Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 2355.1 1198 100.0
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 2070.4 1202 87.2
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 2032.3 1200 86.2
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1943.3 1203 82.5
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1902.5 1205 79.9
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1865.5 1208 78.7
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1851.6 1201 78.5
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1838.9 1206 77.2
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1837.8 1206 77.0
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1830.5 1206 76.8
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1830.1 1202 76.3
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1823.5 1217 76.0
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1822.0 1198 76.5
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1815.4 1204 75.9
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1811.2 1202 76.0
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1810.0 1204 75.7
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1807.7 1198 76.1
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1805.8 1207 76.4
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1801.6 1290 72.8
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1801.6 1290 72.8
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1793.9 1198 75.7
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1791.9 1204 75.2
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1788.1 1291 72.3
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1773.8 1209 74.4
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1772.7 1207 73.6
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1771.5 1205 74.4
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1766.5 1205 73.9
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1765.7 1203 74.1
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1765.7 1297 70.1
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1762.7 1214 73.4
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1760.0 1221 73.4
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1758.4 1206 73.3
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1758.0 1206 73.5
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1756.9 1205 73.6
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1756.5 1231 73.4
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1755.7 1205 73.8
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1755.3 1221 72.9
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1755.3 1206 73.8
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1754.6 1201 73.6
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1754.2 1204 73.9
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1753.0 1203 73.9
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1751.9 1203 73.8
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1751.9 1204 73.9
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1749.2 1206 72.9
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1748.0 1203 73.7
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1748.0 1207 73.8
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1746.9 1205 73.4
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1746.5 1203 73.6
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1746.5 1221 72.7
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1745.7 1205 73.8
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1744.2 1205 73.1
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1743.0 1201 73.2
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1741.9 1205 73.2
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1739.2 1204 72.7
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1736.9 1205 72.7
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1735.7 1208 73.3
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1735.3 1205 73.3
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1735.3 1206 73.1
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1733.8 1198 73.4
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1730.7 1211 72.3
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1729.5 1205 72.2
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1728.0 1205 73.0
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1726.5 1348 68.8
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1724.5 1200 73.3
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1721.8 1200 73.2
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1715.3 1204 71.7
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1710.3 1206 71.8
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1709.1 1202 72.0
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1706.8 1207 71.4
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1705.6 1201 71.9
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1701.8 1203 71.6
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1700.6 1132 76.2
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1685.2 1202 71.3
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1684.1 1202 71.5
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1681.0 1202 71.2
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1674.1 1204 71.5
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1662.1 1196 71.2
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1655.2 1206 70.8
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1646.3 1212 68.7
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1645.2 1099 76.6
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1643.2 1203 69.7
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1639.8 1208 70.1
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1628.2 1207 70.4
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1620.9 1202 69.7
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1592.4 1212 67.2
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1565.8 1200 68.1
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1533.9 1203 65.0
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1530.4 1203 64.7
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1506.9 1014 75.7
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1504.6 1208 63.9
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1498.0 1041 73.2
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1482.2 1045 71.9
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1477.6 1045 71.8
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1448.0 1027 72.2
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1412.1 984 73.3
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1404.4 997 72.3
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1401.3 983 72.8
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1375.5 1060 67.0
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1367.1 899 77.4
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1356.3 863 78.6
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1281.5 827 77.3
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1278.1 1217 55.9
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1269.2 940 70.1
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1194.5 1246 52.2
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1123.6 905 64.6
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 5.2e-309 1064.7 1221 49.5
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 6.0e-305 1051.2 1219 48.9
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 9.4e-266 921.0 1199 43.5
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 8.8e-264 914.4 1325 41.7
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 1.2e-247 860.9 518 84.0
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.0e-236 823.5 1242 41.0
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 7.8e-220 768.5 1144 41.3
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 9.9e-183 645.2 424 76.2
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 3.1e-144 517.3 306 80.7
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 1.2e-143 515.4 324 77.2
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 7.7e-143 512.7 752 42.3
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.9e-142 510.8 482 59.1
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 1.6e-140 505.0 435 60.0
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.3e-126 458.8 323 69.3
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 8.3e-121 439.5 350 64.6
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 2.9e-118 431.0 292 74.7
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 8.3e-113 412.9 329 67.2
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 3.5e-111 407.5 316 68.7
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 6.4e-97 360.1 361 52.9
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.2e-87 329.3 256 67.6
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 4.0e-83 314.3 290 53.4
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 1.9e-77 295.4 394 45.2
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 6.7e-62 243.8 273 52.7
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 4.5e-58 231.1 166 68.7
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 1.0e-49 203.4 139 74.1
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 6.7e-46 190.7 116 75.0
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 1.5e-45 189.5 117 76.9
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 2.8e-44 185.3 147 66.7
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 8.2e-44 183.7 166 53.0
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.7e-41 176.0 138 59.4
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 2.7e-39 168.7 727 24.1
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.3e-38 165.6 187 52.4
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.8e-36 158.7 305 36.4
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.0e-30 140.2 82 84.1
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 3.9e-30 138.3 164 48.8
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 4.1e-27 128.3 166 42.2
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.4e-19 103.2 71 66.2
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 2.9e-17 95.5 62 71.0
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 4.7e-15 88.2 58 69.0
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 2.2e-12 79.3 74 66.2
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 2.2e-12 79.3 74 66.2
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.2e-12 79.3 244 30.7
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 2.8e-12 79.0 45 75.6
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 1.1e-11 77.0 60 71.7
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 2.0e-10 72.8 55 63.6
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 3.5e-10 72.0 70 54.3
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.9e-09 68.9 79 48.1
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 2.1e-07 62.8 45 71.1
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 3.6e-07 62.0 38 68.4
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.4e-06 60.1 281 24.9
BcaC03g13346 Brassica carinata HOM05D004589 ORTHO05D023960 4.0e-06 58.5 48 70.8


User provided reference genes

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