Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 2.6e-242 841.6 426 100.0
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 3.4e-146 522.3 439 65.1
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 5.3e-139 498.4 422 66.4
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 7.2e-128 461.5 432 60.0
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 1.6e-122 443.7 447 57.5
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 1.5e-120 437.2 440 54.3
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 2.5e-120 436.4 438 54.6
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 4.4e-117 425.6 436 53.7
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 2.7e-114 416.4 430 55.3
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 8.6e-113 411.4 414 54.8
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 6.1e-111 405.2 433 50.1
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 8.0e-111 404.8 453 55.6
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 5.2e-110 402.1 425 50.6
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 4.4e-109 399.1 425 50.6
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 4.4e-109 399.1 433 49.9
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 4.4e-109 399.1 432 52.3
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 6.4e-108 395.2 440 49.8
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 1.4e-107 394.0 494 49.0
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 1.6e-106 390.6 415 50.8
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 2.1e-103 380.2 419 53.0
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 2.1e-103 380.2 433 49.4
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 2.8e-103 379.8 415 50.1
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 6.2e-103 378.6 431 51.7
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 2.3e-102 376.7 433 48.5
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 3.1e-102 376.3 430 51.4
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.5e-101 371.7 430 48.8
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 7.5e-101 371.7 433 48.3
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 1.7e-100 370.5 423 49.4
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.9e-100 369.8 433 47.8
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 2.9e-100 369.8 420 49.5
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 4.1e-99 365.9 424 49.3
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 1.2e-98 364.4 430 52.3
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 2.1e-98 363.6 429 49.7
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 6.0e-98 362.1 426 49.8
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 7.8e-98 361.7 403 53.6
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 7.8e-98 361.7 425 50.8
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 7.8e-98 361.7 406 52.5
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 7.8e-98 361.7 433 49.2
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 1.0e-97 361.3 434 50.0
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 1.0e-97 361.3 409 49.6
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 1.7e-97 360.5 405 49.6
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 3.0e-97 359.8 433 49.2
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 3.9e-97 359.4 426 51.2
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 3.9e-97 359.4 426 51.2
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 1.1e-96 357.8 406 53.4
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 1.9e-96 357.1 370 53.2
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 5.6e-96 355.5 399 51.4
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 3.6e-95 352.8 426 49.3
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 1.4e-94 350.9 434 50.0
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 4.0e-94 349.4 429 50.3
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 5.2e-94 349.0 434 48.8
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 6.8e-94 348.6 429 50.6
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 8.9e-94 348.2 429 50.3
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 1.2e-93 347.8 435 51.5
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 2.9e-92 343.2 397 50.6
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 5.4e-91 339.0 402 52.0
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 5.4e-91 339.0 395 50.9
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 1.6e-90 337.4 428 47.2
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 4.6e-90 335.9 302 59.9
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 1.3e-89 334.3 456 46.9
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 1.7e-89 334.0 390 49.0
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 5.1e-89 332.4 390 48.7
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 6.6e-89 332.0 395 47.3
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 8.6e-89 331.6 401 47.4
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.9e-88 330.5 390 47.2
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 9.5e-88 328.2 402 48.8
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 1.6e-87 327.4 364 53.3
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.1e-87 327.0 393 46.6
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 2.8e-87 326.6 392 48.5
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 2.8e-87 326.6 392 48.5
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 2.8e-87 326.6 426 47.2
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 4.7e-87 325.9 416 49.3
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 1.1e-86 324.7 391 46.8
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 1.4e-86 324.3 390 46.2
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 1.8e-86 323.9 392 48.2
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 2.4e-86 323.6 398 47.0
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 3.1e-86 323.2 391 49.4
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 6.8e-86 322.0 402 45.3
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 2.0e-85 320.5 394 46.2
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.0e-85 320.5 433 44.3
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.6e-85 318.5 433 43.9
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 1.3e-84 317.8 392 46.7
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.7e-84 317.4 433 43.6
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.1e-83 314.7 442 42.1
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 1.9e-83 313.9 372 50.3
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 5.4e-83 312.4 397 45.8
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 1.5e-80 304.3 403 46.2
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 3.6e-79 299.7 505 40.2
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 8.1e-79 298.5 406 42.9
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.4e-78 297.7 443 40.4
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 1.4e-78 297.7 330 48.5
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 1.2e-77 294.7 393 44.0
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 2.6e-77 293.5 392 45.9
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 5.8e-77 292.4 349 46.7
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 2.9e-76 290.0 311 52.4
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 3.8e-76 289.7 372 46.0
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 1.2e-74 284.6 311 52.4
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 4.6e-74 282.7 435 40.2
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.9e-73 279.6 389 43.4
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 5.1e-73 279.3 400 43.5
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 1.9e-72 277.3 402 41.8
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 2.8e-71 273.5 302 53.3
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 4.8e-71 272.7 255 60.4
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 3.0e-65 253.4 289 50.2
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 5.8e-61 239.2 389 42.2
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.6e-58 229.6 261 49.4
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 1.1e-56 224.9 310 42.6
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 3.8e-52 209.9 282 45.4
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.7e-50 203.8 252 44.4
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 6.3e-47 192.6 434 33.4
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.1e-46 191.8 389 35.0
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 1.7e-44 184.5 397 35.0
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 2.2e-44 184.1 253 45.1
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 3.8e-44 183.3 451 31.0
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 1.4e-43 181.4 228 48.7
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 1.9e-43 181.0 426 31.7
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 7.9e-42 175.6 171 52.6
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 1.1e-40 171.8 263 40.7
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 2.0e-40 171.0 213 47.4
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.3e-39 168.3 416 31.2
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 8.2e-39 165.6 266 39.8
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 3.8e-36 156.8 220 45.0
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 1.9e-35 154.5 193 44.0
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 6.7e-33 146.0 187 47.6
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 1.4e-30 138.3 391 30.4
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 5.3e-30 136.3 246 40.2
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 5.3e-30 136.3 246 40.2
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 9.1e-30 135.6 195 44.6
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.5e-29 134.8 224 37.9
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 3.6e-26 123.6 170 43.5
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 6.1e-26 122.9 149 47.0
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 8.0e-26 122.5 117 55.6
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 8.2e-23 112.5 184 41.3
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 4.1e-22 110.2 249 32.5
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 2.0e-21 107.8 153 39.9
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 1.7e-20 104.8 137 42.3
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 5.7e-16 89.7 135 40.7
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 1.7e-15 88.2 162 35.2
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 2.8e-15 87.4 168 36.3
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 8.3e-15 85.9 100 45.0
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 1.4e-14 85.1 97 47.4
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 1.7e-12 78.2 58 67.2
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 2.9e-12 77.4 85 47.1
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 3.8e-12 77.0 66 56.1
Oeu012237.1 Olea europaea HOM05D004964 ORTHO05D005918 3.2e-11 73.9 59 61.0
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 3.6e-10 70.5 149 29.5
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 4.0e-09 67.0 109 39.4
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 5.7e-08 63.2 102 37.3


User provided reference genes

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