Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 1.4e-213 746.1 404 100.0
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 4.0e-176 621.7 405 81.5
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.8e-173 612.8 450 72.7
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.6e-169 599.7 404 77.2
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.8e-169 599.0 406 77.8
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 4.7e-169 598.2 406 77.3
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 4.0e-168 595.1 406 76.8
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.0e-167 592.8 404 74.8
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.6e-167 592.4 404 75.0
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.7e-166 589.7 405 74.6
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 2.2e-166 589.3 406 75.6
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 3.7e-166 588.6 404 76.2
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 1.4e-165 586.6 405 73.6
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.2e-164 583.6 402 75.4
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 2.7e-164 582.4 406 73.9
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 3.5e-164 582.0 404 73.0
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 2.3e-163 579.3 404 72.8
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.9e-163 578.9 404 72.0
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 7.3e-162 574.3 404 74.0
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 9.5e-162 573.9 399 73.7
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 2.1e-161 572.8 409 72.6
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.8e-161 572.4 399 73.9
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 2.8e-161 572.4 403 74.9
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.6e-161 572.0 409 72.4
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 6.1e-161 571.2 404 72.3
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 6.1e-161 571.2 409 72.1
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.0e-160 570.5 409 72.4
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 1.0e-160 570.5 407 72.0
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 1.4e-160 570.1 399 74.2
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.8e-160 569.7 404 71.8
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.3e-160 569.3 404 71.3
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.0e-160 568.5 409 71.6
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 4.0e-160 568.5 404 73.0
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 6.8e-160 567.8 419 69.9
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 6.8e-160 567.8 404 71.0
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 6.8e-160 567.8 404 71.0
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 6.8e-160 567.8 453 69.3
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 8.9e-160 567.4 406 74.4
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 8.9e-160 567.4 407 72.0
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 8.9e-160 567.4 407 72.0
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 1.5e-159 566.6 405 70.6
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 1.5e-159 566.6 405 70.6
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 2.0e-159 566.2 399 73.4
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.0e-159 566.2 404 75.0
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.4e-159 565.5 409 72.1
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 4.4e-159 565.1 404 71.0
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 5.7e-159 564.7 405 73.1
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 7.5e-159 564.3 404 74.8
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.7e-158 563.1 404 71.3
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 3.7e-158 562.0 407 72.5
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 4.9e-158 561.6 402 72.9
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.1e-157 560.5 443 70.4
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.2e-157 558.9 404 72.0
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 2.0e-156 556.2 404 69.6
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 2.7e-156 555.8 404 69.8
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 2.7e-156 555.8 398 72.9
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 7.8e-156 554.3 404 70.3
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.3e-155 553.5 404 70.5
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 1.3e-155 553.5 404 71.0
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.3e-155 553.5 405 72.1
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.3e-155 553.5 388 71.9
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.7e-155 553.1 410 72.4
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 2.3e-155 552.7 400 73.8
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 3.0e-155 552.4 406 72.7
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 3.9e-155 552.0 402 70.6
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 6.6e-155 551.2 404 71.3
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 8.6e-155 550.8 408 70.1
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.5e-154 550.1 402 70.9
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.9e-154 549.7 400 71.2
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 3.3e-154 548.9 399 69.9
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.2e-153 547.0 404 69.1
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 1.2e-153 547.0 404 69.3
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 1.1e-152 543.9 400 71.5
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.1e-152 542.3 405 70.9
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 6.8e-152 541.2 400 70.2
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.5e-151 540.0 406 71.4
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 2.0e-151 539.7 405 70.1
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 2.0e-151 539.7 405 71.6
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.3e-150 537.0 404 68.3
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 4.9e-150 535.0 403 71.0
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 6.4e-150 534.6 403 71.5
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.2e-149 530.8 409 71.1
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.2e-148 530.4 403 71.5
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 2.7e-148 529.3 401 70.6
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 3.5e-148 528.9 403 71.2
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 4.6e-148 528.5 401 68.3
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 4.6e-148 528.5 402 68.9
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 3.9e-147 525.4 401 69.8
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 6.6e-147 524.6 405 68.1
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 6.6e-147 524.6 411 67.6
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 1.1e-146 523.9 403 68.7
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 2.5e-146 522.7 403 68.7
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 2.5e-146 522.7 440 61.8
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 3.3e-146 522.3 401 69.3
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 3.3e-146 522.3 401 67.8
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 7.3e-146 521.2 401 66.6
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.2e-145 520.4 406 65.3
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.7e-145 518.5 404 66.1
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 4.7e-145 518.5 404 66.1
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.4e-144 516.9 399 65.9
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.8e-144 516.5 402 68.7
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.3e-144 516.2 402 69.4
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 4.0e-144 515.4 397 65.5
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.2e-143 513.8 402 67.7
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.6e-143 512.7 406 67.7
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 3.2e-141 505.8 397 63.7
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 4.1e-141 505.4 403 67.5
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 5.4e-141 505.0 430 61.4
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 9.2e-141 504.2 401 68.1
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 3.9e-139 498.8 406 63.3
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 5.1e-139 498.4 407 67.6
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 2.8e-137 492.7 416 66.3
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 8.1e-137 491.1 404 63.1
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.4e-136 490.3 404 61.9
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.4e-135 485.3 405 63.2
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.2e-132 477.2 399 61.2
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 6.6e-131 471.5 403 65.5
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.5e-127 460.3 333 73.3
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 6.4e-126 454.9 359 64.6
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.5e-122 443.0 516 53.5
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.2e-117 426.0 376 60.4
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 1.2e-116 424.1 336 65.2
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.2e-116 424.1 442 58.1
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.0e-115 419.5 294 73.1
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.5e-114 416.4 435 56.6
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 1.2e-111 407.5 399 53.4
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 5.1e-107 392.1 404 58.2
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.1e-106 391.0 405 54.1
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.1e-106 391.0 405 54.1
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 1.1e-90 337.8 398 46.5
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 7.7e-87 325.1 400 51.5
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 6.5e-86 322.0 406 44.8
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 6.3e-81 305.4 404 51.5
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 1.8e-72 277.3 203 71.4
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.3e-66 256.5 358 44.1
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 5.7e-66 255.8 428 40.2
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 3.6e-60 236.5 278 54.7
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.8e-59 234.2 306 45.1
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.4e-50 203.0 151 70.9
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.0e-38 163.7 147 62.6
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 2.3e-35 154.1 119 72.3
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 1.5e-26 124.8 439 30.1
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 7.1e-24 115.9 105 53.3
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 2.1e-20 104.4 128 46.9
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.4e-19 100.9 73 67.1
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 8.9e-19 99.0 93 54.8
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.0e-18 97.8 82 69.5
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.9e-17 94.0 79 65.8
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.4e-16 91.7 435 25.3
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 5.4e-16 89.7 69 66.7
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 2.7e-15 87.4 84 54.8
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 3.3e-13 80.5 391 24.3
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 4.3e-13 80.1 68 57.4
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 1.8e-11 74.7 430 24.9
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 3.1e-11 73.9 249 29.3
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.2e-09 67.8 55 63.6
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 6.6e-06 56.2 28 82.1


User provided reference genes

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