Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00873 Erythranthe guttata HOM05D001231 ORTHO05D001012 5.8e-35 150.2 69 100.0
Actinidia39325 Actinidia chinensis HOM05D001231 ORTHO05D001012 1.3e-10 69.3 56 48.2
Phvul.002G278700 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 1.3e-10 69.3 55 50.9
SGA_v2.0_scaffold7G03620 Striga asiatica HOM05D000870 ORTHO05D000715 1.3e-10 69.3 52 51.9
MD05G1234800 Malus domestica HOM05D001231 ORTHO05D001012 2.9e-10 68.2 63 42.9
Gohir.D02G139400 Gossypium hirsutum HOM05D001231 ORTHO05D001012 6.4e-10 67.0 49 51.0
Gorai.005G157500 Gossypium raimondii HOM05D001231 ORTHO05D001012 6.4e-10 67.0 49 51.0
RcHm_v2.0_Chr5g0024081 Rosa chinensis HOM05D001231 ORTHO05D001012 1.4e-09 65.9 53 45.3
Migut.H01662 Erythranthe guttata HOM05D001231 ORTHO05D001012 1.9e-09 65.5 67 43.3
SalBow7G0339 Salvia bowleyana HOM05D001231 ORTHO05D001012 1.9e-09 65.5 58 50.0
Migut.M01517 Erythranthe guttata HOM05D001231 ORTHO05D001012 2.4e-09 65.1 52 46.2
Eucgr.F03380 Eucalyptus grandis HOM05D001231 ORTHO05D001012 2.4e-09 65.1 53 45.3
CANSAT54G0755 Cannabis sativa HOM05D001231 ORTHO05D001012 3.2e-09 64.7 50 44.0
Gohir.A03G115800 Gossypium hirsutum HOM05D001231 ORTHO05D001012 3.2e-09 64.7 49 49.0
SalBow8G3771 Salvia bowleyana HOM05D001231 ORTHO05D001012 3.2e-09 64.7 52 51.9
Nn7g38190 Nelumbo nucifera HOM05D001231 ORTHO05D001012 4.2e-09 64.3 52 46.2
Nn7g38263 Nelumbo nucifera HOM05D001231 ORTHO05D001012 4.2e-09 64.3 53 43.4
Carub.0004s1326 Capsella rubella HOM05D001231 ORTHO05D001012 5.4e-09 63.9 58 44.8
EL10Ac5g10885 Beta vulgaris HOM05D001231 ORTHO05D001012 7.1e-09 63.5 50 48.0
Nitab4.5_0000374g0060 Nicotiana tabacum HOM05D001231 ORTHO05D001012 7.1e-09 63.5 50 48.0
Prupe.4G131400 Prunus persica HOM05D001231 ORTHO05D001012 7.1e-09 63.5 58 44.8
arahy.Tifrunner.gnm1.ann1.UPL4LC Arachis hypogaea HOM05D001231 ORTHO05D001012 9.3e-09 63.2 53 43.4
BcaC09g49338 Brassica carinata HOM05D001231 ORTHO05D001012 1.2e-08 62.8 50 46.0
A01p29870 Brassica napus HOM05D001231 ORTHO05D001012 1.2e-08 62.8 50 46.0
C01p37750 Brassica napus HOM05D001231 ORTHO05D001012 1.2e-08 62.8 50 46.0
BolC1t03737H Brassica oleracea HOM05D001231 ORTHO05D001012 1.2e-08 62.8 50 46.0
BraA01t03115Z Brassica rapa HOM05D001231 ORTHO05D001012 1.2e-08 62.8 50 46.0
CAN.G282.87 Capsicum annuum HOM05D001231 ORTHO05D001012 1.2e-08 62.8 50 50.0
Nitab4.5_0001882g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.2e-08 62.8 53 49.1
Psat4g112360 Pisum sativum HOM05D001231 ORTHO05D001012 1.2e-08 62.8 50 46.0
BcaB04g20312 Brassica carinata HOM05D001231 ORTHO05D001012 1.6e-08 62.4 50 46.0
CARHR144790 Cardamine hirsuta HOM05D001231 ORTHO05D001012 1.6e-08 62.4 51 45.1
Psat4g112240 Pisum sativum HOM05D001231 ORTHO05D001012 1.6e-08 62.4 50 48.0
RcHm_v2.0_Chr5g0024091 Rosa chinensis HOM05D001231 ORTHO05D001012 1.6e-08 62.4 54 40.7
MD13G1011700 Malus domestica HOM05D001231 ORTHO05D001012 2.1e-08 62.0 49 49.0
Duzib248G1477 Durio zibethinus HOM05D001231 ORTHO05D001012 2.7e-08 61.6 49 44.9
Thhalv10023787m.g Eutrema salsugineum HOM05D001231 ORTHO05D001012 2.7e-08 61.6 49 46.9
Sc20g0000730 Simmondsia chinensis HOM05D001231 ORTHO05D001012 2.7e-08 61.6 49 44.9
Gohir.A03G115938 Gossypium hirsutum HOM05D001231 ORTHO05D001012 3.5e-08 61.2 48 47.9
MD13G1011800 Malus domestica HOM05D001231 ORTHO05D001012 3.5e-08 61.2 49 49.0
MD13G1012000 Malus domestica HOM05D001231 ORTHO05D001012 3.5e-08 61.2 49 49.0
Nitab4.5_0009181g0010 Nicotiana tabacum HOM05D001231 ORTHO05D001012 3.5e-08 61.2 50 46.0
SalBow8G2299 Salvia bowleyana HOM05D001231 ORTHO05D001012 3.5e-08 61.2 50 50.0
SalBow8G3014 Salvia bowleyana HOM05D001231 ORTHO05D001012 3.5e-08 61.2 50 50.0
EL10Ac5g10884 Beta vulgaris HOM05D001231 ORTHO05D001012 4.6e-08 60.8 50 46.0
Carub.0002s0412 Capsella rubella HOM05D001231 ORTHO05D001012 4.6e-08 60.8 49 46.9
Nitab4.5_0003765g0030 Nicotiana tabacum HOM05D009059 ORTHO05D011207 4.6e-08 60.8 45 55.6
arahy.Tifrunner.gnm1.ann1.4H5G59 Arachis hypogaea HOM05D001231 ORTHO05D001012 6.0e-08 60.5 53 41.5
CARHR144760 Cardamine hirsuta HOM05D001231 ORTHO05D001012 6.0e-08 60.5 49 44.9
Migut.H01661 Erythranthe guttata HOM05D001231 ORTHO05D001012 6.0e-08 60.5 51 47.1
FAN16G1567 Fragaria x ananassa HOM05D001231 ORTHO05D001012 6.0e-08 60.5 54 40.7
Nn7g38191 Nelumbo nucifera HOM05D001231 ORTHO05D001012 6.0e-08 60.5 53 41.5
AL8G14820 Arabidopsis lyrata HOM05D001231 ORTHO05D001012 7.9e-08 60.1 51 47.1
Medtr8g075980 Medicago truncatula HOM05D001231 ORTHO05D001012 7.9e-08 60.1 49 44.9
SalBow1G2431 Salvia bowleyana HOM05D001231 ORTHO05D001012 7.9e-08 60.1 49 51.0
arahy.Tifrunner.gnm1.ann1.IDU4K1 Arachis hypogaea HOM05D001231 ORTHO05D001012 1.0e-07 59.7 50 42.0
FAN25G0988 Fragaria x ananassa HOM05D001231 ORTHO05D001012 1.0e-07 59.7 53 37.7
Glyma.08G005300 Glycine max HOM05D001231 ORTHO05D001012 1.0e-07 59.7 55 43.6
Gohir.A01G033900 Gossypium hirsutum HOM05D001231 ORTHO05D001012 1.0e-07 59.7 48 39.6
Medtr8g070790 Medicago truncatula HOM05D001231 ORTHO05D001012 1.0e-07 59.7 50 44.0
Sopen04g028660 Solanum pennellii HOM05D001231 ORTHO05D001012 1.0e-07 59.7 54 38.9
Migut.E00740 Erythranthe guttata HOM05D001231 ORTHO05D001012 1.3e-07 59.3 52 38.5
Thhalv10017942m.g Eutrema salsugineum HOM05D001231 ORTHO05D001012 1.3e-07 59.3 47 48.9
Gohir.D01G023523 Gossypium hirsutum HOM05D001231 ORTHO05D001012 1.3e-07 59.3 48 39.6
MD02G1301000 Malus domestica HOM05D001231 ORTHO05D001012 1.3e-07 59.3 50 42.0
MD12G1121400 Malus domestica HOM05D001231 ORTHO05D001012 1.3e-07 59.3 51 49.0
Peaxi162Scf00376g00828 Petunia axillaris HOM05D001231 ORTHO05D001012 1.3e-07 59.3 55 36.4
Psat4g112280 Pisum sativum HOM05D001231 ORTHO05D001012 1.3e-07 59.3 50 42.0
PGSC0003DMG400030677 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.3e-07 59.3 54 38.9
Cc06_g07890 Coffea canephora HOM05D001231 ORTHO05D001012 1.8e-07 58.9 50 42.0
MD16G1009000 Malus domestica HOM05D001231 ORTHO05D001012 1.8e-07 58.9 50 42.0
C02p38770 Brassica napus HOM05D001231 ORTHO05D001012 2.3e-07 58.5 47 44.7
Gohir.A01G033800 Gossypium hirsutum HOM05D001231 ORTHO05D001012 2.3e-07 58.5 47 44.7
Gohir.D01G023520 Gossypium hirsutum HOM05D001231 ORTHO05D001012 2.3e-07 58.5 47 44.7
Gohir.D01G023526 Gossypium hirsutum HOM05D001231 ORTHO05D001012 2.3e-07 58.5 47 44.7
Gorai.002G029600 Gossypium raimondii HOM05D001231 ORTHO05D001012 2.3e-07 58.5 48 39.6
Gorai.002G029700 Gossypium raimondii HOM05D001231 ORTHO05D001012 2.3e-07 58.5 47 44.7
HanXRQChr12g0365811 Helianthus annuus HOM05D001231 ORTHO05D001012 2.3e-07 58.5 49 40.8
SGA_v2.0_scaffold49G18198 Striga asiatica HOM05D001231 ORTHO05D001012 2.3e-07 58.5 55 40.0
Gorai.002G029500 Gossypium raimondii HOM05D001231 ORTHO05D001012 3.0e-07 58.2 47 42.6
Lalb_Chr12g0206491 Lupinus albus HOM05D001231 ORTHO05D001012 3.0e-07 58.2 52 44.2
Manes.05G122400 Manihot esculenta HOM05D001231 ORTHO05D001012 3.0e-07 58.2 49 42.9
Manes.18G077612 Manihot esculenta HOM05D001231 ORTHO05D001012 3.0e-07 58.2 50 40.0
Medtr3g032570 Medicago truncatula HOM05D001231 ORTHO05D001012 3.0e-07 58.2 53 39.6
Nn7g38192 Nelumbo nucifera HOM05D001231 ORTHO05D001012 3.0e-07 58.2 48 43.8
Peaxi162Scf00088g01110 Petunia axillaris HOM05D001231 ORTHO05D001012 3.0e-07 58.2 50 42.0
Phvul.009G158101 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 3.0e-07 58.2 51 39.2
Prupe.1G341700 Prunus persica HOM05D001231 ORTHO05D001012 3.0e-07 58.2 47 42.6
PGR102G0532 Punica granatum HOM05D001231 ORTHO05D001012 3.0e-07 58.2 49 40.8
Solyc07g007730.4 Solanum lycopersicum HOM05D001231 ORTHO05D001012 3.0e-07 58.2 53 37.7
Sopen07g001060 Solanum pennellii HOM05D001231 ORTHO05D001012 3.0e-07 58.2 53 37.7
TPR.G29340 Trifolium pratense HOM05D001231 ORTHO05D001012 3.0e-07 58.2 53 39.6
Hma1.2p1_0334F.1_g128480 Hydrangea macrophylla HOM05D001231 ORTHO05D001012 3.9e-07 57.8 52 40.4
PGSC0003DMG400015129 Solanum tuberosum HOM05D001231 ORTHO05D001012 3.9e-07 57.8 49 40.8
EL10Ac5g10882 Beta vulgaris HOM05D001231 ORTHO05D001012 5.1e-07 57.4 50 40.0
CANSAT78G0503 Cannabis sativa HOM05D001231 ORTHO05D001012 5.1e-07 57.4 50 44.0
CAN.G976.1 Capsicum annuum HOM05D001231 ORTHO05D001012 5.1e-07 57.4 50 42.0
Gohir.A05G375500 Gossypium hirsutum HOM05D001231 ORTHO05D001012 5.1e-07 57.4 49 40.8
Gohir.D04G040300 Gossypium hirsutum HOM05D001231 ORTHO05D001012 5.1e-07 57.4 49 40.8
Gorai.012G045400 Gossypium raimondii HOM05D001231 ORTHO05D001012 5.1e-07 57.4 49 40.8
Manes.07G074400 Manihot esculenta HOM05D001231 ORTHO05D001012 5.1e-07 57.4 49 40.8
Nitab4.5_0001882g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 5.1e-07 57.4 49 49.0
Psat7g040440 Pisum sativum HOM05D001231 ORTHO05D001012 5.1e-07 57.4 51 43.1
RcHm_v2.0_Chr4g0445791 Rosa chinensis HOM05D001231 ORTHO05D001012 5.1e-07 57.4 50 40.0
RcHm_v2.0_Chr4g0445851 Rosa chinensis HOM05D001231 ORTHO05D001012 5.1e-07 57.4 50 40.0
SalBow8G2012 Salvia bowleyana HOM05D001231 ORTHO05D001012 5.1e-07 57.4 49 46.9
SalBow8G5419 Salvia bowleyana HOM05D001231 ORTHO05D001012 5.1e-07 57.4 49 46.9
C03p57970 Brassica napus HOM05D001231 ORTHO05D001012 6.7e-07 57.0 47 46.8
Eucgr.B02620 Eucalyptus grandis HOM05D001231 ORTHO05D001012 6.7e-07 57.0 49 40.8
FvH4_3g14600 Fragaria vesca HOM05D001231 ORTHO05D001012 6.7e-07 57.0 53 35.8
FAN11G1290 Fragaria x ananassa HOM05D001231 ORTHO05D001012 6.7e-07 57.0 53 35.8
FAN16G3645 Fragaria x ananassa HOM05D001231 ORTHO05D001012 6.7e-07 57.0 53 35.8
Glyma.06G160300 Glycine max HOM05D001231 ORTHO05D001012 6.7e-07 57.0 53 39.6
MD11G1108400 Malus domestica HOM05D001231 ORTHO05D001012 6.7e-07 57.0 49 46.9
Medtr3g097420 Medicago truncatula HOM05D001231 ORTHO05D001012 6.7e-07 57.0 51 39.2
Peaxi162Scf00088g01111 Petunia axillaris HOM05D001231 ORTHO05D001012 6.7e-07 57.0 49 42.9
Solyc07g007750.3 Solanum lycopersicum HOM05D001231 ORTHO05D001012 6.7e-07 57.0 49 40.8
Sopen07g001030 Solanum pennellii HOM05D001231 ORTHO05D001012 6.7e-07 57.0 49 40.8
CANSAT78G1068 Cannabis sativa HOM05D001231 ORTHO05D001012 8.7e-07 56.6 50 46.0
Migut.E00476 Erythranthe guttata HOM05D001231 ORTHO05D001012 8.7e-07 56.6 49 40.8
MD02G1207600 Malus domestica HOM05D001231 ORTHO05D001012 8.7e-07 56.6 49 46.9
MD14G1073000 Malus domestica HOM05D001231 ORTHO05D001012 8.7e-07 56.6 49 46.9
Os03g0130300 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 8.7e-07 56.6 50 42.0
Prupe.7G070800 Prunus persica HOM05D001231 ORTHO05D001012 8.7e-07 56.6 51 41.2
Prupe.7G070900 Prunus persica HOM05D001231 ORTHO05D001012 8.7e-07 56.6 51 41.2
EL10Ac5g10883 Beta vulgaris HOM05D001231 ORTHO05D001012 1.1e-06 56.2 50 42.0
C05p21990 Brassica napus HOM05D001231 ORTHO05D001012 1.1e-06 56.2 47 42.6
Migut.J01199 Erythranthe guttata HOM05D001231 ORTHO05D001012 1.1e-06 56.2 49 42.9
FvH4_3g14620 Fragaria vesca HOM05D001231 ORTHO05D001012 1.1e-06 56.2 50 42.0
Os02g0172000 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 1.1e-06 56.2 62 38.7
Prupe.7G073300 Prunus persica HOM05D001231 ORTHO05D001012 1.1e-06 56.2 51 41.2
SGA_v2.0_scaffold23G10223 Striga asiatica HOM05D001231 ORTHO05D001012 1.1e-06 56.2 45 44.4
AL5G11370 Arabidopsis lyrata HOM05D001231 ORTHO05D001012 1.5e-06 55.8 49 38.8
Prupe.7G071400 Prunus persica HOM05D001231 ORTHO05D001012 1.5e-06 55.8 58 43.1
Prupe.1G341500 Prunus persica HOM05D001231 ORTHO05D001012 1.9e-06 55.5 50 40.0
RcHm_v2.0_Chr4g0445801 Rosa chinensis HOM05D001231 ORTHO05D001012 1.9e-06 55.5 50 38.0
AT2G02120 Arabidopsis thaliana HOM05D001231 ORTHO05D001012 2.5e-06 55.1 49 38.8
HanXRQChr02g0051881 Helianthus annuus HOM05D001231 ORTHO05D001012 2.5e-06 55.1 49 40.8
Os02g0172300 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 2.5e-06 55.1 54 37.0
SalBow8G0100 Salvia bowleyana HOM05D001231 ORTHO05D001012 2.5e-06 55.1 49 38.8
SalBow8G5093 Salvia bowleyana HOM05D001231 ORTHO05D001012 2.5e-06 55.1 49 38.8
Hund02692 Selenicereus undatus HOM05D001231 ORTHO05D001012 2.5e-06 55.1 50 40.0
unitig_22.g5598 Utricularia gibba HOM05D001231 ORTHO05D001012 2.5e-06 55.1 49 38.8
arahy.Tifrunner.gnm1.ann1.IS2QLD Arachis hypogaea HOM05D001231 ORTHO05D001012 3.3e-06 54.7 48 39.6
MSTRG.2131 Avicennia marina HOM05D001231 ORTHO05D001012 3.3e-06 54.7 50 40.0
BolC5t30895H Brassica oleracea HOM05D001231 ORTHO05D001012 3.3e-06 54.7 47 40.4
Lsat_1_v5_gn_0_7960 Lactuca sativa HOM05D019035 ORTHO05D001012 3.3e-06 54.7 49 42.9
Lalb_Chr22g0357361 Lupinus albus HOM05D001231 ORTHO05D001012 3.3e-06 54.7 51 43.1
MD11G1113600 Malus domestica HOM05D001231 ORTHO05D001012 3.3e-06 54.7 49 44.9
Os04g0189400 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 3.3e-06 54.7 50 40.0
Migut.E00742 Erythranthe guttata HOM05D001231 ORTHO05D001012 4.3e-06 54.3 41 46.3
Migut.L00621 Erythranthe guttata HOM05D001231 ORTHO05D001012 4.3e-06 54.3 49 40.8
FvH4_3g40491 Fragaria vesca HOM05D001231 ORTHO05D001012 4.3e-06 54.3 49 40.8
Aa31LG2G7820 Aethionema arabicum HOM05D001231 ORTHO05D001012 5.6e-06 53.9 50 38.0
CAN.G584.62 Capsicum annuum HOM05D009059 ORTHO05D011207 5.6e-06 53.9 45 46.7
CAN.G584.63 Capsicum annuum HOM05D009059 ORTHO05D011207 5.6e-06 53.9 45 46.7
RcHm_v2.0_Chr4g0445781 Rosa chinensis HOM05D001231 ORTHO05D001012 5.6e-06 53.9 50 36.0
Aa31LG4G12330 Aethionema arabicum HOM05D001231 ORTHO05D001012 7.4e-06 53.5 49 36.7
RcHm_v2.0_Chr2g0115151 Rosa chinensis HOM05D001231 ORTHO05D001012 7.4e-06 53.5 47 42.6
Solyc07g150108.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 7.4e-06 53.5 46 43.5
SGA_v2.0_scaffold12G06011 Striga asiatica HOM05D014413 ORTHO05D001012 7.4e-06 53.5 68 36.8
HanXRQChr05g0147931 Helianthus annuus HOM05D019035 ORTHO05D001012 9.6e-06 53.1 49 38.8


User provided reference genes

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