Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 3.1e-276 954.5 479 100.0
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 3.8e-226 788.1 440 85.9
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 1.4e-217 759.6 463 80.1
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 5.5e-217 757.7 451 80.7
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 1.3e-213 746.5 458 79.0
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 9.4e-209 730.3 449 78.8
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.0e-207 726.9 454 77.5
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.3e-207 725.7 450 78.4
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 3.0e-207 725.3 449 78.2
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 7.4e-206 720.7 460 76.5
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 2.2e-205 719.2 437 78.0
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 4.8e-205 718.0 453 75.9
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 4.8e-205 718.0 453 76.2
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 8.2e-205 717.2 452 76.3
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 8.2e-205 717.2 474 75.1
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 1.4e-204 716.5 453 76.4
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 1.4e-204 716.5 425 79.5
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.2e-203 713.4 455 76.3
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.2e-203 713.4 458 75.5
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.2e-203 713.4 456 75.4
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 2.0e-203 712.6 453 77.9
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.6e-203 712.2 448 76.6
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 4.5e-203 711.4 452 76.1
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 4.5e-203 711.4 447 76.5
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 5.9e-203 711.1 453 76.2
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.2e-202 709.1 453 75.9
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 2.2e-202 709.1 471 73.5
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 3.8e-202 708.4 460 75.0
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 3.8e-202 708.4 457 74.2
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 8.5e-202 707.2 465 73.5
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.5e-201 706.4 453 75.7
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.5e-201 706.4 453 75.7
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 1.5e-201 706.4 453 76.2
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 2.5e-201 705.7 453 75.3
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.5e-201 705.7 427 78.9
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.5e-201 704.5 473 74.0
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 7.2e-201 704.1 453 75.7
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 7.2e-201 704.1 453 74.8
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 7.2e-201 704.1 447 75.8
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 7.2e-201 704.1 453 75.7
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.2e-200 703.4 477 73.2
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.6e-200 701.8 453 74.6
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.6e-200 701.8 453 74.6
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 8.0e-200 700.7 436 77.3
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.0e-199 700.3 447 75.8
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.0e-199 700.3 447 75.8
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 1.0e-199 700.3 439 77.0
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.8e-199 699.5 447 75.8
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.8e-199 699.5 447 75.8
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 8.8e-199 697.2 465 73.1
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 1.5e-198 696.4 447 75.4
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 2.6e-198 695.7 438 75.8
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.6e-198 695.7 445 75.3
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 3.3e-198 695.3 436 76.1
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 3.3e-198 695.3 454 74.9
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 5.7e-198 694.5 451 74.5
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 5.7e-198 694.5 454 74.2
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 7.4e-198 694.1 450 75.1
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 9.7e-198 693.7 455 75.4
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 4.8e-197 691.4 467 73.9
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 8.2e-197 690.6 455 72.5
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.8e-196 689.5 458 73.4
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.8e-196 689.5 445 75.7
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 2.4e-196 689.1 450 73.3
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 3.1e-196 688.7 455 74.7
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.3e-196 688.0 452 75.0
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 5.3e-196 688.0 452 74.8
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.6e-195 686.4 460 72.6
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.6e-195 685.6 444 74.5
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 2.6e-195 685.6 439 75.6
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 3.5e-195 685.3 462 70.6
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 3.5e-195 685.3 448 72.8
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 4.5e-195 684.9 459 72.3
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.3e-194 683.3 445 74.4
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 3.8e-194 681.8 453 71.7
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 8.5e-194 680.6 463 72.8
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.9e-193 679.5 463 70.0
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 2.5e-193 679.1 450 72.4
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 3.2e-193 678.7 433 75.8
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 3.2e-193 678.7 459 71.2
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 4.2e-193 678.3 461 72.7
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 5.5e-193 677.9 439 73.6
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 7.2e-193 677.6 464 71.6
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 2.7e-192 675.6 463 71.5
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 2.3e-191 672.5 437 73.7
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 5.2e-191 671.4 431 74.2
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.2e-190 670.2 441 72.8
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 2.6e-190 669.1 435 73.6
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 3.4e-190 668.7 434 73.7
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 5.7e-190 667.9 458 71.0
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 9.8e-190 667.2 458 70.5
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 9.8e-190 667.2 448 72.5
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 1.3e-189 666.8 444 72.3
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.7e-189 666.4 462 70.3
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 6.3e-189 664.5 469 69.5
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 6.3e-189 664.5 443 72.2
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.1e-188 663.7 468 69.7
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.1e-188 663.7 429 74.4
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.4e-188 663.3 439 74.0
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.8e-188 662.9 435 73.1
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.8e-188 662.9 435 73.1
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 7.0e-188 661.0 458 70.3
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.6e-187 659.8 454 71.8
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 2.7e-187 659.1 435 73.6
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 3.5e-187 658.7 416 77.2
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 4.5e-187 658.3 469 69.3
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 4.5e-187 658.3 454 71.4
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 4.5e-187 658.3 431 73.1
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 4.5e-187 658.3 432 73.4
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 5.9e-187 657.9 454 71.4
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 5.9e-187 657.9 446 71.7
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 2.9e-186 655.6 460 69.3
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 5.0e-186 654.8 447 70.2
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 5.0e-186 654.8 459 68.8
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 6.5e-186 654.4 453 68.9
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 4.2e-185 651.7 459 69.1
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 9.4e-185 650.6 466 69.5
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 1.6e-184 649.8 452 69.0
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 4.7e-184 648.3 444 70.7
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 6.1e-184 647.9 452 68.8
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 6.1e-184 647.9 438 71.7
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 6.8e-183 644.4 454 68.5
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 1.2e-182 643.7 455 68.6
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 4.4e-182 641.7 446 70.6
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 8.3e-181 637.5 447 70.0
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 2.4e-180 636.0 408 76.0
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 3.1e-180 635.6 448 67.9
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 9.1e-180 634.0 403 76.7
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 4.5e-179 631.7 465 65.6
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 5.0e-178 628.2 443 69.3
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 6.6e-178 627.9 444 70.3
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.5e-177 626.7 409 73.8
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 4.2e-177 625.2 442 68.3
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 8.9e-175 617.5 384 77.1
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 9.8e-174 614.0 425 72.0
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.4e-172 610.1 446 64.6
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 2.4e-172 609.4 391 77.0
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 4.7e-168 595.1 392 73.5
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 8.9e-167 590.9 365 76.7
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.3e-165 587.0 444 67.1
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 6.4e-165 584.7 389 73.5
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 2.4e-164 582.8 379 74.7
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 2.3e-151 539.7 392 67.9
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.3e-151 539.7 433 64.0
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 7.1e-148 528.1 437 62.2
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.6e-147 526.9 418 62.2
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 8.4e-141 504.6 444 61.3
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.6e-139 498.8 453 56.3
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 9.6e-137 491.1 448 54.9
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 3.1e-135 486.1 286 79.4
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.2e-133 479.9 444 55.9
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 3.8e-117 426.0 313 66.8
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 7.9e-115 418.3 432 50.9
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 2.6e-110 403.3 240 80.0
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.3e-105 386.0 273 68.9
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.6e-104 384.0 448 44.9
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 5.0e-101 372.5 231 75.8
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 2.0e-97 360.5 437 45.1
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 5.0e-93 345.9 381 47.0
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.0e-74 285.0 279 57.0
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 2.7e-70 270.4 158 83.5
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 8.6e-61 238.8 151 76.2
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.0e-45 187.2 113 79.6
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 1.1e-42 178.7 452 31.2
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.8e-42 176.0 127 67.7
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.5e-38 163.7 93 81.7
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 5.1e-37 159.8 443 28.9
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 9.3e-23 112.5 109 56.0
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 1.6e-19 101.7 84 53.6
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 2.4e-15 87.8 79 59.5
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 5.4e-15 86.7 71 56.3
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.2e-09 68.9 197 30.5
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 4.9e-08 63.5 43 69.8
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.1e-07 62.4 43 67.4
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 1.2e-06 58.9 341 23.8


User provided reference genes

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