Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 0.0e+00 1533.5 749 100.0
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.4e-266 921.8 688 67.3
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 3.2e-264 915.2 686 67.1
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.8e-259 899.4 714 64.7
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.8e-259 899.4 666 67.9
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.5e-256 889.0 685 64.5
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.2e-256 888.3 685 64.5
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 6.5e-249 864.4 687 62.9
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.7e-247 859.0 707 61.0
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.1e-243 847.0 669 62.0
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 9.1e-243 844.0 687 61.0
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.6e-242 842.4 671 62.1
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 2.6e-242 842.4 676 61.7
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 2.6e-242 842.4 694 60.5
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.8e-241 838.6 671 62.0
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.0e-241 838.2 671 61.8
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.0e-241 838.2 691 60.2
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 8.5e-241 837.4 689 60.4
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 4.2e-240 835.1 684 60.1
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 7.2e-240 834.3 685 59.6
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 7.2e-240 834.3 726 58.7
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.2e-239 833.6 683 59.9
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 4.7e-239 831.6 678 60.6
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.7e-239 831.6 718 59.6
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.8e-238 829.7 758 55.8
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 2.3e-238 829.3 684 59.6
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.2e-237 827.0 687 59.7
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.5e-237 826.6 686 60.1
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 9.7e-237 823.9 683 60.3
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 2.2e-236 822.8 683 60.0
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 8.3e-236 820.8 687 60.0
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.8e-235 819.7 669 60.2
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 2.4e-235 819.3 685 58.8
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 7.7e-234 814.3 667 60.1
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.3e-233 813.5 686 59.9
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.5e-233 811.2 681 59.8
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.1e-232 810.4 733 56.3
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.5e-232 810.1 713 59.5
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 6.1e-231 804.7 690 58.4
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.1e-231 804.7 699 58.1
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 3.0e-230 802.4 699 56.7
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.0e-230 802.4 684 58.8
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 8.8e-230 800.8 696 57.6
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 2.0e-229 799.7 667 58.6
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 2.0e-229 799.7 601 65.4
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 7.5e-229 797.7 666 59.3
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 7.5e-229 797.7 677 58.5
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.7e-228 796.6 709 56.8
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 4.8e-228 795.0 658 59.0
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 5.4e-227 791.6 672 58.0
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 9.1e-227 790.8 673 58.5
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 4.5e-226 788.5 683 56.7
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.0e-225 787.3 672 58.6
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.7e-225 786.6 677 57.6
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 5.0e-225 785.0 677 58.5
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 6.6e-225 784.6 693 56.9
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 6.6e-225 784.6 675 57.2
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.9e-224 783.1 671 57.2
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 7.2e-224 781.2 650 60.2
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 2.1e-223 779.6 661 57.6
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 3.6e-223 778.9 663 58.2
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.0e-222 777.3 680 56.6
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 5.2e-222 775.0 691 56.0
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.2e-221 773.9 679 57.1
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.5e-221 773.5 657 59.4
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 3.4e-221 772.3 691 56.2
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 3.4e-221 772.3 681 56.5
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 9.8e-221 770.8 688 56.5
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 4.9e-220 768.5 673 56.8
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 9.2e-219 764.2 688 55.2
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 4.5e-218 761.9 690 55.4
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 7.8e-218 761.1 671 56.8
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 7.8e-218 761.1 661 56.9
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.9e-216 756.5 651 58.7
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 2.1e-215 753.1 665 57.1
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.0e-214 750.7 671 56.2
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.7e-212 743.4 684 54.4
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.7e-210 736.1 686 53.9
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 2.3e-209 733.0 848 47.9
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.3e-208 728.8 686 55.0
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.2e-207 727.2 602 60.5
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.6e-207 726.9 695 51.9
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.6e-207 725.7 684 54.1
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.1e-206 722.6 629 57.6
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 5.8e-205 718.4 592 61.3
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 7.5e-205 718.0 686 52.3
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 9.8e-205 717.6 618 58.3
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 3.7e-204 715.7 686 51.3
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 8.3e-204 714.5 660 55.9
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 2.7e-202 709.5 674 52.7
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 7.8e-202 708.0 678 51.2
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 7.8e-202 708.0 686 51.0
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.3e-201 707.2 672 51.9
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.9e-200 703.4 671 54.8
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 4.3e-200 702.2 667 51.9
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 7.3e-200 701.4 670 51.5
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.8e-199 699.5 659 55.2
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-198 697.2 686 50.6
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.4e-198 697.2 680 51.8
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.8e-198 696.8 687 50.5
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 2.3e-198 696.4 670 51.0
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 2.3e-198 696.4 670 51.0
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 9.9e-197 691.0 675 53.2
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.2e-195 686.0 682 50.6
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 4.6e-194 682.2 670 50.6
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 7.8e-194 681.4 684 50.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 5.1e-193 678.7 684 49.9
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.5e-192 677.2 663 54.0
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.2e-191 674.1 697 49.2
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.2e-191 674.1 680 50.1
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.6e-191 672.5 674 50.4
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 4.7e-191 672.2 699 50.4
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 6.2e-191 671.8 682 50.4
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.7e-188 663.7 670 52.1
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 4.9e-188 662.1 730 47.8
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 8.4e-188 661.4 691 48.5
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 8.4e-188 661.4 663 52.6
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.4e-187 659.8 732 48.5
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 2.7e-186 656.4 678 49.9
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.1e-184 651.0 633 51.8
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.5e-184 650.6 672 51.5
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.9e-184 650.2 685 49.9
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.8e-183 646.4 737 47.8
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.1e-182 644.4 647 52.7
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 9.0e-182 641.3 531 61.2
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 7.3e-176 621.7 667 48.4
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 6.9e-166 588.6 688 45.5
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 7.6e-165 585.1 644 49.5
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 3.2e-163 579.7 562 54.8
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 6.0e-162 575.5 656 47.1
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.8e-158 563.9 526 54.9
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 4.2e-139 499.6 537 48.0
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.3e-132 478.0 428 58.6
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-128 464.9 339 64.3
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 2.5e-123 447.2 423 49.9
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 5.2e-113 412.9 369 55.0
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 2.1e-98 364.4 298 57.4
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 3.1e-97 360.5 231 74.0
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 8.3e-95 352.4 322 50.6
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 4.3e-91 340.1 405 46.2
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.6e-90 338.2 452 41.4
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 2.3e-81 307.8 311 46.3
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 9.2e-78 295.8 560 31.8
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.7e-76 291.6 543 33.5
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 3.3e-67 260.8 304 45.7
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 9.6e-67 259.2 326 47.2
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 4.0e-57 227.3 150 68.7
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.7e-55 221.9 149 68.5
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 9.6e-51 206.1 165 60.0
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.4e-49 202.2 124 72.6
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.5e-46 190.3 225 46.7
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 9.3e-46 189.5 245 44.9
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.9e-44 184.1 128 64.8
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 6.9e-41 173.3 222 42.3
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 3.2e-38 164.5 213 45.1
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.4e-33 148.3 371 30.5
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 4.5e-32 144.1 181 43.6
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 4.2e-30 137.5 99 63.6
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 4.2e-30 137.5 99 63.6
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 4.2e-30 137.5 99 63.6
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 4.8e-26 124.0 262 34.0
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.0e-24 118.6 152 41.4
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 5.5e-22 110.5 244 30.7
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.2e-21 109.4 243 32.9
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 6.7e-20 103.6 226 31.4
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 1.1e-17 96.3 59 71.2
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.0e-15 89.7 77 59.7
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 3.8e-15 87.8 145 36.6
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.8e-15 87.8 205 31.2
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 9.4e-14 83.2 48 70.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 9.4e-14 83.2 48 70.8
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.0e-12 78.2 122 35.2
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.5e-06 59.3 46 58.7


User provided reference genes

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