Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00913 Erythranthe guttata HOM05D007044 ORTHO05D008981 1.5e-276 955.7 513 100.0
SGA_v2.0_scaffold13G06483 Striga asiatica HOM05D007044 ORTHO05D008981 1.7e-179 633.3 515 65.8
SalBow6G1252 Salvia bowleyana HOM05D007044 ORTHO05D008981 4.4e-164 582.0 528 62.5
Oeu063700.1 Olea europaea HOM05D007044 ORTHO05D008981 9.9e-156 554.3 573 54.5
unitig_61.g26193 Utricularia gibba HOM05D007044 ORTHO05D008981 1.2e-153 547.4 550 57.1
Actinidia19938 Actinidia chinensis HOM05D007044 ORTHO05D008981 7.3e-151 538.1 516 57.2
vmacro05323 Vaccinium macrocarpon HOM05D007044 ORTHO05D008981 1.4e-146 523.9 513 56.1
Hma1.2p1_0050F.1_g029110 Hydrangea macrophylla HOM05D007044 ORTHO05D008981 4.6e-145 518.8 497 57.3
Haze_19360 Corylus avellana HOM05D007044 ORTHO05D008981 1.0e-144 517.7 534 52.4
GSVIVG01000252001 Vitis vinifera HOM05D007044 ORTHO05D008981 1.7e-144 516.9 519 55.3
TWI75G1760 Tripterygium wilfordii HOM05D007044 ORTHO05D008981 2.3e-144 516.5 524 54.4
PGR119G1191 Punica granatum HOM05D007044 ORTHO05D008981 1.3e-142 510.8 523 55.3
Cfa020928 Carpinus fangiana HOM05D007044 ORTHO05D008981 1.6e-142 510.4 525 53.0
Gohir.A05G375000 Gossypium hirsutum HOM05D007044 ORTHO05D008981 2.6e-140 503.1 519 54.1
EL10Ac4g09721 Beta vulgaris HOM05D007044 ORTHO05D008981 7.6e-140 501.5 518 55.4
Ca_09906_v3 Cicer arietinum L. HOM05D007044 ORTHO05D008981 9.9e-140 501.1 517 53.6
Gorai.012G045900 Gossypium raimondii HOM05D007044 ORTHO05D008981 2.2e-139 500.0 522 54.0
Carub.0005s2331 Capsella rubella HOM05D007044 ORTHO05D008981 6.4e-139 498.4 532 50.4
Psat6g111960 Pisum sativum HOM05D007044 ORTHO05D008981 8.4e-139 498.0 519 52.8
Ciclev10027575m.g Citrus clementina HOM05D007044 ORTHO05D008981 1.1e-138 497.7 527 54.1
AUR62000601 Chenopodium quinoa HOM05D007044 ORTHO05D008981 3.2e-138 496.1 526 51.9
Duzib147G1221 Durio zibethinus HOM05D007044 ORTHO05D008981 2.1e-137 493.4 517 53.0
Gohir.D04G040700 Gossypium hirsutum HOM05D007044 ORTHO05D008981 2.1e-137 493.4 522 53.6
Lj5g0011072 Lotus japonicus HOM05D007044 ORTHO05D008981 4.6e-137 492.3 511 53.0
CAN.G10.5 Capsicum annuum HOM05D007044 ORTHO05D008981 6.0e-137 491.9 522 53.8
TAR381G1118 Trochodendron aralioides HOM05D007044 ORTHO05D008981 1.0e-136 491.1 519 53.2
AUR62006952 Chenopodium quinoa HOM05D007044 ORTHO05D008981 3.0e-136 489.6 525 51.8
Medtr1g077040 Medicago truncatula HOM05D007044 ORTHO05D008981 3.9e-136 489.2 518 52.9
Manes.13G154300 Manihot esculenta HOM05D007044 ORTHO05D008981 6.6e-136 488.4 521 53.6
Thecc.01G145800 Theobroma cacao HOM05D007044 ORTHO05D008981 6.6e-136 488.4 517 52.4
Phvul.007G114400 Phaseolus vulgaris HOM05D007044 ORTHO05D008981 8.7e-136 488.0 524 51.0
Lj7A490G62 Lonicera japonica HOM05D007044 ORTHO05D008981 3.3e-135 486.1 523 54.3
Dinv05984 Davidia involucrata HOM05D007044 ORTHO05D008981 2.1e-134 483.4 457 58.0
AL5G37940 Arabidopsis lyrata HOM05D007044 ORTHO05D008981 2.8e-134 483.0 518 51.0
TPR.G16624 Trifolium pratense HOM05D007044 ORTHO05D008981 1.1e-133 481.1 540 50.7
VMungo0720G2193 Vigna mungo HOM05D007044 ORTHO05D008981 1.4e-133 480.7 524 51.0
Ah.02g118170 Amaranthus hybridus HOM05D007044 ORTHO05D008981 1.8e-133 480.3 517 53.0
MBI03_g18677_MAGBIO Magnolia biondii HOM05D007044 ORTHO05D008981 4.0e-133 479.2 515 53.6
Sp5g05990 Schrenkiella parvula HOM05D007044 ORTHO05D008981 5.3e-133 478.8 530 50.6
THA.LOC104827319 Tarenaya hassleriana HOM05D007044 ORTHO05D008981 6.9e-133 478.4 511 51.3
Glyma.20G214500 Glycine max HOM05D007044 ORTHO05D008981 1.2e-132 477.6 520 51.3
MELO3C024642.2 Cucumis melo HOM05D007044 ORTHO05D008981 2.0e-132 476.9 496 52.4
Aa31LG10G11390 Aethionema arabicum HOM05D007044 ORTHO05D008981 5.8e-132 475.3 522 51.3
Nitab4.5_0001785g0040 Nicotiana tabacum HOM05D007044 ORTHO05D008981 7.6e-132 474.9 554 50.5
arahy.Tifrunner.gnm1.ann1.H6ML7T Arachis hypogaea HOM05D007044 ORTHO05D008981 9.9e-132 474.6 532 50.9
Lsat_1_v5_gn_2_40340 Lactuca sativa HOM05D007044 ORTHO05D008981 4.9e-131 472.2 495 55.4
Lalb_Chr06g0168751 Lupinus albus HOM05D007044 ORTHO05D008981 6.4e-131 471.9 521 50.7
AT3G56570 Arabidopsis thaliana HOM05D007044 ORTHO05D008981 4.2e-130 469.2 555 48.3
PSO170G6074 Papaver somniferum HOM05D007044 ORTHO05D008981 9.3e-130 468.0 526 50.0
arahy.Tifrunner.gnm1.ann1.B8MN22 Arachis hypogaea HOM05D007044 ORTHO05D008981 2.1e-129 466.8 535 51.2
PSO782G5479 Papaver somniferum HOM05D007044 ORTHO05D008981 5.1e-128 462.2 524 48.3
Aqoxy6G00095 Aquilegia oxysepala HOM05D007044 ORTHO05D008981 6.7e-128 461.8 520 48.5
ClCG04G002800 Citrullus lanatus HOM05D007044 ORTHO05D008981 4.3e-127 459.1 523 50.7
Sed0003346 Sechium edule HOM05D007044 ORTHO05D008981 1.3e-126 457.6 496 51.4
Zm00001eb366280 Zea mays HOM05D007044 ORTHO05D008981 1.4e-125 454.1 517 49.9
FAN26G2478 Fragaria x ananassa HOM05D007044 ORTHO05D008981 2.4e-125 453.4 523 49.7
HPP92_022004 Vanilla planifolia HOM05D007044 ORTHO05D008981 2.4e-125 453.4 519 48.7
Sabra04G0082400 Salix brachista HOM05D007044 ORTHO05D008981 6.9e-125 451.8 439 55.8
ATR1136G039 Amborella trichopoda HOM05D007044 ORTHO05D008981 9.0e-125 451.4 561 46.7
Os01g0879500 Oryza sativa ssp. japonica HOM05D007044 ORTHO05D008981 7.6e-124 448.4 525 47.6
FAN23G2791 Fragaria x ananassa HOM05D007044 ORTHO05D008981 2.1e-121 440.3 518 49.4
FAN19G0897 Fragaria x ananassa HOM05D007044 ORTHO05D008981 1.1e-119 434.5 519 51.4
FvH4_1g25860 Fragaria vesca HOM05D007044 ORTHO05D008981 1.5e-119 434.1 524 51.3
HanXRQChr10g0285851 Helianthus annuus HOM05D007044 ORTHO05D008981 7.4e-119 431.8 439 56.0
SEGI_35790 Sequoiadendron giganteum HOM05D007044 ORTHO05D008981 7.4e-119 431.8 557 46.3
CSS0017775 Camellia sinensis var. sinensis HOM05D007044 ORTHO05D008981 4.8e-118 429.1 441 54.2
C08p31830 Brassica napus HOM05D007044 ORTHO05D008981 1.3e-115 421.0 494 49.6
BraA09t40398Z Brassica rapa HOM05D007044 ORTHO05D008981 2.2e-115 420.2 518 47.7
BcaC07g39965 Brassica carinata HOM05D007044 ORTHO05D008981 2.1e-113 413.7 498 49.8
BolC8t50802H Brassica oleracea HOM05D007044 ORTHO05D008981 1.0e-112 411.4 496 49.8
A09p49450 Brassica napus HOM05D007044 ORTHO05D008981 2.5e-111 406.8 509 47.5
MD00G1030500 Malus domestica HOM05D007044 ORTHO05D008981 2.9e-107 393.3 523 44.6
BcaC07g40141 Brassica carinata HOM05D007044 ORTHO05D008981 2.5e-106 390.2 506 47.4
Hma1.2p1_0050F.1_g029120 Hydrangea macrophylla HOM05D007044 ORTHO05D008981 2.8e-102 376.7 360 57.5
Rhsim10G0120300 Rhododendron simsii HOM05D007044 ORTHO05D008981 3.7e-102 376.3 445 49.0
CiPaw.15G185700 Carya illinoinensis HOM05D007044 ORTHO05D008981 2.0e-100 370.5 386 52.6
Potri.004G135700 Populus trichocarpa HOM05D007044 ORTHO05D008981 1.0e-99 368.2 394 56.1
SMO169G0173 Selaginella moellendorffii HOM05D007044 ORTHO05D008981 1.6e-97 360.9 496 45.8
Hund07191 Selenicereus undatus HOM05D007044 ORTHO05D008981 5.1e-96 355.9 389 54.0
Sc16g0009910 Simmondsia chinensis HOM05D007044 ORTHO05D008981 5.1e-96 355.9 378 51.6
Atru.chr3.1445 Acer truncatum HOM05D007044 ORTHO05D008981 6.7e-96 355.5 384 52.9
Nn3g20178 Nelumbo nucifera HOM05D007044 ORTHO05D008981 2.8e-94 350.1 397 50.4
CARHR166680 Cardamine hirsuta HOM05D007044 ORTHO05D008981 7.7e-92 342.0 400 47.2
ECA240G2444 Erigeron canadensis HOM05D007044 ORTHO05D008981 1.3e-91 341.3 385 52.2
Thhalv10006013m.g Eutrema salsugineum HOM05D007044 ORTHO05D008981 1.5e-90 337.8 389 47.6
Prupe.4G288100 Prunus persica HOM05D007044 ORTHO05D008981 6.1e-89 332.4 416 45.4
CsaV3_4G029950 Cucumis sativus L. HOM05D007044 ORTHO05D008981 1.6e-84 317.8 347 51.0
Pp3c8_4410 Physcomitrium patens HOM05D007044 ORTHO05D008981 4.2e-82 309.7 548 39.4
Mapoly0010s0148 Marchantia polymorpha HOM05D007044 ORTHO05D008981 1.4e-80 304.7 748 31.0
Eucgr.I00024 Eucalyptus grandis HOM05D007044 ORTHO05D008981 2.1e-73 280.8 314 53.8
QL10p037675 Quercus lobata HOM05D007044 ORTHO05D008981 2.1e-73 280.8 314 51.9
PGSC0003DMG400004247 Solanum tuberosum HOM05D007044 ORTHO05D008981 1.4e-64 251.5 209 60.8
QL10p037666 Quercus lobata HOM05D007044 ORTHO05D008981 7.5e-63 245.7 207 60.4
Cpa.g.sc138.45 Carica papaya HOM05D007044 ORTHO05D008981 1.3e-62 245.0 206 60.7
Glyma.10G176100 Glycine max HOM05D007044 ORTHO05D008981 2.9e-62 243.8 281 50.5
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 2.7e-60 237.3 293 47.1
RcHm_v2.0_Chr3g0485001 Rosa chinensis HOM05D007044 ORTHO05D008981 5.6e-58 229.6 301 45.8
AagrBONN_evm.TU.Sc2ySwM_368.1798 Anthoceros agrestis HOM05D007044 ORTHO05D008981 5.4e-53 213.0 396 36.4
CDE06G2742 Ceratophyllum demersum HOM05D007044 ORTHO05D008981 1.2e-52 211.8 195 56.9
MELO3C033209.2 Cucumis melo HOM05D007044 ORTHO05D008981 1.1e-34 152.1 156 53.8
PRCOL_00000171 Prasinoderma coloniale HOM05D007044 ORTHO05D008981 4.3e-34 150.2 471 28.7
MCO15G559 Micromonas commoda HOM05D007044 ORTHO05D008981 1.6e-28 131.7 326 34.7
MCO07G433 Micromonas commoda HOM05D007044 ORTHO05D008981 1.3e-27 128.6 474 26.2
FAN28G0850 Fragaria x ananassa HOM05D007044 ORTHO05D008981 3.9e-27 127.1 288 32.6
MCO12G445 Micromonas commoda HOM05D007044 ORTHO05D008981 1.1e-26 125.6 600 28.0
Cre07.g346418 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 2.5e-26 124.4 211 32.7
CBR_g30110 Chara braunii HOM05D007044 ORTHO05D008981 2.9e-22 110.9 121 46.3
arahy.Tifrunner.gnm1.ann1.8K57QZ Arachis hypogaea HOM05D001339 ORTHO05D008981 8.7e-19 99.4 131 42.0
Cpa.g.sc138.46 Carica papaya HOM05D007044 ORTHO05D008981 1.2e-15 89.0 217 33.2
Mapoly0016s0035 Marchantia polymorpha HOM05D005656 ORTHO05D006437 7.6e-15 86.3 281 24.9
Pp3c22_6390 Physcomitrium patens HOM05D004224 ORTHO05D006437 1.1e-13 82.4 322 23.6
Cre03.g164650 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 4.2e-13 80.5 296 24.3
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 1.2e-12 79.0 55 65.5
PRCOL_00004023 Prasinoderma coloniale HOM05D007044 ORTHO05D044099 1.3e-11 75.5 300 26.0
A02p04080 Brassica napus HOM05D005252 ORTHO05D006788 1.1e-10 72.4 398 23.1
MCO05G022 Micromonas commoda HOM05D007044 ORTHO05D028567 4.3e-10 70.5 310 26.8
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 5.6e-10 70.1 394 22.6
Sp6g26990 Schrenkiella parvula HOM05D005252 ORTHO05D006788 1.3e-09 68.9 349 22.1
BcaC03g18544 Brassica carinata HOM05D005252 ORTHO05D006788 2.1e-09 68.2 394 22.8
Zm00001eb347700 Zea mays HOM05D001443 ORTHO05D001352 2.8e-09 67.8 136 35.3
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 3.7e-09 67.4 394 22.3
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 8.2e-09 66.2 176 26.1
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 8.2e-09 66.2 398 22.6
Actinidia16039 Actinidia chinensis HOM05D007044 ORTHO05D008981 2.4e-08 64.7 121 41.3
BcaB01g00128 Brassica carinata HOM05D005234 ORTHO05D006583 2.4e-08 64.7 281 21.4
MCO12G473 Micromonas commoda HOM05D005456 ORTHO05D006805 2.4e-08 64.7 206 27.7
Pp3c19_10210 Physcomitrium patens HOM05D005234 ORTHO05D006583 3.1e-08 64.3 277 22.4
BcaC07g39833 Brassica carinata HOM05D005234 ORTHO05D006583 4.0e-08 63.9 282 22.3
CARHR195970 Cardamine hirsuta HOM05D005252 ORTHO05D006788 5.3e-08 63.5 351 21.7
Mapoly0065s0091 Marchantia polymorpha HOM05D005456 ORTHO05D006805 5.3e-08 63.5 501 21.6
AUR62032826 Chenopodium quinoa HOM05D005456 ORTHO05D006805 6.9e-08 63.2 158 29.7
Dinv31388 Davidia involucrata HOM05D005234 ORTHO05D006583 9.0e-08 62.8 250 26.0
Aa31LG10G10060 Aethionema arabicum HOM05D005234 ORTHO05D006583 1.2e-07 62.4 252 22.2
BraA09t40265Z Brassica rapa HOM05D005234 ORTHO05D006583 1.2e-07 62.4 281 21.7
Mapoly0146s0042 Marchantia polymorpha HOM05D006247 ORTHO05D007684 1.2e-07 62.4 320 23.8
BolC8t50657H Brassica oleracea HOM05D005234 ORTHO05D006583 1.5e-07 62.0 285 22.8
HPP92_011000 Vanilla planifolia HOM05D005456 ORTHO05D006805 1.5e-07 62.0 157 33.8
Ah.02g129440 Amaranthus hybridus HOM05D005456 ORTHO05D006805 3.4e-07 60.8 170 27.6
AagrBONN_evm.TU.Sc2ySwM_117.653 Anthoceros agrestis HOM05D006247 ORTHO05D007684 3.4e-07 60.8 309 23.3
Lalb_Chr06g0164091 Lupinus albus HOM05D005234 ORTHO05D006583 3.4e-07 60.8 320 22.5
AUR62005833 Chenopodium quinoa HOM05D005456 ORTHO05D006805 4.5e-07 60.5 158 29.1
Medtr1g115980 Medicago truncatula HOM05D005234 ORTHO05D006583 4.5e-07 60.5 302 21.9
SalBow4G2780 Salvia bowleyana HOM05D005234 ORTHO05D006583 4.5e-07 60.5 321 23.7
PRCOL_00001538 Prasinoderma coloniale HOM05D007044 ORTHO05D028567 5.8e-07 60.1 238 23.1
Ca_08719_v3 Cicer arietinum L. HOM05D005456 ORTHO05D006805 7.6e-07 59.7 169 32.0
GSVIVG01032632001 Vitis vinifera HOM05D005234 ORTHO05D006583 7.6e-07 59.7 288 25.3
Eucgr.J01148 Eucalyptus grandis HOM05D005234 ORTHO05D006583 1.0e-06 59.3 321 22.1
Mapoly0068s0008 Marchantia polymorpha HOM05D005234 ORTHO05D006583 1.0e-06 59.3 260 21.9
Cfa001561 Carpinus fangiana HOM05D005234 ORTHO05D006583 1.3e-06 58.9 500 22.2
Sc04g0007920 Simmondsia chinensis HOM05D005456 ORTHO05D006805 1.3e-06 58.9 164 28.7
Dinv16685 Davidia involucrata HOM05D005456 ORTHO05D006805 2.2e-06 58.2 158 28.5
Psat6g238640 Pisum sativum HOM05D005234 ORTHO05D006583 2.2e-06 58.2 250 22.4
THA.LOC104809996 Tarenaya hassleriana HOM05D005234 ORTHO05D006583 2.2e-06 58.2 318 22.3
CBR_g3670 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-06 57.4 115 36.5
Eucgr.G02479 Eucalyptus grandis HOM05D005456 ORTHO05D006805 3.8e-06 57.4 166 30.7
FAN22G2029 Fragaria x ananassa HOM05D005456 ORTHO05D006805 3.8e-06 57.4 161 26.7
Cc02_g08680 Coffea canephora HOM05D005234 ORTHO05D006583 4.9e-06 57.0 243 22.6
FAN07G2817 Fragaria x ananassa HOM05D005456 ORTHO05D006805 4.9e-06 57.0 206 25.2
FAN12G1233 Fragaria x ananassa HOM05D005456 ORTHO05D006805 4.9e-06 57.0 206 25.2
Glyma.10G292500 Glycine max HOM05D005234 ORTHO05D006583 4.9e-06 57.0 283 21.2
DCAR_030997 Daucus carota HOM05D005456 ORTHO05D006805 6.5e-06 56.6 189 24.9
Pp3c3_17260 Physcomitrium patens HOM05D005456 ORTHO05D006805 6.5e-06 56.6 196 25.5
A09p62550 Brassica napus HOM05D005456 ORTHO05D006805 8.4e-06 56.2 192 27.1
TPR.G10401 Trifolium pratense HOM05D005234 ORTHO05D006583 8.4e-06 56.2 307 20.2


User provided reference genes

Program Settings