Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 1.5e-161 572.8 284 100.0
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 1.0e-130 470.3 284 79.9
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.6e-115 418.7 324 65.7
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.7e-112 408.7 327 63.9
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 3.2e-108 395.6 315 65.1
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 4.2e-108 395.2 287 67.6
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 1.2e-107 393.7 289 68.5
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 2.1e-107 392.9 288 67.7
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 8.0e-107 391.0 243 77.0
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 1.3e-104 383.6 292 66.8
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 1.3e-104 383.6 284 68.3
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 1.7e-104 383.3 284 68.3
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 6.3e-104 381.3 283 68.2
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 2.0e-102 376.3 289 63.0
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 2.7e-102 375.9 290 65.5
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 5.9e-102 374.8 287 64.8
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 1.7e-101 373.2 290 65.2
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 1.7e-101 373.2 286 64.0
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 5.0e-101 371.7 282 66.7
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 8.6e-101 370.9 285 64.6
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 3.3e-100 369.0 283 66.4
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 9.5e-100 367.5 286 65.4
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 1.2e-99 367.1 278 65.1
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 3.6e-99 365.5 283 65.4
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 4.7e-99 365.2 277 65.7
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 8.0e-99 364.4 294 63.3
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.8e-98 363.2 283 66.8
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.3e-98 362.8 283 67.1
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 3.0e-98 362.5 281 64.8
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 8.9e-98 360.9 293 62.5
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 1.2e-97 360.5 292 61.3
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 5.7e-97 358.2 292 62.7
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 7.5e-97 357.8 286 64.0
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 7.5e-97 357.8 279 64.9
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 9.8e-97 357.5 282 64.5
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 9.8e-97 357.5 255 68.6
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 1.3e-96 357.1 226 75.2
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 1.7e-96 356.7 310 58.4
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 2.9e-96 355.9 277 64.6
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 2.9e-96 355.9 277 64.6
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 3.7e-96 355.5 282 64.5
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 6.4e-96 354.8 279 63.4
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 6.4e-96 354.8 282 63.8
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 1.8e-95 353.2 290 62.1
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 2.4e-95 352.8 288 61.8
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 3.2e-95 352.4 288 62.2
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 4.1e-95 352.1 280 62.9
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 1.2e-94 350.5 282 63.5
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 5.9e-94 348.2 279 63.1
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 5.9e-94 348.2 292 62.0
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 1.0e-93 347.4 284 62.0
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.3e-93 347.1 248 69.4
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 2.3e-93 346.3 277 63.2
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 3.9e-93 345.5 285 62.5
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 3.9e-93 345.5 285 63.2
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 6.6e-93 344.7 279 62.0
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 8.6e-93 344.4 277 63.5
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 1.5e-92 343.6 282 60.6
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 4.3e-92 342.0 279 60.9
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 7.3e-92 341.3 310 57.7
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 9.5e-92 340.9 282 59.9
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 2.8e-91 339.3 254 67.7
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 3.6e-91 339.0 243 68.3
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 3.6e-91 339.0 284 60.6
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 4.7e-91 338.6 263 66.5
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 8.0e-91 337.8 251 68.5
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 1.4e-90 337.0 225 71.1
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.4e-90 337.0 247 69.6
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 1.8e-90 336.7 284 59.5
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 1.8e-90 336.7 284 60.2
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 5.2e-90 335.1 216 74.1
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 6.8e-90 334.7 265 62.3
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 1.2e-89 334.0 309 57.6
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 7.5e-89 331.3 243 67.5
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.2e-88 329.7 272 62.1
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 8.3e-88 327.8 284 59.5
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 8.3e-88 327.8 247 67.6
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 1.1e-87 327.4 280 60.0
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 2.7e-86 322.8 281 58.7
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 3.5e-86 322.4 291 57.7
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 7.8e-86 321.2 257 61.5
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 1.0e-85 320.9 253 63.6
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 1.7e-85 320.1 274 58.8
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 1.7e-85 320.1 216 70.8
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 1.1e-84 317.4 225 68.0
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 2.5e-84 316.2 223 67.3
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 3.3e-84 315.8 246 63.4
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 9.5e-84 314.3 288 55.2
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 1.6e-83 313.5 280 58.2
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 8.1e-83 311.2 220 66.8
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 3.1e-82 309.3 220 67.3
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 5.2e-82 308.5 226 67.7
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 5.2e-82 308.5 247 63.6
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 7.5e-81 304.7 227 67.8
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 4.9e-80 302.0 334 52.1
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 7.1e-79 298.1 193 75.6
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 1.2e-78 297.4 221 65.2
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.3e-77 293.9 270 56.7
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 1.5e-76 290.4 221 66.1
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 2.5e-76 289.7 247 59.1
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 2.5e-76 289.7 247 59.1
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 1.6e-75 287.0 247 58.7
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 1.6e-75 287.0 247 58.7
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 1.5e-73 280.4 166 81.9
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 1.7e-72 276.9 264 56.1
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 1.1e-71 274.2 170 78.2
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 7.1e-71 271.6 286 52.4
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 6.0e-70 268.5 216 63.9
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 1.1e-66 257.7 175 70.9
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 4.0e-66 255.8 300 49.3
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 9.9e-65 251.1 247 57.1
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 5.3e-58 228.8 210 51.9
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 4.4e-57 225.7 209 51.7
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 7.1e-55 218.4 208 48.6
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 2.1e-54 216.9 264 48.9
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.3e-53 213.4 146 71.2
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 5.6e-52 208.8 133 75.2
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 2.8e-51 206.5 267 41.9
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 3.6e-51 206.1 137 73.7
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 2.5e-44 183.3 198 46.5
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 1.5e-41 174.1 150 58.0
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 1.2e-38 164.5 105 75.2
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 1.1e-31 141.4 135 53.3
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 1.1e-28 131.3 183 37.2
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 1.9e-23 114.0 80 70.0
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 1.9e-23 114.0 188 35.6
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 1.6e-22 110.9 80 67.5
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 5.1e-21 105.9 128 48.4
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 7.4e-20 102.1 82 58.5
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 5.0e-16 89.4 65 63.1
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 8.5e-16 88.6 87 56.3
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 2.1e-14 84.0 81 51.9
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 3.0e-13 80.1 120 40.8
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 4.1e-10 69.7 40 80.0
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 2.2e-08 63.9 34 85.3
Peaxi162Scf00304g01114 Petunia axillaris HOM05D005379 ORTHO05D006661 1.5e-07 61.2 40 70.0
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 4.2e-07 59.7 47 63.8
Thhalv10029279m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 9.4e-07 58.5 53 56.6
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 1.2e-06 58.2 52 50.0


User provided reference genes

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