Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01206 Erythranthe guttata HOM05D003010 ORTHO05D003623 1.2e-42 176.0 87 100.0
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 1.7e-15 85.9 83 56.6
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 1.7e-15 85.9 87 54.0
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 2.9e-15 85.1 87 54.0
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 4.9e-15 84.3 87 54.0
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 4.9e-15 84.3 87 54.0
Rhsim09G0189200 Rhododendron simsii HOM05D003010 ORTHO05D003623 6.4e-15 84.0 87 54.0
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 2.4e-14 82.0 89 50.6
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 4.2e-14 81.3 89 51.7
Actinidia31768 Actinidia chinensis HOM05D003010 ORTHO05D003623 5.4e-14 80.9 85 52.9
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 5.4e-14 80.9 81 50.6
Solyc05g052080.1 Solanum lycopersicum HOM05D003010 ORTHO05D003623 9.2e-14 80.1 92 51.1
Lj5g0011838 Lotus japonicus HOM05D003010 ORTHO05D003623 1.6e-13 79.3 88 52.3
Actinidia01040 Actinidia chinensis HOM05D000255 ORTHO05D000935 2.7e-13 78.6 84 48.8
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.7e-13 78.6 90 51.1
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.7e-13 78.6 90 51.1
Peaxi162Scf00167g01022 Petunia axillaris HOM05D003010 ORTHO05D003623 3.5e-13 78.2 91 48.4
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 4.6e-13 77.8 89 52.8
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 7.8e-13 77.0 85 52.9
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 1.0e-12 76.6 88 45.5
Phvul.007G138100 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 1.0e-12 76.6 87 47.1
Prupe.2G271700 Prunus persica HOM05D003010 ORTHO05D003623 1.0e-12 76.6 90 50.0
CiPaw.07G184100 Carya illinoinensis HOM05D003010 ORTHO05D003623 1.3e-12 76.3 88 48.9
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 1.3e-12 76.3 88 45.5
Potri.001G080500 Populus trichocarpa HOM05D003010 ORTHO05D003623 1.3e-12 76.3 92 46.7
Sabra01G0057700 Salix brachista HOM05D000255 ORTHO05D000935 1.7e-12 75.9 92 46.7
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 1.7e-12 75.9 82 51.2
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 2.3e-12 75.5 86 44.2
PSO782G2859 Papaver somniferum HOM05D003010 ORTHO05D003623 2.3e-12 75.5 80 53.8
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 3.0e-12 75.1 85 49.4
arahy.Tifrunner.gnm1.ann1.I909QJ Arachis hypogaea HOM05D003010 ORTHO05D003623 3.9e-12 74.7 86 47.7
arahy.Tifrunner.gnm1.ann1.Y5VFEC Arachis hypogaea HOM05D003010 ORTHO05D003623 3.9e-12 74.7 86 47.7
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 3.9e-12 74.7 81 48.1
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 3.9e-12 74.7 85 49.4
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 3.9e-12 74.7 88 46.6
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 3.9e-12 74.7 85 48.2
TWI39G0461 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 3.9e-12 74.7 86 47.7
Gohir.D09G249800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 5.1e-12 74.3 83 53.0
Gorai.006G274200 Gossypium raimondii HOM05D003010 ORTHO05D003623 5.1e-12 74.3 83 53.0
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 5.1e-12 74.3 82 48.8
CiPaw.11G070300 Carya illinoinensis HOM05D003010 ORTHO05D003623 6.6e-12 73.9 83 53.0
Cfa013595 Carpinus fangiana HOM05D000255 ORTHO05D000935 8.7e-12 73.6 86 45.3
Migut.F00533 Erythranthe guttata HOM05D003010 ORTHO05D003623 8.7e-12 73.6 85 48.2
PSO063G3783 Papaver somniferum HOM05D003010 ORTHO05D003623 8.7e-12 73.6 80 52.5
Sed0025535 Sechium edule HOM05D003010 ORTHO05D003623 8.7e-12 73.6 86 51.2
VMungo0720G1826 Vigna mungo HOM05D002495 ORTHO05D003623 8.7e-12 73.6 82 47.6
BcaB01g05695 Brassica carinata HOM05D003010 ORTHO05D003623 1.1e-11 73.2 82 52.4
BcaB01g06045 Brassica carinata HOM05D003010 ORTHO05D003623 1.1e-11 73.2 82 52.4
BolC3t12913H Brassica oleracea HOM05D003010 ORTHO05D003623 1.1e-11 73.2 82 52.4
Ca_10413_v3 Cicer arietinum L. HOM05D003010 ORTHO05D000523 1.1e-11 73.2 91 44.0
Hma1.2p1_1014F.1_g248010 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 1.1e-11 73.2 90 44.4
Hma1.2p1_1305F.1_g274559 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 1.1e-11 73.2 90 44.4
vmacro00038 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 1.1e-11 73.2 81 46.9
BcaB01g05694 Brassica carinata HOM05D003010 ORTHO05D003623 1.5e-11 72.8 82 53.7
CANSAT56G3417 Cannabis sativa HOM05D003010 ORTHO05D003623 1.5e-11 72.8 86 50.0
C03p03770 Brassica napus HOM05D003010 ORTHO05D003623 1.9e-11 72.4 82 52.4
Sp6g35370 Schrenkiella parvula HOM05D003010 ORTHO05D003623 1.9e-11 72.4 82 53.7
Haze_22213 Corylus avellana HOM05D000255 ORTHO05D000935 2.5e-11 72.0 86 44.2
AL6G17794 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 3.3e-11 71.6 82 52.4
Manes.14G039600 Manihot esculenta HOM05D003010 ORTHO05D003623 3.3e-11 71.6 84 47.6
TPR.G13393 Trifolium pratense HOM05D003010 ORTHO05D003623 3.3e-11 71.6 93 40.9
Ciclev10023073m.g Citrus clementina HOM05D003010 ORTHO05D003623 4.3e-11 71.2 82 50.0
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 4.3e-11 71.2 85 47.1
FAN10G3636 Fragaria x ananassa HOM05D003010 ORTHO05D003623 4.3e-11 71.2 50 64.0
vmacro09926 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 4.3e-11 71.2 84 51.2
Aqoxy3G02705 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 5.6e-11 70.9 50 64.0
A03p03330 Brassica napus HOM05D003010 ORTHO05D003623 5.6e-11 70.9 82 51.2
BraA03t09685Z Brassica rapa HOM05D003010 ORTHO05D003623 5.6e-11 70.9 82 51.2
Haze_07981 Corylus avellana HOM05D003010 ORTHO05D003623 5.6e-11 70.9 85 50.6
Dinv21689 Davidia involucrata HOM05D003010 ORTHO05D003623 5.6e-11 70.9 81 48.1
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 5.6e-11 70.9 85 47.1
Lj1A974G32 Lonicera japonica HOM05D003010 ORTHO05D003623 5.6e-11 70.9 94 48.9
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 5.6e-11 70.9 81 50.6
AT5G07490 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 7.3e-11 70.5 82 52.4
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 9.6e-11 70.1 82 48.8
Dinv28854 Davidia involucrata HOM05D003010 ORTHO05D003623 9.6e-11 70.1 85 44.7
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 9.6e-11 70.1 81 48.1
Ciclev10007152m.g Citrus clementina HOM05D003010 ORTHO05D003623 1.3e-10 69.7 81 48.1
FAN01G3086 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.3e-10 69.7 87 48.3
Gohir.D03G167000 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.6e-10 69.3 84 50.0
RcHm_v2.0_Chr1g0373521 Rosa chinensis HOM05D003010 ORTHO05D003623 1.6e-10 69.3 86 47.7
Thecc.03G147400 Theobroma cacao HOM05D003010 ORTHO05D003623 1.6e-10 69.3 80 51.2
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 2.1e-10 68.9 82 46.3
Gohir.A03G005500 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.1e-10 68.9 84 50.0
Gorai.003G176600 Gossypium raimondii HOM05D003010 ORTHO05D003623 2.1e-10 68.9 84 50.0
CARHR205640 Cardamine hirsuta HOM05D003010 ORTHO05D003623 2.8e-10 68.6 82 50.0
MELO3C017634.2 Cucumis melo HOM05D003010 ORTHO05D003623 2.8e-10 68.6 89 46.1
Gohir.A09G248900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 3.6e-10 68.2 81 50.6
Lsat_1_v5_gn_2_127061 Lactuca sativa HOM05D003010 ORTHO05D003623 3.6e-10 68.2 90 46.7
FvH4_7g26830 Fragaria vesca HOM05D003010 ORTHO05D003623 4.8e-10 67.8 84 48.8
FAN03G0814 Fragaria x ananassa HOM05D000255 ORTHO05D003623 4.8e-10 67.8 84 48.8
Actinidia25899 Actinidia chinensis HOM05D003010 ORTHO05D003623 6.2e-10 67.4 82 50.0
BcaC06g33261 Brassica carinata HOM05D003010 ORTHO05D003623 6.2e-10 67.4 82 52.4
A03p47240 Brassica napus HOM05D003010 ORTHO05D003623 6.2e-10 67.4 82 52.4
C07p45350 Brassica napus HOM05D003010 ORTHO05D003623 6.2e-10 67.4 82 52.4
BolC7t45056H Brassica oleracea HOM05D003010 ORTHO05D003623 6.2e-10 67.4 82 52.4
BraA03t13851Z Brassica rapa HOM05D003010 ORTHO05D003623 6.2e-10 67.4 82 52.4
CsaV3_4G004320 Cucumis sativus L. HOM05D003010 ORTHO05D003623 6.2e-10 67.4 89 46.1
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 6.2e-10 67.4 81 44.4
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 8.1e-10 67.0 91 42.9
Carub.0006s0648 Capsella rubella HOM05D003010 ORTHO05D003623 1.1e-09 66.6 82 50.0
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 1.1e-09 66.6 89 48.3
Thhalv10015492m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 1.1e-09 66.6 82 50.0
Actinidia02185 Actinidia chinensis HOM05D003010 ORTHO05D003623 1.4e-09 66.2 81 45.7
Ah.12g054120 Amaranthus hybridus HOM05D003010 ORTHO05D003623 1.4e-09 66.2 93 43.0
AL8G38370 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 1.4e-09 66.2 82 51.2
AT5G61630 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 1.4e-09 66.2 82 51.2
Lalb_Chr06g0169801 Lupinus albus HOM05D003010 ORTHO05D003623 1.4e-09 66.2 89 40.4
PGR042G0835 Punica granatum HOM05D003010 ORTHO05D003623 1.8e-09 65.9 82 42.7
BcaC06g33143 Brassica carinata HOM05D003010 ORTHO05D003623 2.4e-09 65.5 82 51.2
HPP92_023172 Vanilla planifolia HOM05D003010 ORTHO05D003623 2.4e-09 65.5 81 43.2
Aa31LG3G18910 Aethionema arabicum HOM05D003010 ORTHO05D003623 3.1e-09 65.1 84 47.6
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 3.1e-09 65.1 81 44.4
FAN06G5032 Fragaria x ananassa HOM05D000255 ORTHO05D000935 4.0e-09 64.7 84 47.6
Potri.003G081900 Populus trichocarpa HOM05D003010 ORTHO05D003623 4.0e-09 64.7 81 48.1
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 4.0e-09 64.7 81 44.4
BcaC03g18078 Brassica carinata HOM05D003010 ORTHO05D003623 5.3e-09 64.3 83 49.4
A02p41560 Brassica napus HOM05D003010 ORTHO05D003623 5.3e-09 64.3 83 49.4
C02p61500 Brassica napus HOM05D003010 ORTHO05D003623 5.3e-09 64.3 83 49.4
BolC2t12200H Brassica oleracea HOM05D003010 ORTHO05D003623 5.3e-09 64.3 83 49.4
BraA02t09098Z Brassica rapa HOM05D003010 ORTHO05D003623 5.3e-09 64.3 83 49.4
FAN08G3583 Fragaria x ananassa HOM05D003010 ORTHO05D003623 5.3e-09 64.3 49 53.1
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 5.3e-09 64.3 81 44.4
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 5.3e-09 64.3 81 44.4
Oeu017218.3 Olea europaea HOM05D003010 ORTHO05D003623 6.9e-09 63.9 81 44.4
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 6.9e-09 63.9 82 47.6
Ah.07g199010 Amaranthus hybridus HOM05D003010 ORTHO05D003623 9.0e-09 63.5 90 41.1
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 9.0e-09 63.5 83 42.2
Rhsim04G0160200 Rhododendron simsii HOM05D003010 ORTHO05D003623 9.0e-09 63.5 82 46.3
Sabra03G0052800 Salix brachista HOM05D003010 ORTHO05D003623 9.0e-09 63.5 83 43.4
Sc07g0009120 Simmondsia chinensis HOM05D003010 ORTHO05D003623 9.0e-09 63.5 85 43.5
ECA238G2786 Erigeron canadensis HOM05D003010 ORTHO05D003623 1.2e-08 63.2 91 45.1
Manes.01G086500 Manihot esculenta HOM05D003010 ORTHO05D003623 1.2e-08 63.2 83 43.4
Manes.02G043601 Manihot esculenta HOM05D003010 ORTHO05D003623 1.2e-08 63.2 81 43.2
Potri.001G152700 Populus trichocarpa HOM05D003010 ORTHO05D003623 1.2e-08 63.2 82 43.9
QL09p027705 Quercus lobata HOM05D003010 ORTHO05D003623 1.2e-08 63.2 81 45.7
Eucgr.A02926 Eucalyptus grandis HOM05D003010 ORTHO05D003623 1.5e-08 62.8 82 43.9
FvH4_5g20070 Fragaria vesca HOM05D003010 ORTHO05D003623 2.0e-08 62.4 46 54.3
FAN04G3127 Fragaria x ananassa HOM05D003010 ORTHO05D003623 2.0e-08 62.4 46 54.3
FAN13G2988 Fragaria x ananassa HOM05D003010 ORTHO05D003623 2.0e-08 62.4 46 54.3
FAN18G3981 Fragaria x ananassa HOM05D003010 ORTHO05D003623 2.0e-08 62.4 46 54.3
Cc08_g11590 Coffea canephora HOM05D003010 ORTHO05D003623 2.6e-08 62.0 49 53.1
Thhalv10005478m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 2.6e-08 62.0 82 47.6
MD06G1049300 Malus domestica HOM05D003010 ORTHO05D003623 2.6e-08 62.0 91 41.8
Migut.A01045 Erythranthe guttata HOM05D003010 ORTHO05D003623 3.4e-08 61.6 81 43.2
Atru.chr9.1234 Acer truncatum HOM05D003010 ORTHO05D003623 4.4e-08 61.2 57 47.4
arahy.Tifrunner.gnm1.ann1.AIXL5Y Arachis hypogaea HOM05D003010 ORTHO05D003623 4.4e-08 61.2 47 51.1
arahy.Tifrunner.gnm1.ann1.YNCC4F Arachis hypogaea HOM05D003010 ORTHO05D003623 4.4e-08 61.2 47 51.1
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 4.4e-08 61.2 83 38.6
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 5.8e-08 60.8 81 43.2
CARHR275430 Cardamine hirsuta HOM05D003010 ORTHO05D003623 7.6e-08 60.5 82 48.8
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 7.6e-08 60.5 81 39.5
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 9.9e-08 60.1 81 39.5
Eucgr.E00369 Eucalyptus grandis HOM05D003010 ORTHO05D003623 1.3e-07 59.7 46 58.7
Sp2g24840 Schrenkiella parvula HOM05D003010 ORTHO05D003623 1.3e-07 59.7 82 48.8
Carub.0008s2233 Capsella rubella HOM05D003010 ORTHO05D003623 1.7e-07 59.3 82 46.3
HanXRQChr14g0461131 Helianthus annuus HOM05D003010 ORTHO05D003623 1.7e-07 59.3 89 41.6
Medtr5g013240 Medicago truncatula HOM05D003010 ORTHO05D003623 2.9e-07 58.5 45 55.6
DCAR_000647 Daucus carota HOM05D003010 ORTHO05D003623 3.8e-07 58.2 66 48.5
HanXRQChr10g0316761 Helianthus annuus HOM05D003010 ORTHO05D003623 3.8e-07 58.2 81 45.7
Phvul.002G000700 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 3.8e-07 58.2 59 49.2
AT4G16840 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 4.9e-07 57.8 82 41.5
RcHm_v2.0_Chr7g0204931 Rosa chinensis HOM05D003010 ORTHO05D003623 4.9e-07 57.8 92 40.2
Cpa.g.sc13.241 Carica papaya HOM05D003010 ORTHO05D003623 6.4e-07 57.4 81 40.7
TPR.G31425 Trifolium pratense HOM05D003010 ORTHO05D003623 6.4e-07 57.4 45 53.3
THA.LOC104801625 Tarenaya hassleriana HOM05D003010 ORTHO05D003623 8.4e-07 57.0 81 43.2
EL10Ac8g18592 Beta vulgaris HOM05D003010 ORTHO05D003623 1.1e-06 56.6 85 41.2
Prupe.5G059800 Prunus persica HOM05D003010 ORTHO05D003623 1.1e-06 56.6 86 39.5
Glyma.01G205800 Glycine max HOM05D003010 ORTHO05D003623 1.4e-06 56.2 65 40.0
MD11G1119900 Malus domestica HOM05D008454 ORTHO05D010339 1.9e-06 55.8 46 58.7
Peaxi162Scf00446g00412 Petunia axillaris HOM05D003010 ORTHO05D003623 1.9e-06 55.8 81 38.3
QL02p087437 Quercus lobata HOM05D009305 ORTHO05D010439 2.4e-06 55.5 58 46.6
Rhsim01G0078400 Rhododendron simsii HOM05D003010 ORTHO05D010439 2.4e-06 55.5 60 46.7
Sed0000436 Sechium edule HOM05D003010 ORTHO05D003623 2.4e-06 55.5 90 41.1
TAR625G0712 Trochodendron aralioides HOM05D003010 ORTHO05D010439 2.4e-06 55.5 83 39.8
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 3.2e-06 55.1 82 41.5
DCAR_004599 Daucus carota HOM05D003010 ORTHO05D003623 3.2e-06 55.1 59 47.5
Lalb_Chr09g0324231 Lupinus albus HOM05D003010 ORTHO05D003623 4.2e-06 54.7 81 38.3
Carub.0004s1739 Capsella rubella HOM05D003010 ORTHO05D003623 5.4e-06 54.3 84 42.9
Thhalv10017475m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 5.4e-06 54.3 87 42.5
Hund11331 Selenicereus undatus HOM05D003010 ORTHO05D003623 5.4e-06 54.3 96 41.7
Sopen05g030630 Solanum pennellii HOM05D003010 ORTHO05D003623 7.1e-06 53.9 34 67.6
BcaB04g18394 Brassica carinata HOM05D001429 ORTHO05D001420 9.3e-06 53.5 84 41.7
CARHR129910 Cardamine hirsuta HOM05D003010 ORTHO05D003623 9.3e-06 53.5 85 38.8
DCAR_020169 Daucus carota HOM05D003010 ORTHO05D003623 9.3e-06 53.5 60 48.3


User provided reference genes

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