Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 6.0e-144 514.2 273 100.0
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 8.9e-79 297.7 313 60.4
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 2.3e-74 283.1 345 50.7
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 1.5e-73 280.4 327 53.2
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 4.0e-71 272.3 328 53.4
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 2.6e-70 269.6 329 55.0
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 3.4e-70 269.2 329 52.3
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 4.9e-69 265.4 329 51.7
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 8.3e-69 264.6 335 51.9
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 3.2e-68 262.7 329 51.1
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 1.2e-67 260.8 344 48.5
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 1.0e-66 257.7 327 53.5
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 1.0e-66 257.7 328 50.0
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 1.0e-66 257.7 318 48.7
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 1.3e-66 257.3 342 48.2
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 3.0e-66 256.1 327 51.1
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 8.6e-66 254.6 356 48.0
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 1.5e-65 253.8 339 51.6
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 1.5e-65 253.8 332 50.0
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 7.3e-65 251.5 307 51.1
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 2.8e-64 249.6 327 48.9
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 1.4e-63 247.3 317 46.1
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 2.3e-63 246.5 330 50.6
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 4.0e-63 245.7 337 48.7
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 6.8e-63 245.0 322 47.5
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 8.9e-63 244.6 359 44.3
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 8.9e-63 244.6 355 47.0
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 1.5e-62 243.8 332 47.6
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 1.5e-62 243.8 318 49.1
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 3.4e-62 242.7 340 45.9
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 3.4e-62 242.7 318 49.4
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 5.8e-62 241.9 335 51.3
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 7.5e-62 241.5 340 45.6
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 9.8e-62 241.1 331 51.7
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 1.7e-61 240.4 358 45.0
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 2.2e-61 240.0 333 50.5
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 4.9e-61 238.8 318 48.1
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 1.1e-60 237.7 275 52.4
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 1.9e-60 236.9 325 48.0
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 1.9e-60 236.9 360 43.3
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 3.2e-60 236.1 319 47.0
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 1.6e-59 233.8 330 50.0
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 3.5e-59 232.6 339 49.0
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 1.0e-58 231.1 334 47.0
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 1.0e-58 231.1 327 49.5
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 1.3e-58 230.7 313 44.7
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 2.3e-58 229.9 334 46.7
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 3.9e-58 229.2 337 48.7
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.5e-57 227.3 306 45.4
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 8.1e-56 221.5 342 48.0
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 1.1e-55 221.1 280 52.5
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 5.2e-55 218.8 356 44.7
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 5.2e-55 218.8 315 44.8
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 6.8e-55 218.4 331 45.3
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 1.5e-54 217.2 322 48.4
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 2.0e-54 216.9 327 43.4
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 2.0e-54 216.9 369 43.1
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 2.2e-53 213.4 330 46.1
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 4.9e-53 212.2 319 44.2
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 7.1e-52 208.4 301 43.5
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 7.8e-51 204.9 334 40.1
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 1.0e-50 204.5 320 44.4
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 1.3e-50 204.1 339 41.6
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 3.0e-50 203.0 353 43.3
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 1.1e-49 201.1 336 43.8
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 1.1e-49 201.1 318 42.8
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 1.9e-49 200.3 147 69.4
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 4.3e-49 199.1 356 43.8
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 3.1e-47 193.0 156 65.4
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 5.2e-47 192.2 344 41.3
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 1.5e-46 190.7 145 64.8
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 3.4e-46 189.5 334 38.6
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 5.8e-46 188.7 323 43.0
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 1.1e-44 184.5 340 41.8
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 3.2e-44 183.0 177 52.5
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 4.2e-44 182.6 333 40.2
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 1.6e-43 180.6 319 44.5
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 3.5e-43 179.5 324 40.7
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 6.0e-43 178.7 347 40.6
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 1.3e-42 177.6 176 51.7
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 2.3e-42 176.8 365 37.0
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 2.3e-42 176.8 127 66.9
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 8.7e-42 174.9 148 59.5
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 8.7e-42 174.9 323 39.6
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 1.1e-41 174.5 311 37.6
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.5e-41 174.1 335 38.2
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 5.6e-41 172.2 309 41.1
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 9.6e-41 171.4 326 39.3
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 1.6e-40 170.6 330 39.7
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 6.2e-40 168.7 300 41.0
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 8.1e-40 168.3 323 37.2
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 8.1e-40 168.3 161 54.0
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.1e-39 167.9 308 38.0
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 6.9e-39 165.2 309 41.1
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 9.0e-39 164.9 316 38.3
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 1.5e-38 164.1 314 36.6
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 2.6e-38 163.3 161 54.0
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 2.6e-38 163.3 237 43.5
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 7.6e-38 161.8 210 45.7
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 1.1e-36 157.9 185 49.2
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 1.1e-36 157.9 185 49.2
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 7.1e-36 155.2 247 41.7
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 9.3e-36 154.8 312 35.6
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 2.7e-35 153.3 173 50.3
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 2.7e-35 153.3 173 50.3
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 3.0e-34 149.8 327 34.9
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 3.0e-34 149.8 145 53.8
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 3.9e-34 149.4 295 38.6
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 5.6e-33 145.6 154 51.9
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 1.6e-32 144.1 154 51.3
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 3.6e-32 142.9 127 61.4
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 8.4e-29 131.7 268 39.9
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 1.1e-25 121.3 174 41.4
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 1.5e-25 120.9 216 36.1
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.9e-25 120.6 236 39.4
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 1.1e-23 114.8 157 43.3
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 1.1e-23 114.8 107 57.9
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 2.0e-22 110.5 141 44.0
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 1.0e-21 108.2 147 42.9
Oeu001370.1 Olea europaea HOM05D006307 ORTHO05D008123 3.0e-18 96.7 83 61.4
CSS0037764 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 1.6e-11 74.3 83 56.6
SMO172G0022 Selaginella moellendorffii HOM05D001109 ORTHO05D001051 3.7e-08 63.2 145 31.0
THA.LOC104798699 Tarenaya hassleriana HOM05D002301 ORTHO05D002316 3.7e-08 63.2 147 27.9
Eucgr.K00286 Eucalyptus grandis HOM05D002301 ORTHO05D002316 3.1e-07 60.1 150 31.3
Zm00001eb157840 Zea mays HOM05D001109 ORTHO05D001051 3.1e-07 60.1 139 32.4
Lsat_1_v5_gn_6_15121 Lactuca sativa HOM05D000865 ORTHO05D000739 4.1e-07 59.7 153 28.1
Peaxi162Scf00401g00012 Petunia axillaris HOM05D002301 ORTHO05D002316 4.1e-07 59.7 147 27.2
ATR0680G098 Amborella trichopoda HOM05D002301 ORTHO05D002316 5.3e-07 59.3 151 24.5
Lj4g0001384 Lotus japonicus HOM05D006307 ORTHO05D008123 5.3e-07 59.3 90 45.6
Lsat_1_v5_gn_2_72960 Lactuca sativa HOM05D000865 ORTHO05D000739 9.0e-07 58.5 146 30.1
Aa31LG5G800 Aethionema arabicum HOM05D001977 ORTHO05D002246 1.5e-06 57.8 117 32.5
COL.COLO4_15517 Corchorus olitorius HOM05D001109 ORTHO05D001051 2.0e-06 57.4 144 25.0
Lsat_1_v5_gn_5_53581 Lactuca sativa HOM05D000865 ORTHO05D000739 2.0e-06 57.4 156 27.6
CAN.G749.12 Capsicum annuum HOM05D002301 ORTHO05D002316 3.4e-06 56.6 137 27.7
Nitab4.5_0000674g0020 Nicotiana tabacum HOM05D002301 ORTHO05D002316 3.4e-06 56.6 137 27.7
CDE02G1174 Ceratophyllum demersum HOM05D002301 ORTHO05D002316 4.5e-06 56.2 145 28.3
CDE06G0347 Ceratophyllum demersum HOM05D002301 ORTHO05D002316 4.5e-06 56.2 145 26.9
HanXRQChr06g0182181 Helianthus annuus HOM05D002301 ORTHO05D002316 4.5e-06 56.2 146 26.7
Mapoly0015s0136 Marchantia polymorpha HOM05D001109 ORTHO05D000739 4.5e-06 56.2 139 30.2
ATR0680G217 Amborella trichopoda HOM05D002301 ORTHO05D002316 5.9e-06 55.8 154 27.3
CDE05G0127 Ceratophyllum demersum HOM05D001109 ORTHO05D001051 5.9e-06 55.8 227 26.4
Lsat_1_v5_gn_8_101320 Lactuca sativa HOM05D002301 ORTHO05D002316 5.9e-06 55.8 148 25.0
Nitab4.5_0000737g0040 Nicotiana tabacum HOM05D002301 ORTHO05D002316 5.9e-06 55.8 137 27.7
Ciclev10021815m.g Citrus clementina HOM05D001109 ORTHO05D001051 7.7e-06 55.5 155 26.5
MBI17_g42620_MAGBIO Magnolia biondii HOM05D002301 ORTHO05D002316 7.7e-06 55.5 198 27.3
Nn7g37339 Nelumbo nucifera HOM05D001109 ORTHO05D001051 7.7e-06 55.5 158 29.1
Phvul.004G110400 Phaseolus vulgaris HOM05D002301 ORTHO05D002316 7.7e-06 55.5 166 27.1
Cfa006376 Carpinus fangiana HOM05D001109 ORTHO05D001051 1.0e-05 55.1 173 24.3
Thhalv10028892m.g Eutrema salsugineum HOM05D001109 ORTHO05D001051 1.0e-05 55.1 117 32.5
HanXRQChr06g0182191 Helianthus annuus HOM05D002301 ORTHO05D002316 1.0e-05 55.1 146 26.0


User provided reference genes

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