Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 9.6e-104 380.2 193 100.0
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 2.5e-51 206.1 207 58.9
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 1.0e-49 200.7 193 58.0
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.3e-47 193.7 200 58.5
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.3e-47 193.7 200 58.5
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 6.3e-47 191.4 207 58.0
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 3.0e-41 172.6 203 51.7
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 9.8e-40 167.5 205 54.1
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.4e-33 147.1 192 45.8
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 1.4e-33 147.1 231 42.9
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 3.0e-33 146.0 192 45.3
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 3.4e-32 142.5 195 45.6
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 3.4e-32 142.5 194 45.9
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 5.7e-32 141.7 188 46.3
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 7.5e-32 141.4 189 47.6
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 4.9e-31 138.7 194 44.8
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 6.3e-31 138.3 199 45.2
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 8.3e-31 137.9 191 46.1
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 1.8e-30 136.7 201 47.3
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 3.5e-29 132.5 203 43.8
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 3.5e-29 132.5 198 46.5
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 7.8e-29 131.3 187 44.9
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 1.3e-28 130.6 195 45.1
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 1.3e-28 130.6 258 37.6
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 2.3e-28 129.8 194 43.8
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 5.0e-28 128.6 197 46.2
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 8.6e-28 127.9 206 45.6
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.1e-27 127.5 197 44.7
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 1.9e-27 126.7 197 45.2
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 4.3e-27 125.6 207 42.5
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 5.6e-27 125.2 199 46.2
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 7.3e-27 124.8 197 45.2
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 7.3e-27 124.8 197 45.2
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 7.3e-27 124.8 197 44.7
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 9.5e-27 124.4 214 42.5
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.1e-26 123.2 195 44.6
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 2.1e-26 123.2 199 44.7
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 2.8e-26 122.9 199 43.7
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.6e-26 122.5 195 43.6
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.6e-26 122.5 195 44.6
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 8.0e-26 121.3 180 42.8
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.0e-26 121.3 188 44.1
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 8.0e-26 121.3 197 43.7
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 1.8e-25 120.2 165 47.9
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-25 119.8 204 43.1
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.1e-25 119.4 195 44.1
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.0e-25 119.0 195 44.1
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 4.0e-25 119.0 194 41.8
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 5.2e-25 118.6 199 44.2
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 5.2e-25 118.6 185 44.9
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.8e-25 118.2 193 44.6
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.9e-25 117.9 195 43.6
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.9e-25 117.9 201 43.8
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 8.9e-25 117.9 197 44.7
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 1.5e-24 117.1 198 44.4
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 2.6e-24 116.3 185 45.4
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 3.4e-24 115.9 189 42.3
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 3.4e-24 115.9 190 40.0
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 5.8e-24 115.2 196 39.3
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 5.8e-24 115.2 195 42.1
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.5e-24 114.8 195 43.1
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 9.8e-24 114.4 192 41.7
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 1.7e-23 113.6 192 43.2
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 2.2e-23 113.2 230 36.1
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 2.2e-23 113.2 197 41.1
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 2.2e-23 113.2 168 44.0
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-23 112.5 204 40.7
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 3.7e-23 112.5 177 41.8
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 4.9e-23 112.1 193 43.0
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 6.4e-23 111.7 219 36.5
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 8.3e-23 111.3 197 41.1
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.1e-22 110.9 204 36.8
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.4e-22 110.5 167 42.5
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.4e-22 110.5 191 43.5
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 1.9e-22 110.2 150 43.3
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.9e-22 110.2 194 42.3
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 2.4e-22 109.8 190 37.9
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 2.4e-22 109.8 197 40.6
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 4.1e-22 109.0 183 40.4
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 7.0e-22 108.2 196 39.8
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 9.2e-22 107.8 215 35.3
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 3.5e-21 105.9 196 37.2
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.7e-20 103.6 191 41.9
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 3.9e-20 102.4 195 39.5
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 5.0e-20 102.1 190 40.5
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 8.6e-20 101.3 199 36.7
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 2.8e-18 96.3 117 50.4
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.8e-18 96.3 191 36.1
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 3.6e-18 95.9 191 39.3
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 8.1e-18 94.7 181 39.2
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 8.1e-18 94.7 178 39.3
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 1.1e-17 94.4 188 39.4
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 1.1e-17 94.4 135 45.2
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 1.8e-17 93.6 175 36.6
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 1.8e-17 93.6 187 38.0
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 3.1e-17 92.8 149 39.6
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 6.8e-17 91.7 87 60.9
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 6.8e-17 91.7 194 36.1
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.2e-16 90.9 172 36.0
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.5e-16 90.5 193 35.8
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.0e-16 90.1 151 40.4
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 2.6e-16 89.7 192 37.5
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 3.4e-16 89.4 186 35.5
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-15 87.4 191 36.1
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 2.2e-15 86.7 191 36.1
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.9e-15 86.3 173 34.7
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 4.9e-15 85.5 183 37.7
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 6.4e-15 85.1 187 39.0
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 6.4e-15 85.1 191 35.1
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 6.4e-15 85.1 191 35.1
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.4e-15 85.1 138 40.6
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.4e-15 85.1 138 40.6
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.9e-14 83.6 155 37.4
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 4.1e-14 82.4 153 38.6
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 2.1e-13 80.1 188 35.6
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 3.5e-13 79.3 92 53.3
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 3.5e-13 79.3 140 37.1
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 4.6e-13 79.0 187 34.2
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 6.0e-13 78.6 174 33.3
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 7.8e-13 78.2 196 35.7
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.0e-12 77.8 160 34.4
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 1.3e-12 77.4 91 54.9
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.7e-12 77.0 188 35.1
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 1.7e-12 77.0 91 52.7
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 3.0e-12 76.3 163 35.0
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 3.9e-12 75.9 75 53.3
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 6.6e-12 75.1 96 44.8
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 6.6e-12 75.1 96 44.8
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 1.1e-11 74.3 89 49.4
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 3.3e-11 72.8 184 33.7
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 4.3e-11 72.4 75 52.0
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 9.5e-11 71.2 193 33.7
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.6e-10 70.5 185 33.5
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 1.6e-10 70.5 212 29.7
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.6e-10 70.5 153 35.9
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 2.8e-10 69.7 72 51.4
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 2.8e-10 69.7 96 43.8
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 2.8e-10 69.7 188 32.4
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 2.8e-10 69.7 107 40.2
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 4.7e-10 68.9 88 44.3
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 4.7e-10 68.9 72 50.0
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 4.7e-10 68.9 146 33.6
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 8.1e-10 68.2 93 43.0
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 8.1e-10 68.2 174 32.2
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 1.8e-09 67.0 185 33.5
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 5.2e-09 65.5 96 41.7
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 5.2e-09 65.5 70 51.4
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 5.2e-09 65.5 96 41.7
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 5.2e-09 65.5 93 41.9
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 6.8e-09 65.1 65 49.2
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 8.9e-09 64.7 155 35.5
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 8.9e-09 64.7 164 32.9
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 8.9e-09 64.7 164 32.9
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 8.9e-09 64.7 64 53.1
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.9e-09 64.7 45 64.4
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.9e-09 64.7 45 64.4
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 3.4e-08 62.8 85 48.2
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 3.4e-08 62.8 85 48.2
Sed0023203 Sechium edule HOM05D004036 ORTHO05D004576 7.6e-08 61.6 78 44.9
unitig_85.g27159 Utricularia gibba HOM05D050274 ORTHO05D004576 9.9e-08 61.2 204 32.8
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 2.2e-07 60.1 80 41.2
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 2.2e-07 60.1 80 41.2
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 2.2e-07 60.1 80 41.2
unitig_578.g16599 Utricularia gibba HOM05D050274 ORTHO05D004576 2.2e-07 60.1 122 36.9
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 2.9e-07 59.7 155 29.7
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 2.9e-07 59.7 165 33.9
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 6.4e-07 58.5 155 29.7
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 1.9e-06 57.0 72 38.9
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 4.1e-06 55.8 138 32.6
C04p56020 Brassica napus HOM05D000001 ORTHO05D004044 4.1e-06 55.8 157 28.0
BolC4t27135H Brassica oleracea HOM05D000001 ORTHO05D004044 4.1e-06 55.8 157 28.0


User provided reference genes

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