Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.4e-166 589.7 328 100.0
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 2.5e-120 436.0 278 71.9
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 6.2e-119 431.4 284 71.5
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 2.7e-114 416.0 337 61.1
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 2.3e-113 412.9 275 70.5
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 1.8e-110 403.3 278 68.3
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.8e-110 403.3 280 68.6
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 7.1e-107 391.3 279 67.4
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 6.0e-106 388.3 280 65.7
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.7e-105 386.7 272 68.0
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 3.0e-105 386.0 297 61.6
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.9e-104 383.3 275 65.5
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 4.3e-104 382.1 271 66.8
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 7.3e-104 381.3 279 62.4
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 9.6e-104 380.9 253 68.0
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 9.6e-104 380.9 279 65.9
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 8.1e-103 377.9 277 65.0
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 8.1e-103 377.9 292 62.0
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.8e-102 376.7 277 65.0
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 3.1e-102 375.9 273 64.8
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 3.1e-102 375.9 276 65.6
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 4.0e-102 375.6 272 64.7
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 8.9e-102 374.4 272 65.1
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.9e-102 374.4 272 65.1
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.2e-101 374.0 276 63.8
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 1.5e-101 373.6 269 65.1
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.0e-101 373.2 269 65.8
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.0e-101 373.2 269 65.8
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 5.8e-101 371.7 272 65.4
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 7.6e-101 371.3 331 55.3
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 6.4e-100 368.2 272 64.7
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 6.4e-100 368.2 274 65.0
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 8.4e-100 367.9 272 64.3
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.4e-99 367.1 279 64.5
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.4e-99 367.1 283 61.5
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 1.9e-99 366.7 278 62.6
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.4e-99 366.3 251 69.7
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 3.2e-99 365.9 278 61.5
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.4e-99 365.2 286 62.2
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 5.4e-99 365.2 275 62.9
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 5.4e-99 365.2 275 63.3
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 7.1e-99 364.8 286 61.9
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 7.1e-99 364.8 270 62.6
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 7.1e-99 364.8 270 62.6
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 4.6e-98 362.1 235 72.3
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 4.6e-98 362.1 311 57.2
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 4.6e-98 362.1 278 63.3
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 6.0e-98 361.7 274 63.1
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 6.0e-98 361.7 267 64.0
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 6.0e-98 361.7 267 64.4
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 6.0e-98 361.7 273 60.8
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 6.0e-98 361.7 270 63.3
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 7.8e-98 361.3 281 62.6
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.3e-97 360.5 270 62.2
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 3.0e-97 359.4 278 63.3
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.9e-97 359.0 276 60.9
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 1.1e-96 357.5 281 63.0
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 1.9e-96 356.7 278 62.2
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 3.3e-96 355.9 278 62.9
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 5.6e-96 355.1 233 69.1
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 7.3e-96 354.8 278 62.6
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 2.1e-95 353.2 247 65.6
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 2.8e-95 352.8 247 64.8
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 4.8e-95 352.1 259 62.9
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 6.2e-95 351.7 247 65.6
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 6.2e-95 351.7 308 56.5
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 1.1e-94 350.9 275 60.4
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 2.4e-94 349.7 259 62.9
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.3e-94 348.6 275 60.7
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 6.9e-94 348.2 278 60.1
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 6.9e-94 348.2 278 60.1
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 6.9e-94 348.2 279 61.3
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 6.9e-94 348.2 252 62.7
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 6.9e-94 348.2 275 62.9
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 1.2e-93 347.4 247 64.0
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 1.5e-93 347.1 278 59.4
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.0e-93 346.7 252 62.3
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 3.4e-93 345.9 259 62.2
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 3.4e-93 345.9 259 62.2
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 4.5e-93 345.5 278 61.2
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 4.5e-93 345.5 254 65.7
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 9.9e-93 344.4 273 61.2
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 9.9e-93 344.4 251 64.9
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.3e-92 344.0 270 59.6
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.2e-92 343.2 276 61.2
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.2e-92 343.2 273 61.5
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 2.9e-92 342.8 247 63.2
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.4e-91 340.5 252 65.9
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 2.4e-91 339.7 311 55.0
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.4e-91 339.7 270 61.9
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.4e-91 339.7 276 60.1
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 3.2e-91 339.3 276 61.2
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 5.4e-91 338.6 275 61.1
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 5.4e-91 338.6 252 63.1
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 5.4e-91 338.6 252 63.5
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 9.3e-91 337.8 276 61.6
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 2.7e-90 336.3 256 60.5
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 7.9e-90 334.7 248 63.7
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 3.9e-89 332.4 277 59.9
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 6.6e-89 331.6 213 73.2
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 1.1e-88 330.9 239 64.4
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.5e-88 330.5 331 52.9
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.5e-88 329.7 277 58.5
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.3e-88 328.9 282 58.9
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.6e-87 327.0 253 63.2
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 2.4e-86 323.2 271 58.7
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 5.3e-86 322.0 296 56.4
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.5e-85 320.5 279 57.7
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 2.4e-83 313.2 279 57.3
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 3.2e-83 312.8 216 66.7
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.1e-82 310.1 225 63.1
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 2.3e-81 306.6 211 69.2
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 1.9e-80 303.5 350 47.4
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.9e-80 303.5 229 59.8
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 2.8e-79 299.7 258 57.8
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.6e-74 282.3 237 59.5
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 1.8e-73 280.4 230 56.1
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.6e-71 273.9 279 53.8
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.1e-71 273.5 260 53.1
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 6.3e-71 271.9 257 52.5
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 2.9e-68 263.1 191 66.0
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.6e-66 257.3 247 50.2
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.6e-66 255.8 209 60.3
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 2.0e-61 240.4 242 48.3
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 2.0e-61 240.4 242 48.3
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 1.7e-60 237.3 193 60.1
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.0e-60 235.7 209 56.5
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.9e-59 233.8 143 72.0
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 4.2e-59 232.6 177 64.4
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 2.6e-56 223.4 213 55.9
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 6.3e-55 218.8 151 66.2
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 9.1e-54 214.9 287 39.7
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 1.4e-51 207.6 158 63.9
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 9.4e-51 204.9 212 52.4
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.1e-50 203.8 192 54.2
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 8.8e-49 198.4 161 60.9
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 1.1e-48 198.0 251 39.0
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 4.2e-43 179.5 116 70.7
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 4.0e-41 172.9 141 58.9
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 3.1e-38 163.3 312 35.9
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.6e-37 161.0 202 45.5
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.7e-34 150.2 121 62.8
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 8.8e-33 145.2 108 59.3
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 3.7e-31 139.8 137 53.3
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.2e-24 118.2 94 59.6
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 3.1e-22 110.2 273 29.7
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 4.5e-21 106.3 77 64.9
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 2.3e-20 104.0 73 58.9
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.1e-19 101.7 76 59.2
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.6e-18 97.8 86 50.0
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 3.6e-18 96.7 106 44.3
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 1.4e-17 94.7 89 55.1
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 4.9e-15 86.3 71 62.0
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.0e-09 68.6 51 62.7
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 1.5e-08 64.7 183 29.5
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 3.7e-07 60.1 36 69.4
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 8.3e-07 58.9 38 68.4


User provided reference genes

Program Settings