Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.8e-268 928.7 473 100.0
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 2.6e-227 792.0 474 84.4
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.3e-218 763.1 472 82.2
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 1.4e-209 733.0 472 79.0
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.2e-203 713.4 474 75.9
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 2.2e-202 709.1 475 77.7
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 2.7e-200 702.2 474 75.3
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 2.3e-199 699.1 474 74.9
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 4.3e-198 694.9 474 74.7
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 7.4e-198 694.1 478 74.9
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 9.6e-198 693.7 473 75.7
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.3e-197 693.3 474 74.9
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 3.7e-197 691.8 470 74.9
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 1.8e-196 689.5 478 73.8
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 2.4e-196 689.1 475 73.9
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 2.0e-195 686.0 390 87.9
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 6.4e-194 681.0 481 73.4
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.1e-193 680.2 475 74.3
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.4e-193 679.9 471 73.9
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 1.2e-192 676.8 397 84.1
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 2.7e-192 675.6 440 78.0
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 6.0e-192 674.5 471 73.2
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 5.1e-191 671.4 435 78.9
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 1.5e-190 669.8 440 76.6
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 3.3e-190 668.7 412 81.1
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 3.3e-190 668.7 419 79.5
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 5.6e-190 667.9 423 78.5
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 7.4e-190 667.5 443 77.2
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 7.4e-190 667.5 419 79.0
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.6e-189 666.4 419 78.8
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 1.6e-189 666.4 440 76.8
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.6e-189 666.4 473 73.4
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 2.1e-189 666.0 473 72.5
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 6.2e-189 664.5 423 78.0
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.1e-188 663.7 471 72.2
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.4e-188 663.3 434 76.0
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 1.8e-188 662.9 443 76.3
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 4.0e-188 661.8 438 75.8
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 4.0e-188 661.8 475 71.6
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 6.9e-188 661.0 475 71.8
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 9.0e-188 660.6 396 82.8
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 9.0e-188 660.6 421 77.4
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 9.0e-188 660.6 477 72.3
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.2e-187 660.2 385 83.6
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 7.6e-187 657.5 440 75.0
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 1.0e-186 657.1 471 72.2
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 1.0e-186 657.1 394 82.2
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 1.3e-186 656.8 415 79.0
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.7e-186 656.4 434 75.8
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 4.9e-186 654.8 383 83.6
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 4.9e-186 654.8 438 75.6
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 4.9e-186 654.8 466 73.0
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 6.5e-186 654.4 466 71.7
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.4e-186 654.1 439 74.9
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 8.4e-186 654.1 437 75.5
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.1e-185 653.7 439 74.9
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.1e-185 653.7 433 76.0
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 2.5e-185 652.5 434 75.3
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 2.5e-185 652.5 389 83.3
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 4.2e-185 651.7 407 79.9
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 9.3e-185 650.6 420 77.9
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.2e-184 650.2 457 74.0
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.6e-184 649.8 438 75.1
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.1e-184 649.4 471 70.9
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.1e-184 649.4 439 74.5
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 3.5e-184 648.7 438 74.9
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 6.0e-184 647.9 400 81.0
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 6.0e-184 647.9 384 83.3
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 6.0e-184 647.9 535 65.2
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.0e-183 647.1 422 76.3
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.0e-183 647.1 472 71.2
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 1.3e-183 646.7 393 80.4
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.9e-183 645.2 467 71.9
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 8.7e-183 644.0 464 71.1
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 1.1e-182 643.7 475 70.9
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 1.1e-182 643.7 395 80.5
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 2.5e-182 642.5 384 81.5
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 4.3e-182 641.7 396 80.8
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 5.7e-182 641.3 441 73.2
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.7e-182 641.3 393 79.6
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 2.8e-181 639.0 435 74.3
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 6.3e-181 637.9 381 81.6
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 6.3e-181 637.9 393 78.9
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.3e-181 637.9 393 78.6
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 1.4e-180 636.7 389 80.2
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 1.4e-180 636.7 414 76.6
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 2.4e-180 636.0 408 75.5
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.1e-180 635.6 393 78.1
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 4.1e-180 635.2 413 77.0
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 5.3e-180 634.8 385 80.5
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.2e-179 633.6 385 80.8
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 7.6e-179 630.9 389 79.2
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 2.9e-178 629.0 387 79.8
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 5.0e-178 628.2 386 79.0
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 1.4e-177 626.7 386 79.8
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 9.3e-177 624.0 385 79.7
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 6.1e-176 621.3 475 68.6
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 7.9e-176 620.9 393 77.4
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 1.3e-175 620.2 393 77.4
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 6.7e-175 617.8 393 78.1
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.0e-170 604.0 372 78.2
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 3.8e-170 602.1 417 71.5
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 4.2e-169 598.6 389 74.0
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 9.4e-169 597.4 392 76.3
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 8.8e-167 590.9 416 70.7
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 5.2e-159 565.1 472 64.8
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 7.7e-155 551.2 376 73.1
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.9e-153 546.6 356 73.6
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 7.0e-148 528.1 473 61.5
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.6e-147 526.9 385 68.6
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 1.0e-146 524.2 438 63.7
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.9e-145 520.0 473 60.9
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.9e-145 520.0 433 60.0
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 3.7e-141 505.8 344 75.0
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 3.1e-140 502.7 373 66.8
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 1.0e-135 487.6 445 59.3
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 6.3e-133 478.4 396 59.6
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 8.3e-133 478.0 357 67.2
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 4.1e-132 475.7 370 62.2
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.5e-129 466.5 275 81.5
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 4.7e-128 462.2 361 63.7
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 2.4e-124 449.9 276 77.9
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.2e-120 437.6 289 72.7
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 6.2e-120 435.3 258 81.4
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.1e-112 410.2 309 67.6
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 5.2e-111 405.6 252 79.0
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 5.8e-110 402.1 289 71.3
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 6.8e-103 378.6 345 62.3
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 8.9e-103 378.3 266 72.6
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 1.0e-98 364.8 251 75.3
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 6.6e-98 362.1 211 84.8
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 6.9e-95 352.1 356 51.4
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 2.7e-91 340.1 330 50.9
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 2.3e-90 337.0 218 76.6
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 2.4e-87 327.0 226 73.9
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 4.0e-87 326.2 201 78.1
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 4.3e-73 279.6 211 64.5
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.1e-71 273.5 174 76.4
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 6.7e-66 255.8 167 74.9
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 4.5e-62 243.0 124 90.3
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 2.2e-61 240.7 176 66.5
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 3.2e-60 236.9 349 40.7
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 4.6e-59 233.0 136 84.6
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 1.0e-58 231.9 176 65.3
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 1.1e-55 221.9 291 43.0
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 1.1e-47 195.3 134 73.1
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 1.1e-39 168.7 118 74.6
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 1.2e-38 165.2 112 78.6
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 8.0e-35 152.5 85 82.4
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 5.7e-33 146.4 123 63.4
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.6e-30 138.3 77 89.6
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 5.0e-21 106.7 116 54.3
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 6.6e-21 106.3 90 62.2
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 6.6e-21 106.3 84 67.9
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 6.8e-18 96.3 60 88.3
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 2.8e-16 90.9 68 66.2
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 8.3e-16 89.4 60 81.7
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 2.0e-14 84.7 58 58.6
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 3.5e-14 84.0 50 76.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 1.8e-10 71.6 44 75.0
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 2.7e-06 57.8 220 25.0


User provided reference genes

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