Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01779 Erythranthe guttata HOM05D007562 ORTHO05D009721 0.0e+00 1103.2 600 100.0
Oeu043937.1 Olea europaea HOM05D007562 ORTHO05D009721 1.3e-111 407.9 844 37.1
SGA_v2.0_scaffold71G24023 Striga asiatica HOM05D007562 ORTHO05D009721 3.0e-103 380.2 723 39.0
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 2.6e-75 287.3 823 32.0
Peaxi162Scf00072g00627 Petunia axillaris HOM05D007562 ORTHO05D009721 4.6e-72 276.6 833 30.5
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 6.7e-71 272.7 756 32.5
SalBow3G0440 Salvia bowleyana HOM05D007562 ORTHO05D009721 4.5e-67 260.0 852 30.9
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 7.9e-64 249.2 893 28.6
Solyc04g049440.2 Solanum lycopersicum HOM05D007562 ORTHO05D009721 7.7e-59 232.6 822 29.1
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 1.5e-57 228.4 652 32.2
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 1.8e-55 221.5 662 31.4
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 8.8e-55 219.2 730 30.7
CSS0037048 Camellia sinensis var. sinensis HOM05D007562 ORTHO05D009721 1.2e-46 192.2 882 26.4
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 5.7e-46 189.9 749 27.0
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 8.0e-40 169.5 373 34.9
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.3e-39 167.9 893 24.3
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 4.4e-38 163.7 663 29.3
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 6.3e-37 159.8 368 34.0
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 4.2e-33 147.1 315 32.7
Cc09_g02120 Coffea canephora HOM05D007562 ORTHO05D009721 7.2e-33 146.4 213 46.5
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 7.2e-33 146.4 356 31.5
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 9.5e-33 146.0 890 23.7
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 6.1e-32 143.3 356 31.7
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 1.0e-31 142.5 318 35.2
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 4.0e-31 140.6 341 32.6
Psat1g112000 Pisum sativum HOM05D007562 ORTHO05D009721 6.8e-31 139.8 466 29.2
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 9.8e-30 136.0 356 30.6
Medtr6g060178 Medicago truncatula HOM05D007562 ORTHO05D009721 2.2e-29 134.8 622 28.5
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 6.3e-29 133.3 603 25.9
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 3.5e-27 127.5 224 41.1
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 1.7e-26 125.2 327 30.3
Nn4g24611 Nelumbo nucifera HOM05D007562 ORTHO05D009721 3.9e-26 124.0 242 38.0
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 6.6e-26 123.2 356 31.2
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 8.6e-26 122.9 341 31.1
Ciclev10033702m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.1e-25 122.5 475 27.4
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 1.9e-25 121.7 359 27.9
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 1.2e-24 119.0 317 30.9
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 1.2e-24 119.0 382 29.8
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 4.7e-24 117.1 641 25.1
Thhalv10015291m.g Eutrema salsugineum HOM05D007562 ORTHO05D009721 4.7e-24 117.1 667 25.3
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 1.0e-23 115.9 359 30.1
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 1.8e-23 115.2 323 30.7
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 1.5e-22 112.1 316 27.8
C02p07440 Brassica napus HOM05D007562 ORTHO05D009721 2.0e-22 111.7 666 23.7
Carub.0006s1315 Capsella rubella HOM05D007562 ORTHO05D009721 2.0e-22 111.7 644 24.5
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 4.4e-22 110.5 736 23.9
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 4.4e-22 110.5 221 36.2
Cc09_g02140 Coffea canephora HOM05D007562 ORTHO05D009721 5.8e-22 110.2 189 44.4
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 9.8e-22 109.4 869 23.4
AL6G25790 Arabidopsis lyrata HOM05D007562 ORTHO05D009721 9.8e-22 109.4 605 24.8
Eucgr.G02827 Eucalyptus grandis HOM05D007562 ORTHO05D009721 1.3e-21 109.0 254 34.6
Ciclev10033649m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.7e-21 108.6 624 24.7
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 3.7e-21 107.5 356 27.8
DCAR_004783 Daucus carota HOM05D007562 ORTHO05D009721 6.4e-21 106.7 219 36.5
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 6.4e-21 106.7 322 28.3
Ciclev10033616m.g Citrus clementina HOM05D007562 ORTHO05D009721 8.3e-21 106.3 660 22.9
Cpa.g.sc53.80 Carica papaya HOM05D007562 ORTHO05D009721 1.1e-20 105.9 254 33.5
Manes.07G100520 Manihot esculenta HOM05D007562 ORTHO05D009721 1.1e-20 105.9 217 35.9
FAN06G4675 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.9e-20 105.1 403 27.0
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 2.4e-20 104.8 262 32.8
TWI63G1657 Tripterygium wilfordii HOM05D007562 ORTHO05D009721 3.2e-20 104.4 221 35.3
BolC2t06675H Brassica oleracea HOM05D000286 ORTHO05D009721 4.1e-20 104.0 625 24.3
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 9.2e-20 102.8 638 24.6
MELO3C012431.2 Cucumis melo HOM05D007562 ORTHO05D009721 1.6e-19 102.1 591 24.4
BcaC03g13438 Brassica carinata HOM05D007562 ORTHO05D009721 2.0e-19 101.7 662 24.2
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 2.0e-19 101.7 230 34.3
COL.COLO4_23667 Corchorus olitorius HOM05D007562 ORTHO05D009721 3.5e-19 100.9 227 35.2
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.0e-18 99.4 348 26.4
Ciclev10033636m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.7e-18 98.6 249 32.5
Sp6g29050 Schrenkiella parvula HOM05D007562 ORTHO05D009721 3.0e-18 97.8 248 34.7
BraA02t05255Z Brassica rapa HOM05D007562 ORTHO05D009721 2.1e-16 91.7 778 22.6
CsaV3_5G036330 Cucumis sativus L. HOM05D007562 ORTHO05D009721 2.8e-16 91.3 227 33.5
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.8e-15 88.6 328 28.7
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 2.3e-15 88.2 291 28.5
AT5G14990 Arabidopsis thaliana HOM05D007562 ORTHO05D009721 3.1e-15 87.8 248 32.3
Sed0018277 Sechium edule HOM05D007562 ORTHO05D009721 3.1e-15 87.8 243 30.9
A02p02820 Brassica napus HOM05D007562 ORTHO05D009721 5.2e-15 87.0 775 21.9
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 1.2e-14 85.9 221 31.7
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 3.7e-13 80.9 398 24.6
ECA233G5285 Erigeron canadensis HOM05D007562 ORTHO05D009721 6.4e-13 80.1 310 25.5
PSO339G1903 Papaver somniferum HOM05D007562 ORTHO05D009721 8.3e-13 79.7 232 30.2
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.4e-12 79.0 189 33.3
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 1.9e-12 78.6 362 23.8
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 9.2e-12 76.3 585 23.1
Lsat_1_v5_gn_8_19320 Lactuca sativa HOM05D007562 ORTHO05D009721 2.1e-11 75.1 255 22.7
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 2.7e-11 74.7 365 24.1
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 4.6e-11 73.9 322 24.8
Manes.07G100522 Manihot esculenta HOM05D007562 ORTHO05D004736 2.3e-10 71.6 64 57.8
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 3.0e-10 71.2 587 22.8
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 3.0e-10 71.2 214 29.0
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 3.9e-10 70.9 356 23.3
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 1.1e-09 69.3 641 21.4
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 1.5e-09 68.9 334 24.9
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 1.9e-09 68.6 672 22.2
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 1.9e-09 68.6 363 24.0
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 2.5e-09 68.2 383 24.5
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 2.5e-09 68.2 572 23.4
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 3.3e-09 67.8 319 24.1
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 3.3e-09 67.8 319 24.1
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 3.3e-09 67.8 164 30.5
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 3.3e-09 67.8 93 40.9
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 3.3e-09 67.8 320 23.1
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 3.3e-09 67.8 466 23.2
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 5.6e-09 67.0 397 22.9
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 5.6e-09 67.0 139 35.3
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 5.6e-09 67.0 578 21.5
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 7.3e-09 66.6 237 24.9
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 7.3e-09 66.6 360 23.1
Cpa.g.sc53.79 Carica papaya HOM05D007562 ORTHO05D009721 9.5e-09 66.2 145 33.8
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 9.5e-09 66.2 569 21.4
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 9.5e-09 66.2 383 22.5
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 1.2e-08 65.9 194 28.4
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.2e-08 65.9 167 29.9
Ciclev10034000m.g Citrus clementina HOM05D007562 ORTHO05D004736 1.2e-08 65.9 70 47.1
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 1.2e-08 65.9 362 22.7
Sed0017940 Sechium edule HOM05D007562 ORTHO05D009721 1.6e-08 65.5 89 40.4
Aa31LG11G14520 Aethionema arabicum HOM05D007562 ORTHO05D009721 2.1e-08 65.1 247 25.9
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 2.1e-08 65.1 374 23.8
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 2.8e-08 64.7 374 22.5
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 3.6e-08 64.3 358 23.7
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 3.6e-08 64.3 426 20.9
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 3.6e-08 64.3 242 26.4
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 4.7e-08 63.9 228 25.0
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 4.7e-08 63.9 362 22.9
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 4.7e-08 63.9 123 31.7
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 6.2e-08 63.5 367 21.5
CDE08G0023 Ceratophyllum demersum HOM05D007562 ORTHO05D009721 6.2e-08 63.5 233 26.2
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 6.2e-08 63.5 423 23.6
CsaV3_5G036320 Cucumis sativus L. HOM05D007562 ORTHO05D009721 8.1e-08 63.2 92 38.0
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 8.1e-08 63.2 369 23.8
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 1.1e-07 62.8 181 27.6
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.1e-07 62.8 218 26.6
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 1.1e-07 62.8 568 22.0
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 1.8e-07 62.0 360 24.7
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.8e-07 62.0 208 27.9
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 2.3e-07 61.6 641 21.5
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 2.3e-07 61.6 111 35.1
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 3.1e-07 61.2 654 19.6
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 3.1e-07 61.2 230 27.4
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 3.1e-07 61.2 366 21.6
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 3.1e-07 61.2 131 31.3
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 4.0e-07 60.8 576 21.7
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 5.2e-07 60.5 310 25.2
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 5.2e-07 60.5 369 26.0
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 5.2e-07 60.5 161 28.6
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 5.2e-07 60.5 603 20.9
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 5.2e-07 60.5 216 25.9
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 6.8e-07 60.1 227 28.6
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 6.8e-07 60.1 576 21.5
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 6.8e-07 60.1 146 25.3
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 6.8e-07 60.1 83 38.6
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 8.9e-07 59.7 361 24.1
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 8.9e-07 59.7 75 41.3
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 1.2e-06 59.3 214 25.2
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.2e-06 59.3 373 21.4
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 1.5e-06 58.9 314 27.1
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 1.5e-06 58.9 467 21.8
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 2.0e-06 58.5 128 35.2
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 2.0e-06 58.5 327 25.4
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 2.6e-06 58.2 384 24.5
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 2.6e-06 58.2 364 22.3
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 4.4e-06 57.4 370 22.2
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 5.8e-06 57.0 154 27.9
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 5.8e-06 57.0 219 31.1
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 5.8e-06 57.0 319 24.8
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 7.6e-06 56.6 619 21.3
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 7.6e-06 56.6 374 21.9
Dinv01743 Davidia involucrata HOM05D004088 ORTHO05D004736 7.6e-06 56.6 93 33.3
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 7.6e-06 56.6 123 32.5
Zm00001eb261820 Zea mays HOM05D004088 ORTHO05D004736 7.6e-06 56.6 607 19.9
Pp3c15_60 Physcomitrium patens HOM05D004088 ORTHO05D004736 9.9e-06 56.2 191 27.2


User provided reference genes

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