Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.3e-166 589.7 304 100.0
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 1.7e-131 473.0 311 78.5
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.9e-130 469.5 311 78.8
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 9.4e-130 467.2 311 76.8
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 8.0e-129 464.2 296 82.4
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 2.4e-125 452.6 297 75.8
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 3.1e-125 452.2 301 75.1
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 5.3e-125 451.4 310 75.5
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 2.0e-124 449.5 301 74.8
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 2.6e-124 449.1 312 75.3
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 4.5e-124 448.4 301 74.4
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.0e-123 447.2 309 73.8
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 2.9e-123 445.7 305 72.8
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 5.0e-123 444.9 311 73.3
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 3.2e-122 442.2 310 74.5
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 5.5e-122 441.4 310 72.3
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 9.4e-122 440.7 310 74.8
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 9.4e-122 440.7 310 71.9
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 4.7e-121 438.3 311 72.3
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 6.1e-121 438.0 311 72.3
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 8.0e-121 437.6 311 72.3
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 8.0e-121 437.6 310 71.6
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 8.0e-121 437.6 299 76.6
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 1.4e-120 436.8 310 72.9
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.8e-120 436.4 298 77.2
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.8e-120 436.4 299 76.3
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.3e-120 436.0 297 75.8
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 3.0e-120 435.6 297 74.1
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 5.2e-120 434.9 311 72.7
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 8.8e-120 434.1 310 71.9
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.0e-119 433.0 296 73.0
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 3.4e-119 432.2 298 73.8
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.4e-119 432.2 304 73.0
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.4e-119 432.2 305 73.4
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.4e-119 432.2 310 71.6
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 4.4e-119 431.8 310 71.0
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.5e-119 431.0 304 72.7
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.2e-118 429.5 295 73.9
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 2.8e-118 429.1 308 71.4
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 2.8e-118 429.1 304 71.4
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 4.8e-118 428.3 311 71.4
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 1.1e-117 427.2 285 76.5
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.8e-117 426.4 302 74.8
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 1.8e-117 426.4 267 77.9
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.8e-117 426.4 311 70.1
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 3.1e-117 425.6 309 70.2
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.0e-116 422.9 310 71.3
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.0e-116 422.9 310 71.3
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 1.0e-115 420.6 310 70.6
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.7e-115 419.9 297 72.4
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.8e-115 418.7 310 70.6
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 8.5e-115 417.5 310 71.6
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.5e-114 416.8 308 69.5
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.5e-114 416.8 313 69.0
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.9e-114 416.4 294 71.8
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 5.5e-114 414.8 309 69.6
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 5.5e-114 414.8 314 70.1
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 7.2e-114 414.5 308 69.5
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 9.4e-114 414.1 291 71.8
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 9.4e-114 414.1 303 71.0
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 9.4e-114 414.1 307 68.4
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 9.4e-114 414.1 313 70.3
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 1.2e-113 413.7 345 65.5
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 8.0e-113 411.0 291 70.1
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 8.0e-113 411.0 292 70.9
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-112 410.2 291 69.8
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.4e-112 410.2 314 67.8
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.8e-112 409.8 336 66.4
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 6.8e-112 407.9 310 66.8
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 6.8e-112 407.9 314 68.8
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 1.2e-111 407.1 311 68.8
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.5e-111 406.8 314 68.2
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 2.6e-111 406.0 310 68.1
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.6e-111 406.0 308 68.5
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 3.4e-111 405.6 305 68.9
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 4.4e-111 405.2 310 67.4
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.3e-110 403.7 305 67.9
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.7e-110 403.3 296 69.6
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 2.2e-110 402.9 302 68.2
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 2.2e-110 402.9 297 68.7
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 3.7e-110 402.1 310 66.8
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 3.7e-110 402.1 358 61.5
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 4.8e-110 401.7 296 68.6
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 4.8e-110 401.7 316 66.5
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 6.3e-110 401.4 310 67.1
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 6.3e-110 401.4 318 66.4
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 8.3e-110 401.0 310 66.5
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 8.3e-110 401.0 313 66.8
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 8.3e-110 401.0 316 66.8
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.8e-109 399.8 310 66.8
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 2.4e-109 399.4 305 69.8
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 3.1e-109 399.1 310 66.5
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 3.1e-109 399.1 310 66.1
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.1e-109 399.1 311 66.2
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 4.1e-109 398.7 310 66.5
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 5.4e-109 398.3 293 67.9
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 7.0e-109 397.9 305 67.2
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 2.0e-108 396.4 296 67.2
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 2.0e-108 396.4 310 66.1
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.7e-108 396.0 311 67.8
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 5.9e-108 394.8 311 66.6
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 5.9e-108 394.8 316 65.8
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.3e-107 393.7 289 69.9
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 2.3e-107 392.9 301 67.8
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 2.9e-107 392.5 291 67.4
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 3.8e-107 392.1 312 66.7
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 6.6e-107 391.3 385 56.6
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 2.5e-106 389.4 310 63.5
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 3.3e-106 389.0 276 71.4
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 7.2e-106 387.9 315 64.8
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.1e-105 386.3 259 76.4
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.1e-105 386.3 301 65.4
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 8.0e-105 384.4 295 67.1
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 2.3e-104 382.9 300 66.0
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 6.8e-104 381.3 310 64.2
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.5e-103 380.2 263 73.0
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.4e-103 378.6 295 67.1
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 1.1e-101 374.0 348 58.9
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.8e-101 373.2 304 62.5
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 9.2e-101 370.9 233 79.4
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.6e-100 370.2 257 71.2
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.6e-99 364.4 275 64.0
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.5e-98 362.8 276 65.2
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 5.6e-98 361.7 295 62.0
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 2.8e-97 359.4 308 61.0
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 1.4e-96 357.1 307 63.2
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 4.0e-96 355.5 304 60.9
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 9.2e-93 344.4 303 60.1
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 3.6e-89 332.4 276 56.9
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 2.4e-85 319.7 300 58.3
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 7.8e-84 314.7 295 52.5
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 5.2e-80 302.0 296 52.4
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 5.2e-80 302.0 301 58.5
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 3.4e-79 299.3 278 57.9
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 5.8e-79 298.5 295 53.9
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.1e-77 291.6 230 67.4
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 7.8e-76 288.1 291 52.6
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.3e-75 287.3 275 52.0
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.3e-75 287.3 304 51.0
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 9.6e-74 281.2 274 56.6
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 8.1e-73 278.1 282 50.4
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.8e-72 276.9 282 50.0
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 9.9e-71 271.2 247 56.7
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.1e-64 251.1 198 64.1
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.4e-64 250.0 236 53.0
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 7.9e-60 235.0 148 77.7
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 3.3e-58 229.6 193 64.2
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 3.1e-56 223.0 209 57.4
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 3.1e-56 223.0 220 52.3
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 3.1e-56 223.0 183 64.5
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.0e-55 220.3 324 46.9
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.3e-54 217.6 189 60.8
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 3.5e-52 209.5 152 73.7
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.0e-51 208.0 210 51.9
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 9.0e-48 194.9 149 65.8
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.1e-45 188.0 292 37.3
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 7.7e-31 138.7 108 68.5
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 1.3e-30 137.9 287 29.6
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 2.1e-28 130.6 329 29.2
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 4.1e-24 116.3 223 31.8
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.2e-23 114.8 78 76.9
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 8.5e-22 108.6 114 52.6
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 4.2e-21 106.3 123 48.8
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 2.7e-20 103.6 295 27.1
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 8.2e-17 92.0 299 28.8
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 9.1e-08 62.0 55 49.1
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 3.5e-07 60.1 40 70.0
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 5.0e-06 56.2 35 74.3


User provided reference genes

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