
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 5.1e-19 99.4 201 41.3
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 6.6e-19 99.0 186 37.6
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 1.5e-18 97.8 190 40.0
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.9e-18 97.4 264 30.7
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.5e-18 97.1 264 31.1
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 2.5e-18 97.1 200 45.0
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 3.3e-18 96.7 264 31.1
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 5.6e-18 95.9 165 39.4
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 9.5e-18 95.1 187 40.1
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 2.8e-17 93.6 192 31.8
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 2.4e-16 90.5 183 35.5
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 4.0e-16 89.7 229 28.4
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 4.0e-16 89.7 201 31.3
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 4.0e-16 89.7 231 33.3
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 1.5e-15 87.8 219 37.4
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 5.8e-15 85.9 186 34.4
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 5.8e-15 85.9 206 32.0
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 5.8e-15 85.9 300 29.0
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.3e-14 84.7 210 33.3
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.2e-14 84.0 182 34.1
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.2e-14 84.0 221 27.1
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.2e-14 84.0 221 27.1
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.9e-14 83.6 242 27.3
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 4.9e-14 82.8 202 32.7
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 6.4e-14 82.4 205 32.7
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 1.1e-13 81.6 179 33.0
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 1.1e-13 81.6 209 29.7
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.4e-13 81.3 242 26.9
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 7.1e-13 79.0 224 28.1
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 7.1e-13 79.0 186 34.4
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 7.1e-13 79.0 248 27.8
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 3.0e-11 73.6 181 29.3
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 6.6e-11 72.4 211 28.0
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 1.1e-10 71.6 181 32.6
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.5e-10 71.2 175 43.4
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 1.5e-10 71.2 169 42.0
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 1.9e-10 70.9 181 30.9
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 2.5e-10 70.5 198 33.3
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 3.3e-10 70.1 75 44.0
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 3.3e-10 70.1 249 27.3
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 5.6e-10 69.3 131 38.2
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 5.6e-10 69.3 151 40.4
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 5.6e-10 69.3 180 28.9
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 7.3e-10 68.9 200 27.0
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 9.6e-10 68.6 181 31.5
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 9.6e-10 68.6 181 31.5
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 9.6e-10 68.6 181 31.5
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 1.3e-09 68.2 256 27.0
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 6.2e-09 65.9 228 25.9
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 1.1e-08 65.1 181 30.4
Sopen04g018350 Solanum pennellii HOM05D004244 ORTHO05D004964 1.4e-08 64.7 51 60.8
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.8e-08 64.3 189 29.6
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 2.4e-08 63.9 221 25.8
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 3.1e-08 63.5 263 27.8
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 4.0e-08 63.2 173 26.6
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 4.0e-08 63.2 149 42.3
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 6.9e-08 62.4 191 26.2
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 3.4e-07 60.1 56 44.6
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 4.4e-07 59.7 165 27.3
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 7.6e-07 58.9 177 33.3
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 9.9e-07 58.5 152 32.2
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 9.9e-07 58.5 223 25.6
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 4.9e-06 56.2 208 26.0
Zm00001eb156930 Zea mays HOM05D004244 ORTHO05D004964 4.9e-06 56.2 147 32.7
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 8.4e-06 55.5 212 25.9


User provided reference genes

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