Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01117 Erythranthe guttata HOM05D000607 ORTHO05D000518 6.7e-28 126.7 68 100.0
Actinidia34115 Actinidia chinensis HOM05D000607 ORTHO05D000518 2.2e-15 85.1 67 65.7
CAN.G490.33 Capsicum annuum HOM05D000607 ORTHO05D000518 6.5e-15 83.6 67 61.2
Solyc03g025800.3 Solanum lycopersicum HOM05D000607 ORTHO05D000518 6.5e-15 83.6 67 61.2
Sopen03g004610 Solanum pennellii HOM05D000607 ORTHO05D000518 6.5e-15 83.6 67 61.2
PGSC0003DMG400014342 Solanum tuberosum HOM05D000607 ORTHO05D000518 6.5e-15 83.6 67 61.2
HanXRQChr09g0253611 Helianthus annuus HOM05D000607 ORTHO05D000518 8.5e-15 83.2 67 62.7
Hma1.2p1_0270F.1_g108010 Hydrangea macrophylla HOM05D000607 ORTHO05D000518 8.5e-15 83.2 67 62.7
Lsat_1_v5_gn_9_55940 Lactuca sativa HOM05D000607 ORTHO05D000518 8.5e-15 83.2 67 62.7
Nitab4.5_0002117g0010 Nicotiana tabacum HOM05D000607 ORTHO05D000518 1.1e-14 82.8 67 59.7
Nitab4.5_0003072g0030 Nicotiana tabacum HOM05D000607 ORTHO05D000518 1.1e-14 82.8 67 59.7
ECA232G0205 Erigeron canadensis HOM05D000607 ORTHO05D000518 1.5e-14 82.4 67 61.2
Peaxi162Scf00444g00840 Petunia axillaris HOM05D000607 ORTHO05D000518 1.5e-14 82.4 67 59.7
Nitab4.5_0001842g0020 Nicotiana tabacum HOM05D000607 ORTHO05D000518 2.5e-14 81.6 67 58.2
CANSAT21G1682 Cannabis sativa HOM05D000607 ORTHO05D000518 3.2e-14 81.3 67 61.2
Dinv28439 Davidia involucrata HOM05D000607 ORTHO05D000518 3.2e-14 81.3 67 61.2
Migut.F01118 Erythranthe guttata HOM05D000607 ORTHO05D000518 3.2e-14 81.3 67 62.7
Medtr1g100587 Medicago truncatula HOM05D000607 ORTHO05D000518 3.2e-14 81.3 67 59.7
CiPaw.03G106600 Carya illinoinensis HOM05D000607 ORTHO05D000518 4.2e-14 80.9 67 59.7
Duzib084G1049 Durio zibethinus HOM05D000607 ORTHO05D000518 4.2e-14 80.9 67 59.7
vmacro06679 Vaccinium macrocarpon HOM05D000607 ORTHO05D000518 5.5e-14 80.5 67 61.2
MSTRG.91 Avicennia marina HOM05D000607 ORTHO05D000518 7.2e-14 80.1 67 58.2
SGA_v2.0_scaffold60G21045 Striga asiatica HOM05D000607 ORTHO05D000518 7.2e-14 80.1 67 61.2
HPP92_022561 Vanilla planifolia HOM05D000607 ORTHO05D000518 7.2e-14 80.1 67 58.2
Duzib205G0442 Durio zibethinus HOM05D000607 ORTHO05D000518 9.4e-14 79.7 67 59.7
RcHm_v2.0_Chr1g0377351 Rosa chinensis HOM05D000607 ORTHO05D000518 9.4e-14 79.7 67 58.2
Sc19g0001500 Simmondsia chinensis HOM05D000607 ORTHO05D000518 9.4e-14 79.7 67 61.2
arahy.Tifrunner.gnm1.ann1.N1W8DH Arachis hypogaea HOM05D000607 ORTHO05D000518 1.2e-13 79.3 67 56.7
arahy.Tifrunner.gnm1.ann1.QHK7TD Arachis hypogaea HOM05D000607 ORTHO05D000518 1.2e-13 79.3 67 56.7
CSS0007996 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 1.2e-13 79.3 67 59.7
CSS0011803 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 1.2e-13 79.3 67 59.7
Migut.F00338 Erythranthe guttata HOM05D000607 ORTHO05D000518 1.2e-13 79.3 67 59.7
Psat6g198560 Pisum sativum HOM05D000607 ORTHO05D000518 1.2e-13 79.3 67 58.2
PGR042G2454 Punica granatum HOM05D000607 ORTHO05D000518 1.2e-13 79.3 67 58.2
TPR.G14333 Trifolium pratense HOM05D000071 ORTHO05D000029 1.2e-13 79.3 67 56.7
CSS0020590 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 1.6e-13 79.0 67 58.2
CSS0049347 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 1.6e-13 79.0 67 58.2
Phvul.004G116400 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 1.6e-13 79.0 67 58.2
SalBow4G0149 Salvia bowleyana HOM05D000607 ORTHO05D000518 1.6e-13 79.0 67 58.2
SalBow4G2098 Salvia bowleyana HOM05D000607 ORTHO05D000518 1.6e-13 79.0 67 58.2
THA.LOC104798928 Tarenaya hassleriana HOM05D000607 ORTHO05D000518 1.6e-13 79.0 67 58.2
Actinidia31820 Actinidia chinensis HOM05D000607 ORTHO05D000518 2.1e-13 78.6 67 56.7
Glyma.09G138600 Glycine max HOM05D000607 ORTHO05D000518 2.1e-13 78.6 67 58.2
PSO478G3266 Papaver somniferum HOM05D000607 ORTHO05D000518 2.1e-13 78.6 67 58.2
PSO782G3265 Papaver somniferum HOM05D000607 ORTHO05D000518 2.1e-13 78.6 67 58.2
CiPaw.04G071200 Carya illinoinensis HOM05D000607 ORTHO05D000518 2.7e-13 78.2 67 58.2
Dinv38957 Davidia involucrata HOM05D000607 ORTHO05D000518 2.7e-13 78.2 67 58.2
Eucgr.A02786 Eucalyptus grandis HOM05D000607 ORTHO05D000518 2.7e-13 78.2 67 56.7
Glyma.16G189302 Glycine max HOM05D000607 ORTHO05D000518 2.7e-13 78.2 67 58.2
Lj2g0016591 Lotus japonicus HOM05D000607 ORTHO05D000518 2.7e-13 78.2 67 58.2
SGA_v2.0_scaffold44G16724 Striga asiatica HOM05D000607 ORTHO05D000518 2.7e-13 78.2 67 56.7
VMungo0464G2180 Vigna mungo HOM05D000607 ORTHO05D000518 2.7e-13 78.2 67 56.7
arahy.Tifrunner.gnm1.ann1.U9GE21 Arachis hypogaea HOM05D000607 ORTHO05D000518 3.6e-13 77.8 67 55.2
FvH4_7g29510 Fragaria vesca HOM05D000607 ORTHO05D000518 3.6e-13 77.8 67 56.7
FAN03G1315 Fragaria x ananassa HOM05D000607 ORTHO05D000518 3.6e-13 77.8 67 56.7
FAN03G1886 Fragaria x ananassa HOM05D000607 ORTHO05D000518 3.6e-13 77.8 67 56.7
FAN06G0737 Fragaria x ananassa HOM05D000607 ORTHO05D000518 3.6e-13 77.8 67 56.7
FAN06G1071 Fragaria x ananassa HOM05D000607 ORTHO05D000518 3.6e-13 77.8 67 56.7
Sabra12G0106400 Salix brachista HOM05D000607 ORTHO05D000518 3.6e-13 77.8 67 58.2
Hund04743 Selenicereus undatus HOM05D000607 ORTHO05D000518 3.6e-13 77.8 67 58.2
Cpa.g.sc107.55 Carica papaya HOM05D000607 ORTHO05D000518 4.7e-13 77.4 62 62.9
ClCG09G012900 Citrullus lanatus HOM05D000607 ORTHO05D000518 4.7e-13 77.4 67 56.7
CsaV3_3G049960 Cucumis sativus L. HOM05D000607 ORTHO05D000518 4.7e-13 77.4 67 56.7
Gohir.A09G041900 Gossypium hirsutum HOM05D000607 ORTHO05D000518 4.7e-13 77.4 67 58.2
Gohir.D09G042800 Gossypium hirsutum HOM05D000607 ORTHO05D000518 4.7e-13 77.4 67 58.2
Gorai.006G049200 Gossypium raimondii HOM05D000607 ORTHO05D000518 4.7e-13 77.4 67 58.2
Manes.06G147500 Manihot esculenta HOM05D000607 ORTHO05D000518 4.7e-13 77.4 67 55.2
Manes.14G026000 Manihot esculenta HOM05D000607 ORTHO05D000518 4.7e-13 77.4 67 56.7
Medtr6g045257 Medicago truncatula HOM05D000607 ORTHO05D000518 4.7e-13 77.4 67 58.2
Prupe.2G294600 Prunus persica HOM05D000607 ORTHO05D000518 4.7e-13 77.4 67 56.7
TPR.G10746 Trifolium pratense HOM05D000607 ORTHO05D000518 4.7e-13 77.4 67 58.2
Aa31LG11G3130 Aethionema arabicum HOM05D000607 ORTHO05D000518 6.1e-13 77.0 67 56.7
Glyma.10G235700 Glycine max HOM05D000607 ORTHO05D000518 6.1e-13 77.0 67 56.7
MD01G1201200 Malus domestica HOM05D000607 ORTHO05D000518 6.1e-13 77.0 67 55.2
Aqoxy7G00358 Aquilegia oxysepala HOM05D000607 ORTHO05D000518 8.0e-13 76.6 67 58.2
AL6G35040 Arabidopsis lyrata HOM05D000607 ORTHO05D000518 8.0e-13 76.6 67 58.2
MSTRG.8735 Avicennia marina HOM05D000607 ORTHO05D000518 8.0e-13 76.6 67 56.7
FAN10G2857 Fragaria x ananassa HOM05D000607 ORTHO05D000518 8.0e-13 76.6 67 55.2
FAN10G3783 Fragaria x ananassa HOM05D000607 ORTHO05D000518 8.0e-13 76.6 67 55.2
Lalb_Chr21g0305041 Lupinus albus HOM05D000607 ORTHO05D000518 8.0e-13 76.6 66 57.6
Potri.015G144200 Populus trichocarpa HOM05D000607 ORTHO05D000518 8.0e-13 76.6 67 58.2
Duzib068G0051 Durio zibethinus HOM05D000607 ORTHO05D000518 1.0e-12 76.3 62 61.3
QL09p014173 Quercus lobata HOM05D000607 ORTHO05D000518 1.0e-12 76.3 67 53.7
Thecc.03G177000 Theobroma cacao HOM05D000607 ORTHO05D000518 1.0e-12 76.3 67 56.7
GSVIVG01028974001 Vitis vinifera HOM05D000607 ORTHO05D000518 1.0e-12 76.3 67 56.7
Lj5g0019793 Lotus japonicus HOM05D000607 ORTHO05D000518 1.4e-12 75.9 67 56.7
Os10g0506100 Oryza sativa ssp. japonica HOM05D000607 ORTHO05D000518 1.4e-12 75.9 67 56.7
Potri.012G141500 Populus trichocarpa HOM05D000607 ORTHO05D000518 1.4e-12 75.9 67 58.2
MSTRG.8457 Avicennia marina HOM05D000607 ORTHO05D000518 1.8e-12 75.5 67 53.7
FAN01G2376 Fragaria x ananassa HOM05D000607 ORTHO05D000518 1.8e-12 75.5 67 55.2
Gohir.A12G257600 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.8e-12 75.5 67 56.7
Gohir.D12G258900 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.8e-12 75.5 67 56.7
Gorai.008G277300 Gossypium raimondii HOM05D000607 ORTHO05D000518 1.8e-12 75.5 67 56.7
Lalb_Chr03g0034561 Lupinus albus HOM05D000607 ORTHO05D000518 1.8e-12 75.5 67 55.2
Carub.0006s2151 Capsella rubella HOM05D000607 ORTHO05D000518 2.3e-12 75.1 67 56.7
CARHR189770 Cardamine hirsuta HOM05D000607 ORTHO05D000518 2.3e-12 75.1 67 56.7
Os03g0111400 Oryza sativa ssp. japonica HOM05D000607 ORTHO05D000518 2.3e-12 75.1 67 55.2
Sp2g23460 Schrenkiella parvula HOM05D000607 ORTHO05D000518 2.3e-12 75.1 67 56.7
Atru.chr1.456 Acer truncatum HOM05D000607 ORTHO05D000518 3.0e-12 74.7 67 58.2
BcaB04g19847 Brassica carinata HOM05D000607 ORTHO05D000518 3.0e-12 74.7 67 55.2
Ca_10768_v3 Cicer arietinum L. HOM05D000607 ORTHO05D000518 3.0e-12 74.7 67 56.7
Oeu024221.1 Olea europaea HOM05D000607 ORTHO05D000518 3.0e-12 74.7 67 58.2
Oeu056258.1 Olea europaea HOM05D000607 ORTHO05D000518 3.0e-12 74.7 65 58.5
TAR374G1069 Trochodendron aralioides HOM05D000607 ORTHO05D000518 3.0e-12 74.7 67 56.7
Zm00001eb404100 Zea mays HOM05D000607 ORTHO05D000518 3.0e-12 74.7 67 53.7
AUR62021189 Chenopodium quinoa HOM05D000262 ORTHO05D009380 4.0e-12 74.3 67 56.7
Lalb_Chr01g0009321 Lupinus albus HOM05D000607 ORTHO05D000518 4.0e-12 74.3 67 55.2
Psat7g192960 Pisum sativum HOM05D000607 ORTHO05D000518 4.0e-12 74.3 67 55.2
THA.LOC104818169 Tarenaya hassleriana HOM05D000607 ORTHO05D000518 4.0e-12 74.3 67 55.2
arahy.Tifrunner.gnm1.ann1.S3TF80 Arachis hypogaea HOM05D000607 ORTHO05D000518 5.2e-12 73.9 70 54.3
PGR031G3795 Punica granatum HOM05D000607 ORTHO05D000518 5.2e-12 73.9 67 53.7
CiPaw.11G137700 Carya illinoinensis HOM05D000607 ORTHO05D000518 6.8e-12 73.6 67 55.2
Peaxi162Scf00102g01540 Petunia axillaris HOM05D000607 ORTHO05D000518 6.8e-12 73.6 67 53.7
Sed0010299 Sechium edule HOM05D000607 ORTHO05D000518 6.8e-12 73.6 67 55.2
TAR636G2948 Trochodendron aralioides HOM05D000607 ORTHO05D000518 6.8e-12 73.6 67 53.7
MD07G1270400 Malus domestica HOM05D000607 ORTHO05D000518 8.8e-12 73.2 65 55.4
AT5G23760 Arabidopsis thaliana HOM05D000607 ORTHO05D000518 1.2e-11 72.8 62 59.7
Cc08_g14460 Coffea canephora HOM05D000607 ORTHO05D000518 1.2e-11 72.8 67 53.7
DCAR_014513 Daucus carota HOM05D000607 ORTHO05D000518 1.2e-11 72.8 66 56.1
Dinv35213 Davidia involucrata HOM05D000262 ORTHO05D009380 1.2e-11 72.8 67 53.7
Gorai.008G245900 Gossypium raimondii HOM05D000607 ORTHO05D000518 1.2e-11 72.8 67 50.7
Nn1g01468 Nelumbo nucifera HOM05D000607 ORTHO05D000518 1.2e-11 72.8 67 56.7
Phvul.007G070001 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 1.2e-11 72.8 67 52.2
TAR367G0009 Trochodendron aralioides HOM05D000607 ORTHO05D000518 1.2e-11 72.8 67 55.2
unitig_52.g17745 Utricularia gibba HOM05D000607 ORTHO05D000518 1.2e-11 72.8 67 50.7
Migut.J01206 Erythranthe guttata HOM05D000607 ORTHO05D000518 1.5e-11 72.4 67 56.7
Migut.J01207 Erythranthe guttata HOM05D000607 ORTHO05D000518 1.5e-11 72.4 67 56.7
PGR142G1784 Punica granatum HOM05D000607 ORTHO05D000518 1.5e-11 72.4 67 53.7
Eucgr.D01867 Eucalyptus grandis HOM05D000607 ORTHO05D000518 2.0e-11 72.0 67 53.7
MD07G1270100 Malus domestica HOM05D000607 ORTHO05D000518 2.0e-11 72.0 62 56.5
SalBow2G0992 Salvia bowleyana HOM05D000607 ORTHO05D000518 2.0e-11 72.0 62 56.5
TWI14G0448 Tripterygium wilfordii HOM05D000607 ORTHO05D000518 2.0e-11 72.0 67 53.7
Zm00001eb044060 Zea mays HOM05D000607 ORTHO05D000518 2.0e-11 72.0 67 53.7
BraA09t36323Z Brassica rapa HOM05D000607 ORTHO05D000518 2.6e-11 71.6 68 57.4
MBI18_g37164_MAGBIO Magnolia biondii HOM05D000607 ORTHO05D000518 2.6e-11 71.6 67 53.7
A06p34650 Brassica napus HOM05D000607 ORTHO05D000518 3.4e-11 71.2 68 55.9
C07p43850 Brassica napus HOM05D000607 ORTHO05D000518 3.4e-11 71.2 68 55.9
BolC7t44913H Brassica oleracea HOM05D000607 ORTHO05D000518 3.4e-11 71.2 68 55.9
TAR636G2619 Trochodendron aralioides HOM05D000607 ORTHO05D000518 3.4e-11 71.2 67 52.2
C09p07520 Brassica napus HOM05D000607 ORTHO05D000518 4.4e-11 70.9 68 55.9
BolC9t53667H Brassica oleracea HOM05D000607 ORTHO05D000518 4.4e-11 70.9 68 55.9
Cc02_g02980 Coffea canephora HOM05D000607 ORTHO05D000518 4.4e-11 70.9 67 53.7
Migut.M01053 Erythranthe guttata HOM05D000607 ORTHO05D000518 4.4e-11 70.9 64 56.2
Gohir.A12G227300 Gossypium hirsutum HOM05D000607 ORTHO05D000518 5.7e-11 70.5 67 49.3
VMungo0720G0520 Vigna mungo HOM05D000607 ORTHO05D000518 5.7e-11 70.5 67 50.7
HanXRQChr15g0495531 Helianthus annuus HOM05D000607 ORTHO05D000518 7.5e-11 70.1 67 53.7
Os04g0533900 Oryza sativa ssp. japonica HOM05D000607 ORTHO05D000518 7.5e-11 70.1 67 53.7
TAR636G0390 Trochodendron aralioides HOM05D000607 ORTHO05D000518 7.5e-11 70.1 66 53.0
unitig_0.g2477 Utricularia gibba HOM05D000607 ORTHO05D000518 7.5e-11 70.1 67 47.8
Psat7g192880 Pisum sativum HOM05D000607 ORTHO05D000518 9.8e-11 69.7 67 52.2
Ciclev10023788m.g Citrus clementina HOM05D000607 ORTHO05D000518 1.3e-10 69.3 67 49.3
ATR1126G057 Amborella trichopoda HOM05D000607 ORTHO05D000518 1.7e-10 68.9 66 56.1
Gohir.A12G227100 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.7e-10 68.9 62 53.2
Gohir.D12G229600 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.7e-10 68.9 62 53.2
Thecc.03G276200 Theobroma cacao HOM05D000607 ORTHO05D000518 1.7e-10 68.9 67 46.3
Gohir.D12G229400 Gossypium hirsutum HOM05D000607 ORTHO05D000518 2.2e-10 68.6 67 47.8
Gorai.008G245700 Gossypium raimondii HOM05D000607 ORTHO05D000518 2.2e-10 68.6 67 47.8
Actinidia02018 Actinidia chinensis HOM05D000607 ORTHO05D000518 2.8e-10 68.2 67 50.7
A09p06780 Brassica napus HOM05D000607 ORTHO05D000518 3.7e-10 67.8 63 58.7
BraA06t26392Z Brassica rapa HOM05D000607 ORTHO05D000518 4.8e-10 67.4 63 57.1
QL12p018251 Quercus lobata HOM05D000607 ORTHO05D000518 4.8e-10 67.4 61 54.1
DCAR_010312 Daucus carota HOM05D000607 ORTHO05D000518 1.4e-09 65.9 62 53.2
CDE09G0370 Ceratophyllum demersum HOM05D000607 ORTHO05D000518 3.1e-09 64.7 66 48.5
TWI39G1228 Tripterygium wilfordii HOM05D000607 ORTHO05D000518 4.1e-09 64.3 67 53.7
CDE11G0981 Ceratophyllum demersum HOM05D000607 ORTHO05D000518 7.0e-09 63.5 66 47.0
HanXRQChr06g0183821 Helianthus annuus HOM05D000607 ORTHO05D000518 1.2e-08 62.8 62 50.0
BcaNung01842 Brassica carinata HOM05D001293 ORTHO05D001143 2.0e-08 62.0 62 54.8
Atru.chr9.2215 Acer truncatum HOM05D000607 ORTHO05D000518 4.5e-08 60.8 59 55.9
COL.COLO4_14312 Corchorus olitorius HOM05D000607 ORTHO05D000518 5.9e-08 60.5 54 57.4
Glyma.16G177900 Glycine max HOM05D000607 ORTHO05D000518 5.0e-07 57.4 60 46.7
Sed0011612 Sechium edule HOM05D000607 ORTHO05D000518 8.6e-07 56.6 60 45.0
MD06G1080000 Malus domestica HOM05D000607 ORTHO05D000518 1.5e-06 55.8 53 50.9
VMungo0464G1937 Vigna mungo HOM05D000607 ORTHO05D000518 1.5e-06 55.8 62 46.8
ClCG01G002360 Citrullus lanatus HOM05D000607 ORTHO05D000518 2.5e-06 55.1 60 46.7
Ciclev10022806m.g Citrus clementina HOM05D000607 ORTHO05D000518 2.5e-06 55.1 60 43.3
Atru.chr9.2122 Acer truncatum HOM05D000607 ORTHO05D000518 3.3e-06 54.7 59 44.1
Haze_08764 Corylus avellana HOM05D001272 ORTHO05D009067 4.2e-06 54.3 60 48.3
Haze_08767 Corylus avellana HOM05D001272 ORTHO05D009067 4.2e-06 54.3 60 48.3
vmacro11406 Vaccinium macrocarpon HOM05D000607 ORTHO05D000518 5.5e-06 53.9 59 45.8
THA.LOC104801392 Tarenaya hassleriana HOM05D000607 ORTHO05D000518 7.2e-06 53.5 60 43.3
TPR.G7773 Trifolium pratense HOM05D000607 ORTHO05D000518 7.2e-06 53.5 60 45.0
unitig_26.g9363 Utricularia gibba HOM05D000607 ORTHO05D000518 7.2e-06 53.5 64 42.2
GSVIVG01019413001 Vitis vinifera HOM05D000607 ORTHO05D000518 7.2e-06 53.5 60 45.0
MELO3C005711.2 Cucumis melo HOM05D000607 ORTHO05D000518 9.5e-06 53.1 60 45.0
vmacro11405 Vaccinium macrocarpon HOM05D000607 ORTHO05D000518 9.5e-06 53.1 63 42.9


User provided reference genes

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