Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 1.1e-119 433.3 230 100.0
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 7.0e-93 344.4 230 74.3
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.7e-86 322.0 232 71.6
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.7e-86 322.0 232 71.6
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 6.5e-83 311.2 230 68.3
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 9.4e-82 307.4 235 68.5
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 2.1e-81 306.2 228 65.8
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 3.6e-81 305.4 230 67.8
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 3.6e-81 305.4 228 65.8
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 4.7e-81 305.1 231 64.9
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 1.8e-80 303.1 227 65.6
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 2.3e-80 302.8 231 64.9
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 1.2e-79 300.4 231 66.2
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 2.0e-79 299.7 228 64.9
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 9.7e-79 297.4 232 67.2
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 2.2e-78 296.2 233 67.8
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 6.3e-78 294.7 231 63.2
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 2.4e-77 292.7 233 63.9
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 7.0e-77 291.2 230 68.3
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 9.1e-77 290.8 231 62.8
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 1.2e-76 290.4 225 68.0
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 1.2e-76 290.4 209 68.9
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.2e-76 290.4 227 63.0
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.6e-76 290.0 233 62.7
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 2.7e-76 289.3 223 69.5
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 3.5e-76 288.9 231 63.6
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 4.5e-76 288.5 233 63.1
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 5.9e-76 288.1 232 60.8
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 5.9e-76 288.1 232 65.1
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 7.7e-76 287.7 233 62.2
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.3e-75 287.0 232 62.5
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.7e-75 286.6 231 62.3
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 2.2e-75 286.2 232 63.4
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 2.2e-75 286.2 233 61.8
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 2.9e-75 285.8 231 61.9
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 1.5e-74 283.5 232 62.1
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 1.5e-74 283.5 229 62.4
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 3.2e-74 282.3 233 62.7
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 3.2e-74 282.3 231 64.5
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 4.2e-74 282.0 233 62.2
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 3.6e-73 278.9 235 62.1
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 1.0e-72 277.3 229 60.7
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 1.8e-72 276.6 234 61.5
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.3e-72 276.2 222 62.2
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 1.5e-71 273.5 229 62.9
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 3.4e-71 272.3 232 65.5
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 5.7e-71 271.6 230 62.6
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 9.8e-71 270.8 208 64.4
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 8.3e-70 267.7 225 64.9
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 1.1e-69 267.3 209 63.6
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 1.4e-69 266.9 240 59.2
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 4.1e-69 265.4 228 57.9
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 1.2e-68 263.8 235 60.4
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 2.0e-68 263.1 230 59.1
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 2.7e-68 262.7 225 62.7
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 2.3e-67 259.6 245 54.3
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 3.3e-66 255.8 235 60.4
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 3.3e-66 255.8 229 59.4
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 3.3e-66 255.8 233 56.7
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 4.2e-66 255.4 233 65.2
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 1.6e-65 253.4 228 58.8
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 4.7e-65 251.9 228 57.5
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.0e-64 250.8 230 59.1
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 3.4e-63 245.7 233 57.5
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 3.4e-63 245.7 232 54.7
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 5.7e-63 245.0 228 59.2
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 5.7e-63 245.0 234 56.0
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 9.8e-63 244.2 234 54.7
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 1.3e-62 243.8 210 62.4
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 2.2e-62 243.0 216 56.5
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 2.8e-62 242.7 230 58.3
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 2.8e-62 242.7 228 53.1
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 3.7e-62 242.3 229 58.5
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 4.9e-62 241.9 232 54.3
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 6.3e-62 241.5 230 56.1
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 8.3e-62 241.1 239 54.4
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 1.8e-61 240.0 228 56.6
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 2.4e-61 239.6 232 54.3
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 7.0e-61 238.0 232 53.4
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 7.0e-61 238.0 284 47.9
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 1.2e-60 237.3 230 53.0
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 1.6e-60 236.9 240 53.3
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 2.0e-60 236.5 232 56.9
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 3.5e-60 235.7 231 54.5
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 7.8e-60 234.6 231 53.7
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 7.8e-60 234.6 231 52.4
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 1.7e-59 233.4 229 52.0
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 2.3e-59 233.0 246 50.8
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 6.6e-59 231.5 230 52.6
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 1.1e-58 230.7 220 55.0
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 1.1e-58 230.7 222 54.1
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 1.5e-58 230.3 231 52.8
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 2.5e-58 229.6 281 47.0
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 2.5e-58 229.6 232 51.3
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.3e-58 229.2 231 53.2
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 4.0e-56 222.2 204 58.8
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 8.9e-56 221.1 245 53.5
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 9.8e-55 217.6 234 50.4
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 4.9e-54 215.3 237 50.6
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 6.4e-54 214.9 230 54.3
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 2.4e-53 213.0 202 58.4
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 2.0e-52 209.9 175 60.0
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 9.5e-50 201.1 215 50.2
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.1e-49 199.9 234 47.4
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 8.9e-48 194.5 168 63.1
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 9.8e-47 191.0 266 43.6
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 1.9e-45 186.8 167 59.3
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 2.7e-44 183.0 223 48.0
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 3.5e-44 182.6 231 46.8
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 1.1e-40 171.0 225 41.8
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 1.4e-40 170.6 173 51.4
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 4.0e-40 169.1 239 41.0
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 3.7e-38 162.5 231 40.3
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.9e-37 160.2 229 42.8
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 4.6e-36 155.6 135 58.5
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 7.8e-36 154.8 139 52.5
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 3.0e-35 152.9 236 39.4
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 1.6e-33 147.1 243 38.3
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 2.8e-33 146.4 113 63.7
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 4.7e-33 145.6 93 71.0
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 1.7e-30 137.1 208 43.8
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 2.4e-29 133.3 95 64.2
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 7.3e-26 121.7 141 46.1
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 6.2e-25 118.6 136 50.0
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 2.4e-24 116.7 107 56.1
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 6.9e-24 115.2 100 63.0
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 9.3e-21 104.8 98 55.1
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 3.3e-18 96.3 148 38.5
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 5.3e-16 89.0 109 44.0
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 7.6e-15 85.1 139 32.4
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 1.7e-14 84.0 75 57.3
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 2.2e-14 83.6 73 58.9
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 2.9e-14 83.2 133 41.4
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.1e-13 81.3 79 55.7
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.4e-13 80.1 54 66.7
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 4.2e-13 79.3 185 31.4
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.1e-09 67.0 135 34.1
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 9.0e-08 61.6 101 36.6
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 9.0e-08 61.6 76 48.7
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.9e-06 55.8 94 36.2


User provided reference genes

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