Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 0.0e+00 1246.9 624 100.0
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 1.1e-246 856.7 623 71.6
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 5.4e-241 837.8 662 65.3
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 2.1e-237 825.9 669 64.0
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 1.8e-236 822.8 642 64.2
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 3.1e-236 822.0 655 63.5
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 6.9e-236 820.8 653 63.1
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 3.4e-235 818.5 687 61.4
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 1.3e-234 816.6 636 65.4
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 1.4e-233 813.1 642 65.4
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 6.0e-232 807.7 650 62.2
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 1.3e-231 806.6 526 78.7
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.8e-231 806.2 663 62.7
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 8.7e-231 803.9 646 63.2
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 2.5e-230 802.4 653 63.6
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 4.3e-230 801.6 643 63.5
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 5.6e-230 801.2 650 62.6
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 3.7e-229 798.5 660 62.7
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 3.1e-228 795.4 658 62.6
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 5.3e-228 794.7 664 61.9
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 7.6e-227 790.8 653 61.7
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.3e-226 790.0 648 62.7
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 3.8e-226 788.5 623 63.4
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 3.8e-226 788.5 650 61.7
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.5e-225 785.8 648 62.2
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 2.5e-225 785.8 648 62.3
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 4.2e-225 785.0 622 65.0
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 2.7e-224 782.3 649 61.3
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 9.6e-222 773.9 706 57.9
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 1.3e-218 763.5 666 59.5
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 1.7e-218 763.1 656 60.1
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 5.7e-214 748.0 652 58.7
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 1.6e-213 746.5 739 55.8
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 2.4e-212 742.7 615 62.6
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 9.0e-212 740.7 624 60.1
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 4.5e-211 738.4 666 58.0
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 2.2e-210 736.1 600 63.0
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 7.9e-208 727.6 679 55.2
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 4.1e-204 715.3 647 58.1
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 4.2e-201 705.3 642 57.9
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 7.0e-196 688.0 657 56.8
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 8.5e-194 681.0 674 54.5
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 4.2e-193 678.7 536 63.6
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 2.0e-190 669.8 619 57.4
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 9.7e-190 667.5 677 53.6
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 1.3e-189 667.2 540 62.0
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 7.0e-188 661.4 657 54.9
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 4.2e-185 652.1 768 49.7
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 7.0e-180 634.8 633 56.1
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 9.1e-180 634.4 547 61.1
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 2.5e-177 626.3 645 49.6
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.2e-177 625.9 521 62.4
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.0e-174 616.7 522 61.9
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 7.5e-174 614.8 648 50.9
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 9.8e-174 614.4 459 69.3
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.1e-168 595.1 660 51.2
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.2e-165 586.6 687 49.1
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.8e-165 586.3 687 48.9
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 2.9e-162 576.2 491 61.5
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 8.6e-162 574.7 487 62.2
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 1.5e-158 563.9 335 78.8
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 1.5e-158 563.9 462 64.5
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 4.6e-155 552.4 696 47.4
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 2.3e-154 550.1 448 63.4
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 6.6e-154 548.5 630 49.5
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.2e-152 542.0 713 45.0
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 4.0e-151 539.3 505 58.0
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 8.3e-149 531.6 541 55.6
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 1.4e-148 530.8 491 57.6
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 2.4e-148 530.0 337 74.2
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 3.0e-146 523.1 482 58.7
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 2.6e-142 510.0 355 71.3
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 1.3e-141 507.7 354 70.6
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 3.9e-138 496.1 449 57.0
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 2.7e-131 473.4 535 49.5
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 4.8e-128 462.6 641 40.9
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 7.6e-126 455.3 460 55.0
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 1.3e-125 454.5 400 58.2
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.2e-124 449.9 460 54.8
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 1.7e-122 444.1 434 55.5
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 4.0e-119 433.0 623 39.6
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 1.1e-113 414.8 244 79.5
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 4.5e-94 349.7 258 69.0
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 6.5e-69 266.2 229 61.1
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 1.1e-68 265.4 168 73.8
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 7.2e-68 262.7 263 56.7
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 3.0e-66 257.3 152 78.9
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 8.8e-66 255.8 277 47.7
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 1.3e-64 251.9 171 69.0
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 1.8e-63 248.1 312 45.5
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 1.0e-61 242.3 170 64.7
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 1.3e-61 241.9 169 66.9
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 1.3e-61 241.9 171 64.9
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 1.7e-61 241.5 171 64.9
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 1.5e-60 238.4 170 62.9
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 4.2e-60 236.9 170 61.8
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.1e-59 234.6 175 61.7
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.0e-58 232.3 578 31.3
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 3.0e-58 230.7 170 64.1
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 8.3e-56 222.6 172 59.3
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 1.3e-53 215.3 131 78.6
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 8.6e-53 212.6 173 59.0
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 2.1e-51 208.0 170 52.9
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 1.5e-49 201.8 115 78.3
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 2.0e-46 191.4 104 83.7
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 8.6e-45 186.0 98 85.7
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 9.5e-44 182.6 145 60.0
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 9.5e-44 182.6 171 52.0
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 6.2e-43 179.9 129 63.6
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 3.1e-42 177.6 130 64.6
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 1.5e-41 175.3 132 65.2
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 3.4e-41 174.1 132 65.2
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 4.6e-38 163.7 88 85.2
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 6.0e-38 163.3 868 23.2
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 3.4e-33 147.5 99 69.7
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 1.7e-29 135.2 114 63.2
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 3.0e-29 134.4 198 34.3
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 7.3e-28 129.8 136 44.1
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 4.7e-27 127.1 96 53.1
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.3e-21 109.0 73 67.1
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.5e-20 105.5 75 65.3
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.4e-18 99.0 65 69.2
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 2.4e-18 98.2 196 39.3
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 5.2e-18 97.1 70 58.6
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 5.2e-18 97.1 77 59.7
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 3.9e-13 80.9 56 64.3
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 3.9e-13 80.9 58 51.7
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 2.1e-11 75.1 43 79.1
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 3.1e-10 71.2 87 46.0
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 1.2e-09 69.3 87 44.8
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 1.5e-09 68.9 87 44.8
TWI39G1032 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 7.6e-09 66.6 216 26.9
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 9.9e-09 66.2 41 73.2
FAN08G0156 Fragaria x ananassa HOM05D002332 ORTHO05D002509 1.7e-08 65.5 251 25.1
FvH4_5g07940 Fragaria vesca HOM05D002332 ORTHO05D002509 6.4e-08 63.5 255 26.3
FAN18G1292 Fragaria x ananassa HOM05D002332 ORTHO05D002509 6.4e-08 63.5 255 26.3
Hma1.2p1_0672F.1_g200870 Hydrangea macrophylla HOM05D005151 ORTHO05D006322 8.4e-08 63.2 220 23.6
Thecc.03G126600 Theobroma cacao HOM05D002332 ORTHO05D002509 1.1e-07 62.8 248 23.8
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 2.4e-07 61.6 56 55.4
RcHm_v2.0_Chr7g0190461 Rosa chinensis HOM05D002332 ORTHO05D002509 2.4e-07 61.6 250 24.8
GSVIVG01008513001 Vitis vinifera HOM05D002332 ORTHO05D002509 2.4e-07 61.6 251 24.3
MD06G1143900 Malus domestica HOM05D002332 ORTHO05D002509 3.2e-07 61.2 186 28.0
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 7.1e-07 60.1 316 21.5
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 9.3e-07 59.7 51 39.2
Cfa018843 Carpinus fangiana HOM05D002332 ORTHO05D002509 1.2e-06 59.3 151 31.1
Haze_07236 Corylus avellana HOM05D002332 ORTHO05D002509 1.2e-06 59.3 251 25.9
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 2.1e-06 58.5 232 24.1
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 2.1e-06 58.5 225 24.4
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 2.1e-06 58.5 159 23.9
Ca_12501_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 2.7e-06 58.2 171 25.7
Ca_25727_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 2.7e-06 58.2 171 25.7
QL10p004201 Quercus lobata HOM05D002332 ORTHO05D002509 3.5e-06 57.8 251 25.5
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 4.6e-06 57.4 231 23.4
Glyma.18G275100 Glycine max HOM05D002332 ORTHO05D002509 7.9e-06 56.6 171 23.4
RcHm_v2.0_Chr4g0404071 Rosa chinensis HOM05D005766 ORTHO05D007002 7.9e-06 56.6 34 76.5


User provided reference genes

Program Settings