Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 3.1e-39 164.9 95 100.0
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 5.5e-28 127.5 92 71.7
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 5.5e-20 100.9 56 89.3
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 7.2e-20 100.5 92 62.0
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 7.2e-20 100.5 81 66.7
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 1.2e-19 99.8 56 83.9
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 2.1e-19 99.0 56 83.9
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 2.7e-19 98.6 56 87.5
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 3.6e-19 98.2 56 83.9
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 1.0e-18 96.7 56 80.4
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.4e-18 96.3 56 82.1
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 1.8e-18 95.9 56 82.1
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 2.3e-18 95.5 56 82.1
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 3.0e-18 95.1 56 80.4
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 5.2e-18 94.4 58 81.0
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 3.4e-17 91.7 56 76.8
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 3.4e-17 91.7 56 76.8
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 5.7e-17 90.9 55 81.8
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 9.8e-17 90.1 55 74.5
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 2.2e-16 89.0 59 74.6
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 2.8e-16 88.6 55 76.4
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 2.8e-16 88.6 55 76.4
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 4.8e-16 87.8 53 77.4
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 6.3e-16 87.4 60 76.7
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 6.3e-16 87.4 60 76.7
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 6.3e-16 87.4 60 76.7
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 6.3e-16 87.4 56 73.2
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 1.1e-15 86.7 57 77.2
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 1.4e-15 86.3 57 77.2
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 1.4e-15 86.3 56 73.2
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 1.4e-15 86.3 57 75.4
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 1.8e-15 85.9 60 71.7
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 1.8e-15 85.9 59 72.9
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 3.1e-15 85.1 54 70.4
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 3.1e-15 85.1 54 70.4
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 3.1e-15 85.1 54 70.4
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 4.1e-15 84.7 56 71.4
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 5.4e-15 84.3 56 69.6
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 5.4e-15 84.3 55 74.5
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 5.4e-15 84.3 53 77.4
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 7.0e-15 84.0 55 78.2
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 7.0e-15 84.0 55 76.4
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 9.1e-15 83.6 56 75.0
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 9.1e-15 83.6 56 75.0
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 9.1e-15 83.6 56 75.0
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 9.1e-15 83.6 58 72.4
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 1.2e-14 83.2 55 74.5
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 1.2e-14 83.2 55 74.5
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 1.2e-14 83.2 55 74.5
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.2e-14 83.2 56 75.0
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 1.6e-14 82.8 55 74.5
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 1.6e-14 82.8 53 73.6
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 1.6e-14 82.8 57 70.2
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 1.6e-14 82.8 56 75.0
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 2.0e-14 82.4 52 76.9
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 2.0e-14 82.4 56 75.0
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 2.7e-14 82.0 55 74.5
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 2.7e-14 82.0 55 74.5
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 2.7e-14 82.0 54 75.9
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 4.5e-14 81.3 55 76.4
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 7.7e-14 80.5 53 71.7
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 7.7e-14 80.5 55 74.5
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 1.0e-13 80.1 56 66.1
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 1.3e-13 79.7 56 66.1
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 1.3e-13 79.7 53 69.8
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 2.3e-13 79.0 55 70.9
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 2.3e-13 79.0 54 68.5
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 2.3e-13 79.0 56 66.1
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 2.9e-13 78.6 55 70.9
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 2.9e-13 78.6 55 69.1
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 3.8e-13 78.2 55 70.9
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 3.8e-13 78.2 55 70.9
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 3.8e-13 78.2 55 70.9
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 3.8e-13 78.2 55 70.9
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 6.5e-13 77.4 52 71.2
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 8.6e-13 77.0 55 70.9
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 1.1e-12 76.6 55 65.5
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 1.5e-12 76.3 53 69.8
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 1.5e-12 76.3 56 66.1
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 3.2e-12 75.1 50 74.0
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 9.5e-12 73.6 50 72.0
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 1.2e-11 73.2 49 69.4
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 1.2e-11 73.2 49 69.4
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 1.6e-11 72.8 49 69.4
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 2.1e-11 72.4 50 68.0
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 4.7e-11 71.2 49 67.3
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 8.0e-11 70.5 55 60.0
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 3.0e-10 68.6 54 61.1
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 3.4e-09 65.1 50 66.0
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 7.5e-09 63.9 39 84.6
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 2.8e-08 62.0 37 89.2
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.1e-07 60.1 51 58.8
Mapoly0109s0063 Marchantia polymorpha HOM05D007503 ORTHO05D009487 4.1e-07 58.2 40 75.0
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 5.4e-07 57.8 44 61.4
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 5.4e-07 57.8 44 61.4
arahy.Tifrunner.gnm1.ann1.CKCH2H Arachis hypogaea HOM05D007503 ORTHO05D009487 2.7e-06 55.5 49 53.1
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 2.7e-06 55.5 37 75.7
arahy.Tifrunner.gnm1.ann1.17W1X2 Arachis hypogaea HOM05D007503 ORTHO05D009487 3.5e-06 55.1 52 51.9
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 3.5e-06 55.1 37 73.0
PGSC0003DMG400000976 Solanum tuberosum HOM05D007503 ORTHO05D009487 7.8e-06 53.9 37 75.7


User provided reference genes

Program Settings