Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 9.0e-30 133.3 85 100.0
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 5.1e-17 90.9 65 75.4
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 9.7e-16 86.7 61 78.7
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.6e-15 85.9 61 78.7
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 3.7e-15 84.7 64 71.9
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 3.7e-15 84.7 58 81.0
SalBow6G2037 Salvia bowleyana HOM05D007506 ORTHO05D008409 6.3e-15 84.0 56 78.6
Solyc11g006750.1 Solanum lycopersicum HOM05D007506 ORTHO05D008409 1.4e-14 82.8 57 77.2
Oeu024806.1 Olea europaea HOM05D007506 ORTHO05D008409 3.1e-14 81.6 62 69.4
Oeu027974.1 Olea europaea HOM05D007506 ORTHO05D008409 6.9e-14 80.5 58 77.6
Sopen11g002680 Solanum pennellii HOM05D007506 ORTHO05D008409 6.9e-14 80.5 57 75.4
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 3.4e-13 78.2 56 76.8
PGSC0003DMG400023979 Solanum tuberosum HOM05D007506 ORTHO05D008409 5.9e-13 77.4 57 71.9
Peaxi162Scf00125g00216 Petunia axillaris HOM05D007506 ORTHO05D008409 1.0e-12 76.6 58 67.2
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 1.0e-12 76.6 66 71.2
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 1.3e-12 76.3 65 70.8
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 2.9e-12 75.1 63 71.4
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 2.9e-12 75.1 65 66.2
CAN.G1373.1 Capsicum annuum HOM05D007506 ORTHO05D008409 5.0e-12 74.3 58 70.7
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 5.0e-12 74.3 66 65.2
Hma1.2p1_0756F.1_g213210 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 1.4e-11 72.8 58 69.0
Hma1.2p1_0756F.1_g213215 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 1.4e-11 72.8 58 69.0
Hma1.2p1_1491F.1_g286710 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 1.4e-11 72.8 58 69.0
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 5.5e-11 70.9 65 69.2
Nitab4.5_0015562g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 7.2e-11 70.5 52 71.2
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 7.2e-11 70.5 64 65.6
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 7.2e-11 70.5 64 60.9
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 1.6e-10 69.3 65 61.5
PGSC0003DMG400023393 Solanum tuberosum HOM05D007506 ORTHO05D008409 1.6e-10 69.3 60 70.0
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 4.6e-10 67.8 64 59.4
EL10Ac4g08692 Beta vulgaris HOM05D007506 ORTHO05D008409 6.1e-10 67.4 70 61.4
unitig_899.g14468 Utricularia gibba HOM05D007506 ORTHO05D008409 6.1e-10 67.4 42 83.3
Dinv02210 Davidia involucrata HOM05D007506 ORTHO05D008409 7.9e-10 67.0 55 63.6
MBI17_g08330_MAGBIO Magnolia biondii HOM05D007506 ORTHO05D008409 7.9e-10 67.0 63 61.9
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 1.0e-09 66.6 61 62.3
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 1.0e-09 66.6 62 64.5
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 1.4e-09 66.2 71 57.7
AUR62042085 Chenopodium quinoa HOM05D007506 ORTHO05D008409 2.3e-09 65.5 66 63.6
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 2.3e-09 65.5 60 63.3
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 2.3e-09 65.5 65 63.1
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 3.9e-09 64.7 69 60.9
Solyc05g055250.2 Solanum lycopersicum HOM05D007506 ORTHO05D008409 3.9e-09 64.7 60 65.0
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 5.1e-09 64.3 65 63.1
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 1.1e-08 63.2 57 63.2
SGA_v2.0_scaffold62G21316 Striga asiatica HOM05D007506 ORTHO05D008409 1.1e-08 63.2 54 64.8
VMungo0720G0153 Vigna mungo HOM05D007506 ORTHO05D008409 1.1e-08 63.2 65 61.5
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 1.5e-08 62.8 66 62.1
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 1.5e-08 62.8 56 66.1
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 1.5e-08 62.8 71 54.9
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 1.5e-08 62.8 62 59.7
CDE12G0642 Ceratophyllum demersum HOM05D007506 ORTHO05D008409 1.9e-08 62.4 63 54.0
MELO3C019903.2 Cucumis melo HOM05D007506 ORTHO05D008409 1.9e-08 62.4 57 63.2
Phvul.007G023500 Phaseolus vulgaris HOM05D007506 ORTHO05D008409 1.9e-08 62.4 62 64.5
CAN.G1417.6 Capsicum annuum HOM05D007506 ORTHO05D008409 3.3e-08 61.6 66 60.6
Dinv02209 Davidia involucrata HOM05D007506 ORTHO05D008409 3.3e-08 61.6 50 64.0
Dinv07589 Davidia involucrata HOM05D007506 ORTHO05D008409 3.3e-08 61.6 50 64.0
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 3.3e-08 61.6 40 80.0
CsaV3_6G004310 Cucumis sativus L. HOM05D007506 ORTHO05D008409 4.3e-08 61.2 57 61.4
Sopen05g033690 Solanum pennellii HOM05D007506 ORTHO05D008409 4.3e-08 61.2 58 63.8
FvH4_7g05151 Fragaria vesca HOM05D007506 ORTHO05D008409 7.4e-08 60.5 65 55.4
FAN05G5073 Fragaria x ananassa HOM05D007506 ORTHO05D008409 7.4e-08 60.5 65 55.4
FAN08G2571 Fragaria x ananassa HOM05D007506 ORTHO05D008409 7.4e-08 60.5 65 55.4
FAN28G2052 Fragaria x ananassa HOM05D007506 ORTHO05D008409 7.4e-08 60.5 65 55.4
Medtr1g111840 Medicago truncatula HOM05D007506 ORTHO05D008409 7.4e-08 60.5 62 59.7
Zm00001eb252110 Zea mays HOM05D000188 ORTHO05D003976 7.4e-08 60.5 64 57.8
Aqoxy7G00782 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 9.7e-08 60.1 64 62.5
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 9.7e-08 60.1 62 58.1
PSO801G0534 Papaver somniferum HOM05D007506 ORTHO05D008409 9.7e-08 60.1 64 53.1
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 1.3e-07 59.7 88 56.8
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 1.7e-07 59.3 65 56.9
TWI38G1985 Tripterygium wilfordii HOM05D007506 ORTHO05D008409 1.7e-07 59.3 56 58.9
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 2.8e-07 58.5 34 85.3
vmacro10310 Vaccinium macrocarpon HOM05D007506 ORTHO05D008409 3.7e-07 58.2 56 62.5
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 4.8e-07 57.8 68 58.8
Os08g0558900 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 4.8e-07 57.8 59 52.5
Lalb_Chr06g0166331 Lupinus albus HOM05D007506 ORTHO05D008409 6.3e-07 57.4 65 56.9
Glyma.20G110900 Glycine max HOM05D007506 ORTHO05D008409 8.2e-07 57.0 64 59.4
QL04p046828 Quercus lobata HOM05D007506 ORTHO05D008409 8.2e-07 57.0 65 56.9
PSO339G4482 Papaver somniferum HOM05D007506 ORTHO05D008409 1.1e-06 56.6 64 54.7
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 1.1e-06 56.6 64 54.7
Sabra10G0188200 Salix brachista HOM05D007506 ORTHO05D008409 1.1e-06 56.6 83 49.4
CANSAT56G4328 Cannabis sativa HOM05D007506 ORTHO05D008409 1.4e-06 56.2 58 56.9
TPR.G2499 Trifolium pratense HOM05D007506 ORTHO05D008409 1.8e-06 55.8 61 55.7
Carub.0006s0364 Capsella rubella HOM05D012863 ORTHO05D008409 4.1e-06 54.7 68 54.4
HPP92_013812 Vanilla planifolia HOM05D007506 ORTHO05D008409 4.1e-06 54.7 47 59.6
Sed0023104 Sechium edule HOM05D007506 ORTHO05D008409 5.3e-06 54.3 59 59.3
A03p01810 Brassica napus HOM05D012863 ORTHO05D008409 9.1e-06 53.5 63 50.8
C03p02190 Brassica napus HOM05D012863 ORTHO05D008409 9.1e-06 53.5 63 50.8
BolC3t12770H Brassica oleracea HOM05D012863 ORTHO05D008409 9.1e-06 53.5 63 50.8
BraA03t09553Z Brassica rapa HOM05D012863 ORTHO05D008409 9.1e-06 53.5 63 50.8
Lsat_1_v5_gn_8_24340 Lactuca sativa HOM05D021830 ORTHO05D025293 9.1e-06 53.5 58 65.5
Lalb_Chr02g0146201 Lupinus albus HOM05D007506 ORTHO05D008409 9.1e-06 53.5 66 54.5
SEGI_39886 Sequoiadendron giganteum HOM05D007506 ORTHO05D008409 9.1e-06 53.5 62 51.6


User provided reference genes

Program Settings