Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 0.0e+00 2356.3 1241 100.0
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 8.4e-310 1067.4 1337 51.5
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 1.6e-300 1036.6 1337 51.4
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 5.6e-298 1028.1 1336 50.4
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.3e-196 691.4 1362 40.2
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.5e-178 631.3 1375 38.5
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 2.9e-177 627.1 1376 38.4
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 2.3e-158 564.3 1357 38.1
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 2.2e-153 547.7 1323 37.9
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 1.9e-152 544.7 1240 37.3
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 2.3e-150 537.7 1304 36.9
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 1.3e-145 521.9 1380 37.0
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.0e-137 495.7 1291 35.9
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.0e-137 495.7 1284 36.3
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.7e-137 495.0 1204 35.2
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 3.6e-135 487.3 1157 36.3
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 1.2e-130 472.2 1273 34.8
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 7.5e-125 453.0 1367 33.4
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.3e-124 452.2 1256 34.6
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 4.9e-124 450.3 1199 33.8
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 1.5e-120 438.7 1370 33.7
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.8e-118 429.9 1332 32.9
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 1.2e-117 429.1 1356 32.2
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.5e-117 428.7 1116 34.9
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 3.7e-116 424.1 1186 33.1
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.4e-115 422.2 1190 34.2
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 9.2e-115 419.5 1312 32.6
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 3.5e-114 417.5 1323 32.3
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 9.5e-112 409.5 1187 32.1
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 2.3e-110 404.8 1281 32.3
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 2.0e-109 401.7 1430 31.7
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 1.3e-108 399.1 1377 32.2
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 2.9e-108 397.9 1185 33.6
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.6e-106 392.1 1377 30.1
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 2.3e-105 388.3 1203 31.8
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 2.5e-104 384.8 1375 31.3
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 6.2e-103 380.2 1383 31.5
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 4.0e-102 377.5 1365 30.8
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.0e-101 375.2 1369 32.1
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 6.4e-100 370.2 1290 32.9
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 1.9e-99 368.6 1303 32.7
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 5.4e-99 367.1 1364 31.7
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 6.0e-98 363.6 1162 33.0
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 6.0e-98 363.6 1256 32.6
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 5.1e-97 360.5 1194 32.0
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 5.1e-97 360.5 1223 32.5
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 4.3e-96 357.5 1404 31.0
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 9.5e-96 356.3 1359 31.5
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.8e-94 352.1 1407 30.6
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 5.2e-94 350.5 1192 31.4
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 6.8e-94 350.1 1360 31.5
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 6.8e-94 350.1 1290 32.2
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 6.8e-94 350.1 899 34.9
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.5e-93 349.0 1360 31.5
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 4.9e-92 344.0 1375 31.6
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 8.4e-92 343.2 1349 31.4
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 1.4e-91 342.4 1331 31.7
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 1.9e-91 342.0 1170 32.2
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.5e-90 337.8 1352 30.9
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 1.1e-88 332.8 999 33.6
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 1.1e-86 326.2 1371 29.5
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.6e-85 320.1 1123 32.0
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 5.1e-81 307.4 1239 29.6
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 6.6e-81 307.0 1362 30.0
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 4.9e-76 290.8 1423 28.5
SGA_v2.0_scaffold44G16695 Striga asiatica HOM05D000283 ORTHO05D006673 7.9e-74 283.5 1269 29.5
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 4.8e-71 274.2 1402 27.5
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 3.4e-69 268.1 1383 27.9
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 2.9e-68 265.0 1127 29.1
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 1.5e-64 252.7 555 36.4
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 7.6e-61 240.4 754 33.0
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 3.5e-58 231.5 1336 27.7
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 5.1e-57 227.6 1294 27.7
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 8.2e-55 220.3 292 46.2
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 2.0e-53 215.7 1250 27.0
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 3.4e-53 214.9 1387 26.5
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 9.3e-51 206.8 1094 29.4
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.8e-39 168.7 1208 26.6
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.2e-37 163.3 680 31.9
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 2.9e-36 158.7 1008 27.8
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 8.8e-33 147.1 861 25.1
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 8.8e-33 147.1 679 30.6
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.0e-32 146.0 313 36.7
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 1.7e-31 142.9 676 30.0
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 2.8e-31 142.1 608 30.1
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.4e-30 139.8 678 29.2
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 7.0e-30 137.5 665 28.3
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.0e-28 133.7 673 29.4
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 5.0e-28 131.3 637 29.7
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.3e-25 122.5 395 32.7
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 5.2e-25 121.3 461 32.1
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.2e-24 120.2 1209 25.1
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 3.3e-24 118.6 353 33.1
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 3.1e-22 112.1 1129 24.5
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 2.3e-17 95.9 623 27.4
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 4.0e-17 95.1 641 27.6
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 6.8e-17 94.4 335 32.2
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 8.8e-17 94.0 594 26.6
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.7e-16 91.3 205 36.1
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.8e-16 90.5 898 24.2
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 8.3e-15 87.4 357 30.0
Oeu025165.1 Olea europaea HOM05D008194 ORTHO05D010811 1.2e-13 83.6 290 32.1
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 4.5e-13 81.6 1213 23.7
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.5e-11 74.7 400 27.0
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.5e-11 74.7 183 35.0
Solyc04g010180.4 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.2e-10 73.6 150 35.3
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 3.0e-09 68.9 475 26.9
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 2.6e-08 65.9 146 34.9
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 4.4e-08 65.1 1166 22.8
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.7e-08 64.7 396 27.8
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 7.5e-08 64.3 681 26.0
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.8e-07 62.4 88 40.9
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 6.3e-07 61.2 669 24.1
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 1.4e-06 60.1 1164 23.1
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.8e-06 59.7 760 26.3
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 3.1e-06 58.9 1344 23.7
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 5.4e-06 58.2 1199 23.2


User provided reference genes

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