Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 5.0e-238 827.4 425 100.0
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 4.0e-179 631.7 436 79.6
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 4.5e-170 601.7 443 75.6
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 2.3e-166 589.3 440 72.0
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.5e-165 586.6 434 70.7
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 4.3e-165 585.1 439 69.7
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 5.6e-165 584.7 440 69.5
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 3.8e-161 572.0 439 69.5
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 4.6e-159 565.1 441 71.0
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 1.8e-158 563.1 428 71.3
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 1.4e-155 553.5 449 70.6
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.5e-154 548.5 434 69.8
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 3.8e-153 545.4 440 69.3
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 5.0e-153 545.0 435 69.4
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.9e-149 533.1 408 68.4
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.8e-148 529.3 433 67.0
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.8e-147 526.6 432 66.7
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 4.5e-146 521.9 394 67.8
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.9e-144 516.5 369 72.4
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 1.9e-144 516.5 400 67.0
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 2.5e-144 516.2 430 66.5
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 4.2e-144 515.4 390 68.7
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 5.5e-144 515.0 395 67.1
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 2.1e-143 513.1 399 67.2
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 2.7e-143 512.7 398 66.3
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 4.7e-143 511.9 394 67.0
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 4.7e-143 511.9 447 64.4
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 5.1e-142 508.4 439 65.1
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 3.3e-141 505.8 398 67.1
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 1.7e-140 503.4 393 66.7
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.8e-139 500.0 394 66.2
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.2e-138 497.3 392 65.3
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 5.9e-138 495.0 393 65.4
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 7.7e-138 494.6 389 66.6
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 1.7e-137 493.4 396 65.9
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.9e-137 492.7 426 64.1
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 2.9e-137 492.7 438 62.8
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.8e-137 492.3 392 66.1
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 5.0e-137 491.9 401 63.8
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 6.5e-137 491.5 426 66.2
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 6.5e-137 491.5 393 65.9
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 1.1e-136 490.7 393 65.9
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.1e-136 490.7 393 65.9
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.4e-136 490.3 401 64.8
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.9e-136 490.0 392 65.6
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 4.2e-136 488.8 426 64.8
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 5.5e-136 488.4 426 64.1
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 9.4e-136 487.6 427 64.6
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 9.4e-136 487.6 396 67.4
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 2.7e-135 486.1 392 65.6
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 4.7e-135 485.3 396 64.6
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 6.1e-135 485.0 397 65.0
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 6.1e-135 485.0 397 65.0
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.0e-134 484.2 444 63.1
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.0e-134 484.2 436 64.2
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.4e-134 483.8 432 63.0
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.0e-134 482.6 392 65.1
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.0e-134 482.6 399 64.2
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.0e-134 482.6 394 64.5
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 6.7e-134 481.5 384 65.6
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 1.1e-133 480.7 393 64.4
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.6e-133 479.6 396 62.9
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 3.3e-133 479.2 432 62.5
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 4.4e-133 478.8 406 62.6
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 5.7e-133 478.4 426 64.1
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 5.7e-133 478.4 436 59.6
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.3e-132 477.2 407 67.8
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 1.7e-132 476.9 431 63.8
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.2e-132 476.5 404 63.9
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 4.8e-132 475.3 394 63.5
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 6.3e-132 474.9 392 63.0
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 6.3e-132 474.9 382 65.2
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 8.2e-132 474.6 398 62.6
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.4e-131 473.8 429 61.5
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 2.4e-131 473.0 386 63.5
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 3.1e-131 472.6 388 64.7
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 4.1e-131 472.2 385 64.4
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 5.3e-131 471.9 385 64.4
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 5.3e-131 471.9 385 64.4
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 3.5e-130 469.2 394 60.4
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 5.9e-130 468.4 410 63.4
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 1.7e-129 466.8 403 62.0
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.2e-129 466.5 386 62.4
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 2.9e-129 466.1 397 62.2
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 5.0e-129 465.3 403 60.8
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 5.0e-129 465.3 407 61.7
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 8.5e-129 464.5 398 62.8
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 1.1e-128 464.2 402 63.2
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.9e-128 463.4 399 62.2
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 2.5e-128 463.0 385 62.3
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 2.7e-127 459.5 439 62.0
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 6.1e-127 458.4 401 61.6
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 2.3e-126 456.4 427 60.7
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 3.0e-126 456.1 388 62.1
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 2.0e-125 453.4 422 58.5
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.3e-125 452.6 431 61.9
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.8e-124 449.5 398 60.3
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 8.2e-124 448.0 427 59.7
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.4e-123 446.4 427 60.7
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 2.4e-123 446.4 409 59.4
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 2.7e-122 443.0 398 58.8
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 2.7e-122 443.0 429 61.1
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 3.5e-122 442.6 429 61.1
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 4.5e-122 442.2 396 61.9
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.0e-121 441.0 404 59.9
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.2e-121 439.9 404 59.9
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 3.8e-121 439.1 424 56.6
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.2e-119 434.1 388 60.3
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.6e-119 433.7 389 57.3
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.6e-119 433.7 389 57.3
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.6e-119 432.6 388 57.5
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.8e-118 430.3 426 58.5
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.8e-118 430.3 426 58.5
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 7.7e-114 414.8 382 58.4
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.0e-113 414.5 383 58.5
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 6.3e-108 395.2 330 61.8
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 7.8e-106 388.3 426 52.1
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 8.0e-103 378.3 314 64.0
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 8.0e-103 378.3 397 53.7
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 4.1e-99 365.9 390 51.8
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.5e-96 357.5 396 50.0
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.7e-92 344.0 337 56.4
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 4.7e-79 299.3 225 68.0
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 3.8e-76 289.7 427 43.6
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 5.8e-69 265.8 258 55.0
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 2.9e-68 263.5 249 58.2
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.6e-66 257.7 397 40.1
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.7e-66 256.9 321 47.4
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.8e-63 246.9 154 76.0
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 3.2e-59 233.4 232 54.7
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 7.1e-59 232.3 190 72.1
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 6.0e-58 229.2 151 75.5
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 2.6e-53 213.8 148 71.6
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 5.5e-51 206.1 147 68.0
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.7e-44 184.5 215 51.6
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 4.2e-43 179.9 444 32.0
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.3e-41 174.9 320 34.1
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 4.1e-30 136.7 114 65.8
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 8.0e-18 95.9 79 58.2
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.9e-17 93.6 79 59.5
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 4.8e-07 60.1 36 61.1
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 6.3e-07 59.7 137 35.0
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 1.4e-06 58.5 164 28.7
Actinidia19558 Actinidia chinensis HOM05D005312 ORTHO05D006459 9.1e-06 55.8 92 45.7


User provided reference genes

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