Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 9.5e-69 263.5 140 100.0
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 2.7e-31 139.0 151 63.6
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 1.7e-25 119.8 136 54.4
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 1.3e-22 110.2 160 53.1
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 6.7e-22 107.8 100 67.0
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 1.9e-21 106.3 115 56.5
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 4.3e-21 105.1 165 47.3
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 5.6e-21 104.8 150 51.3
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 5.6e-21 104.8 137 53.3
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 8.1e-20 100.9 78 69.2
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 1.1e-19 100.5 72 76.4
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 1.4e-19 100.1 159 47.8
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 2.4e-19 99.4 155 50.3
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 3.1e-19 99.0 70 74.3
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 4.0e-19 98.6 155 47.7
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 4.0e-19 98.6 67 80.6
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 6.9e-19 97.8 127 50.4
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 6.9e-19 97.8 148 49.3
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 6.9e-19 97.8 148 49.3
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 1.2e-18 97.1 120 47.5
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 1.5e-18 96.7 131 49.6
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 2.0e-18 96.3 92 63.0
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 2.0e-18 96.3 93 62.4
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 2.0e-18 96.3 90 58.9
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 2.6e-18 95.9 119 52.1
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 5.8e-18 94.7 75 70.7
SGA_v2.0_scaffold10G05320 Striga asiatica HOM05D007680 ORTHO05D009702 5.8e-18 94.7 115 51.3
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 7.6e-18 94.4 161 46.6
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 1.0e-17 94.0 140 51.4
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 3.8e-17 92.0 74 60.8
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 4.9e-17 91.7 167 47.3
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 4.9e-17 91.7 160 46.9
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 6.5e-17 91.3 174 45.4
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 8.4e-17 90.9 146 50.0
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 8.4e-17 90.9 147 42.9
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 1.1e-16 90.5 85 64.7
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 1.4e-16 90.1 160 46.2
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 1.9e-16 89.7 149 48.3
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.9e-16 89.7 79 65.8
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 1.9e-16 89.7 165 46.1
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 2.5e-16 89.4 147 46.9
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 2.5e-16 89.4 147 46.9
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 3.2e-16 89.0 70 74.3
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 3.2e-16 89.0 92 59.8
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 4.2e-16 88.6 65 73.8
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 4.2e-16 88.6 98 57.1
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 5.5e-16 88.2 147 44.2
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 7.1e-16 87.8 160 43.8
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 7.1e-16 87.8 137 46.7
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 1.2e-15 87.0 168 45.2
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 1.6e-15 86.7 70 71.4
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 2.1e-15 86.3 69 72.5
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 2.7e-15 85.9 138 46.4
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 3.5e-15 85.5 81 67.9
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 4.6e-15 85.1 148 41.9
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 7.9e-15 84.3 117 43.6
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 7.9e-15 84.3 83 61.4
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 1.0e-14 84.0 165 44.2
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 1.0e-14 84.0 124 46.8
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 1.3e-14 83.6 105 50.5
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 1.3e-14 83.6 141 48.2
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 1.3e-14 83.6 61 68.9
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 1.8e-14 83.2 70 67.1
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 2.3e-14 82.8 65 70.8
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 2.3e-14 82.8 141 48.2
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 3.0e-14 82.4 137 48.9
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 3.0e-14 82.4 137 48.9
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 3.0e-14 82.4 157 43.9
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 3.9e-14 82.0 73 67.1
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 5.1e-14 81.6 65 73.8
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 5.1e-14 81.6 65 73.8
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.9e-13 79.7 59 62.7
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 1.9e-13 79.7 69 66.7
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 1.9e-13 79.7 100 55.0
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 2.5e-13 79.3 139 47.5
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 4.3e-13 78.6 139 47.5
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 4.3e-13 78.6 108 50.9
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 7.4e-13 77.8 59 78.0
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 2.8e-12 75.9 130 46.9
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 3.7e-12 75.5 80 56.2
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.8e-11 73.2 47 70.2
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 5.3e-11 71.6 59 72.9
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 1.2e-10 70.5 144 44.4
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 1.2e-10 70.5 59 71.2
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 3.4e-10 68.9 120 45.0
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 2.5e-08 62.8 64 57.8
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 4.2e-08 62.0 95 47.4
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 1.6e-07 60.1 91 42.9
DCAR_006372 Daucus carota HOM05D007680 ORTHO05D009702 2.1e-07 59.7 106 45.3
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 7.9e-07 57.8 94 45.7
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 3.0e-06 55.8 102 42.2


User provided reference genes

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