Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.7e-82 309.3 159 100.0
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 9.1e-60 233.8 150 76.7
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 3.0e-55 218.8 152 73.0
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 8.9e-55 217.2 150 70.7
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.2e-54 216.9 150 72.7
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.5e-54 216.5 152 73.7
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 2.6e-54 215.7 152 71.1
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 4.4e-54 214.9 152 71.7
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.9e-53 212.2 152 70.4
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.1e-52 210.3 144 70.1
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.8e-52 209.5 152 73.7
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 2.4e-52 209.1 152 71.7
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.0e-50 203.8 152 68.4
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.0e-50 203.8 152 68.4
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.9e-49 199.5 149 68.5
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.5e-49 199.1 149 68.5
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 3.3e-49 198.7 153 66.0
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 5.6e-49 198.0 152 67.1
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.1e-48 196.1 152 65.8
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.8e-48 195.7 152 67.1
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.7e-48 194.9 153 62.7
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 4.7e-48 194.9 152 68.4
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 4.7e-48 194.9 152 63.8
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 4.7e-48 194.9 152 65.8
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 4.7e-48 194.9 152 65.1
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 6.2e-48 194.5 152 67.1
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 8.0e-48 194.1 151 65.6
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.0e-47 193.7 152 66.4
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 1.4e-47 193.4 152 66.4
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.3e-47 192.6 152 65.1
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.3e-47 192.6 152 65.1
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 4.0e-47 191.8 152 65.1
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 5.2e-47 191.4 152 65.1
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 1.2e-46 190.3 152 64.5
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.0e-46 189.5 152 66.4
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 2.0e-46 189.5 152 65.1
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 2.6e-46 189.1 152 63.2
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 2.6e-46 189.1 153 64.1
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 2.6e-46 189.1 152 63.8
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 3.4e-46 188.7 152 64.5
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 3.4e-46 188.7 153 64.7
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 3.4e-46 188.7 152 65.8
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 3.4e-46 188.7 152 65.8
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 3.4e-46 188.7 151 60.9
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.4e-46 188.7 152 63.8
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 5.8e-46 188.0 152 64.5
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 7.5e-46 187.6 152 66.4
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.3e-45 186.8 142 64.1
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.3e-45 186.8 152 65.1
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.3e-45 186.8 150 62.0
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.3e-45 186.8 152 65.1
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 1.3e-45 186.8 141 66.0
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 1.7e-45 186.4 149 64.4
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.7e-45 186.4 153 63.4
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 2.2e-45 186.0 150 61.3
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.2e-45 186.0 149 63.8
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.2e-45 186.0 153 62.7
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.9e-45 185.7 152 61.8
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 3.7e-45 185.3 152 62.5
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.9e-45 184.9 153 62.7
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 4.9e-45 184.9 152 64.5
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 6.4e-45 184.5 152 62.5
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 6.4e-45 184.5 152 63.8
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 8.3e-45 184.1 150 60.7
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 8.3e-45 184.1 150 60.7
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 8.3e-45 184.1 149 63.1
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 8.3e-45 184.1 117 74.4
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.1e-44 183.7 152 63.2
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.9e-44 183.0 150 60.7
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 2.4e-44 182.6 152 61.2
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 2.4e-44 182.6 152 61.8
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 2.4e-44 182.6 158 62.0
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 3.2e-44 182.2 152 63.2
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 4.1e-44 181.8 151 58.9
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 7.0e-44 181.0 151 60.3
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 7.0e-44 181.0 116 73.3
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 7.0e-44 181.0 152 62.5
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 1.6e-43 179.9 135 63.7
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.7e-43 179.1 155 61.9
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 2.7e-43 179.1 153 61.4
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.7e-43 179.1 153 58.8
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 4.6e-43 178.3 156 61.5
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 4.6e-43 178.3 150 59.3
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 4.6e-43 178.3 153 62.1
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 7.8e-43 177.6 154 60.4
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.0e-42 177.2 144 62.5
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 1.0e-42 177.2 152 61.2
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.0e-42 177.2 154 63.6
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.3e-42 176.8 152 62.5
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.3e-42 176.8 135 65.2
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.3e-42 176.8 135 64.4
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 3.0e-42 175.6 150 58.7
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 3.0e-42 175.6 144 61.8
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 3.0e-42 175.6 144 61.8
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 3.9e-42 175.3 152 59.9
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 3.9e-42 175.3 162 59.3
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 5.0e-42 174.9 152 59.9
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 5.0e-42 174.9 153 59.5
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 5.0e-42 174.9 153 61.4
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 5.0e-42 174.9 153 59.5
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 6.6e-42 174.5 150 58.0
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 6.6e-42 174.5 159 58.5
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 6.6e-42 174.5 150 58.0
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 8.6e-42 174.1 138 63.0
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 8.6e-42 174.1 159 59.1
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 8.6e-42 174.1 139 61.9
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 1.1e-41 173.7 159 57.2
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.1e-41 173.7 152 61.2
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.5e-41 173.3 156 58.3
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.5e-41 173.3 158 55.1
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.9e-41 172.9 152 58.6
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 1.9e-41 172.9 157 60.5
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 2.5e-41 172.6 159 57.2
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 3.3e-41 172.2 131 67.9
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 4.3e-41 171.8 137 63.5
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 4.3e-41 171.8 187 51.3
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 4.3e-41 171.8 152 59.2
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 9.5e-41 170.6 150 57.3
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.6e-40 169.9 143 61.5
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 2.8e-40 169.1 159 56.6
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 3.6e-40 168.7 163 54.6
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 4.7e-40 168.3 159 56.0
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.1e-39 167.2 152 59.2
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.1e-39 167.2 152 57.9
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.4e-39 166.8 151 58.3
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.0e-39 165.2 151 57.6
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 8.9e-39 164.1 151 57.0
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 2.0e-38 162.9 150 54.7
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.6e-38 162.5 144 55.6
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 5.8e-38 161.4 152 55.9
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 5.8e-38 161.4 152 58.6
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 8.3e-37 157.5 150 56.7
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 5.4e-36 154.8 146 55.5
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 2.1e-35 152.9 139 55.4
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 6.0e-35 151.4 155 52.3
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 3.0e-34 149.1 117 60.7
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 1.1e-33 147.1 142 54.9
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 2.5e-33 146.0 152 50.7
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 1.6e-32 143.3 135 57.8
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 2.3e-31 139.4 130 51.5
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 6.8e-31 137.9 117 55.6
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.0e-30 136.3 154 47.4
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.7e-29 133.3 152 48.0
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 1.7e-29 133.3 129 53.5
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 6.4e-29 131.3 135 54.8
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 8.4e-29 131.0 153 45.1
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 3.2e-28 129.0 84 69.0
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 2.1e-27 126.3 119 50.4
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 5.1e-26 121.7 134 47.8
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 8.6e-26 120.9 140 47.1
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.9e-25 119.8 140 46.4
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 3.1e-23 112.5 120 42.5
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.6e-19 100.1 92 47.8
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.5e-19 99.0 154 42.9
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 2.1e-16 89.7 68 60.3
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 2.4e-15 86.3 147 37.4
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 6.0e-11 71.6 141 33.3


User provided reference genes

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