Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 0.0e+00 1485.3 717 100.0
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 0.0e+00 1087.4 732 73.2
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.8e-304 1047.0 716 70.4
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.5e-303 1045.8 716 70.3
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.6e-300 1035.8 724 70.4
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 6.2e-289 997.3 724 67.7
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 9.5e-274 946.8 728 62.6
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 3.6e-273 944.9 727 63.1
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 6.2e-273 944.1 727 63.1
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.2e-270 935.6 717 62.8
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 4.9e-270 934.5 723 64.0
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 4.6e-268 927.9 715 62.5
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 6.0e-268 927.5 713 63.3
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.3e-267 926.4 688 67.3
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.2e-262 909.1 694 64.0
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 6.6e-259 897.5 731 60.3
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.9e-258 896.0 734 61.2
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.1e-256 890.2 697 62.1
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 3.1e-256 888.6 722 60.0
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 2.6e-255 885.6 684 61.7
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 2.6e-255 885.6 750 58.7
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.9e-253 879.4 687 61.3
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 5.4e-253 877.9 693 60.5
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.6e-252 874.8 704 59.9
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.3e-251 873.2 725 58.8
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 3.0e-251 872.1 699 60.1
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.5e-250 869.8 741 59.0
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 3.3e-250 868.6 734 59.4
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 5.6e-250 867.8 691 62.1
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.3e-249 866.7 684 62.3
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.6e-249 866.3 707 60.4
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.1e-248 863.6 719 59.4
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.1e-248 863.6 691 61.8
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.3e-246 856.7 708 59.2
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.9e-246 855.5 711 59.6
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 3.8e-246 855.1 720 58.5
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 6.4e-246 854.4 682 61.4
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 8.4e-246 854.0 673 60.6
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 8.4e-246 854.0 609 66.3
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 3.5e-244 848.6 677 60.7
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.8e-243 846.3 686 59.8
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 3.0e-243 845.5 703 58.7
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.1e-243 844.7 681 60.8
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.1e-242 843.6 683 59.7
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.5e-242 843.2 672 60.4
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 2.8e-241 839.0 679 60.7
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.8e-241 839.0 702 58.3
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 6.9e-240 834.3 677 59.7
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.2e-239 833.6 723 57.8
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.2e-239 833.6 715 58.7
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 4.5e-239 831.6 706 56.5
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.0e-238 830.5 693 59.5
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.7e-238 829.7 694 59.9
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 3.8e-238 828.6 719 57.9
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 3.8e-238 828.6 694 59.2
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.9e-237 826.2 713 57.2
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.2e-237 825.5 679 59.8
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 3.2e-237 825.5 704 58.7
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 4.2e-237 825.1 692 57.8
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 5.5e-237 824.7 692 57.4
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 9.3e-237 823.9 693 59.0
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 2.7e-236 822.4 718 57.5
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.7e-236 822.4 720 57.4
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.3e-235 819.3 717 57.5
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.9e-234 816.2 679 58.6
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 5.7e-234 814.7 715 56.5
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 2.2e-233 812.8 714 57.4
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.3e-230 803.5 684 57.5
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 3.8e-230 802.0 685 58.4
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 5.0e-230 801.6 718 55.6
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 2.1e-228 796.2 718 56.1
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 2.7e-228 795.8 684 57.7
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 6.7e-227 791.2 594 65.2
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 6.7e-227 791.2 682 57.9
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 6.3e-225 784.6 684 57.0
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.5e-222 774.2 632 60.4
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 7.2e-221 771.2 686 56.6
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 9.4e-221 770.8 742 52.8
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.2e-220 770.4 694 56.3
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.0e-219 765.8 687 54.7
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.7e-218 761.5 739 53.9
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.7e-217 760.0 685 54.0
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.2e-217 759.6 695 54.7
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.2e-217 759.6 681 53.9
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 8.2e-217 757.7 681 53.6
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.4e-216 756.9 699 54.8
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 5.3e-216 755.0 686 54.5
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 3.4e-215 752.3 591 61.6
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 7.7e-215 751.1 683 53.4
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.2e-214 749.6 618 58.9
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 3.8e-214 748.8 680 53.8
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.9e-213 746.5 685 54.5
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 3.2e-213 745.7 897 46.5
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.2e-213 745.7 688 53.8
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 9.4e-213 744.2 688 53.8
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.7e-212 742.7 683 53.0
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 3.6e-212 742.3 683 52.9
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 3.6e-212 742.3 683 52.9
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 6.1e-212 741.5 685 55.8
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 2.3e-211 739.6 682 53.4
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 5.7e-210 734.9 685 53.1
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 5.7e-210 734.9 720 52.8
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.2e-209 733.0 725 52.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 3.1e-208 729.2 711 51.9
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.5e-207 725.7 683 52.4
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.9e-206 722.6 733 52.9
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 8.5e-206 721.1 709 52.0
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.5e-205 720.3 714 51.4
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 3.2e-205 719.2 687 52.3
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.1e-204 716.5 752 51.3
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 2.7e-204 716.1 672 55.1
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.3e-203 713.0 712 50.8
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.0e-203 712.2 688 51.2
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 9.7e-202 707.6 723 50.8
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 7.0e-200 701.4 686 54.4
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 7.7e-199 698.0 529 63.7
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.2e-198 696.4 762 47.5
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.0e-198 695.3 665 53.5
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 5.5e-197 691.8 676 53.1
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 7.2e-197 691.4 691 50.7
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.1e-196 689.9 672 53.7
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.4e-192 677.2 684 52.2
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.6e-191 673.7 650 52.3
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 6.1e-188 661.8 689 50.7
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.0e-187 661.0 700 50.3
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 6.3e-185 651.7 726 48.9
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.2e-175 620.9 689 46.9
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 7.3e-173 611.7 684 48.0
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 2.6e-170 603.2 720 46.7
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 4.9e-169 599.0 527 56.5
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.7e-161 573.9 562 52.7
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.6e-148 530.8 546 50.4
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.5e-133 481.1 395 61.0
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 6.2e-132 475.7 339 64.9
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 7.4e-125 452.2 429 49.9
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 2.7e-119 433.7 397 54.2
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.2e-114 418.3 295 63.7
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 8.5e-105 385.6 231 77.9
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 2.7e-103 380.6 519 39.9
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 9.1e-99 365.5 464 43.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 2.7e-95 354.0 408 46.6
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 3.1e-91 340.5 327 55.0
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 1.2e-90 338.6 564 36.0
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 9.1e-83 312.4 311 47.3
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.7e-82 310.8 544 34.7
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 8.5e-81 305.8 570 33.7
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 2.0e-58 231.5 162 68.5
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 7.3e-56 223.0 191 59.7
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 6.2e-55 219.9 146 68.5
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.3e-49 202.2 127 72.4
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 3.9e-49 200.7 233 45.5
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.5e-48 198.0 211 49.8
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 5.6e-48 196.8 250 43.6
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 2.3e-46 191.4 212 51.4
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.2e-44 184.9 128 64.8
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.3e-40 171.0 382 32.5
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 8.4e-36 156.4 180 45.0
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-35 156.0 99 72.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-35 156.0 99 72.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-35 156.0 99 72.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 3.5e-26 124.4 275 32.4
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 3.9e-25 120.9 135 44.4
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 3.6e-23 114.4 253 32.0
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 3.1e-22 111.3 255 31.4
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 2.7e-18 98.2 59 69.5
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.3e-15 89.4 237 29.5
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 6.2e-15 87.0 80 53.8
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.5e-13 80.9 139 33.8
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.2e-12 78.6 48 66.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.2e-12 78.6 48 66.7
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 4.9e-12 77.4 146 35.6
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 7.1e-11 73.6 54 64.8


User provided reference genes

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